IslandPathversion 1.0

IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.10 STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2639	 64.01	0	2852529..2853620	+	363	114798060	-	HNE_2693	-	iron ABC transporter periplasmic-binding protein
2640	 69.35	+1	2853656..2855221	+	521	114798364	-	HNE_2694	-	ABC transporter, permease protein
2641	 68.75	+1	2855218..2856225	+	335	114797566	-	HNE_2695	-	iron ABC transporter, ATP-binding protein
2642	 63.26	0	2856317..2857753	+	478	114800353	-	HNE_2696	-	M48 family peptidase
2643	 60.86	0	2857851..2858591	+	246	114799585	-	HNE_2697	-	outer membrane protein
2644	 58.57	0	2858592..2859554	-	320	114797818	-	HNE_2698	-	NAD-dependent epimerase/dehydratase family protein
2645	 64.14	0	2859671..2860105	-	144	114797179	-	HNE_2699	-	peptidyl-tRNA hydrolase domain-containing protein
2646	 61.14	0	2860243..2860767	+	174	114799951	-	HNE_2700	-	hypothetical protein
2647	 65.41	0	2860940..2861338	+	132	114799355	-	HNE_2701	-	NUDIX family hydrolase NudH subfamily hydrolase
2648	 51.85	-2	2861558..2861665	-	35	114797211	-	HNE_2702	-	hypothetical protein
2649	 65.16	0	2861665..2862795	+	376	114799187	-	HNE_2703	-	putative lipoprotein
2650	 63.81	0	2862820..2864466	+	548	114799724	-	HNE_2704	-	hypothetical protein
2651	 61.46	0	2864742..2866334	+	530	114797578	pckA	HNE_2705	-	phosphoenolpyruvate carboxykinase
2652	 63.03	0	2866498..2867706	+	402	114798142	-	HNE_2706	-	acetyl-CoA acyltransferase/thiolase family protein
2653	 64.25	0	2867863..2868606	+	247	114799738	-	HNE_2707	-	putative lipoprotein
2654	 70.52	+2	2868611..2869129	+	172	114798971	-	HNE_2708	-	putative lipoprotein
2655	 66.57	+1	2869281..2870369	+	362	114798561	-	HNE_2709	-	hypothetical protein
2656	 63.83	0	2870366..2871316	-	316	114797057	-	HNE_2710	-	rhodanese domain-containing protein
2657	 67.89	+1	2872092..2872583	+	163	114798528	-	HNE_2711	-	hypothetical protein
2658	 47.91	-2	2872665..2874557	-	630	114799136	-	HNE_2712	-	hypothetical protein
2659	 64.98	0	2874605..2875552	-	315	114799593	ispH	HNE_2713	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
2660	 63.69	0	2875581..2876252	+	223	114800357	-	HNE_2714	-	hypothetical protein
2661	 65.08	0	2876256..2878025	+	589	114797992	argS	HNE_2715	-	arginyl-tRNA synthetase
2662	 66.41	+1	2878667..2879836	+	389	114798751	-	HNE_2716	-	hypothetical protein
2663	 64.79	0	2879936..2881000	+	354	114799308	-	HNE_2717	-	endonuclease/exonuclease/phosphatase family protein
2664	 69.63	+2	2881130..2881906	+	258	114797772	-	HNE_2718	-	hypothetical protein
2665	 63.64	0	2882197..2883351	+	384	114799925	gcvT	HNE_2719	-	glycine cleavage system T protein
2666	 58.87	0	2883370..2883741	+	123	114799251	gcvH	HNE_2720	-	glycine cleavage system H protein
2667	 65.25	0	2883746..2885089	+	447	114797821	-	HNE_2721	-	glycine dehydrogenase subunit 1
2668	 63.92	0	2885095..2886660	+	521	114800538	-	HNE_2722	-	glycine dehydrogenase subunit 2
2669	 65.14	0	2886681..2888060	-	459	114798303	-	HNE_2723	-	putative exopolysaccharide production protein ExoZ
2670	 64.97	0	2888173..2888526	+	117	114797279	-	HNE_2724	-	hypothetical protein
2671	 64.10	0	2888622..2890025	+	467	114797432	-	HNE_2725	-	amidohydrolase family protein
2672	 67.45	+1	2890022..2891296	+	424	114799767	-	HNE_2726	-	amidohydrolase family protein
2673	 65.19	0	2891462..2892208	+	248	114799047	-	HNE_2727	-	hypothetical protein
2674	 64.51	0	2892218..2892634	+	138	114798461	-	HNE_2728	-	hypothetical protein
2675	 66.40	+1	2892767..2893891	+	374	114799561	-	HNE_2729	-	putative lipoprotein
2676	 63.68	0	2893961..2894194	+	77	114800484	-	HNE_2730	-	hypothetical protein
2677	 65.14	0	2894198..2894524	-	108	114798505	-	HNE_2731	-	cupin domain-containing protein
2678	 66.16	+1	2894729..2895523	+	264	114800124	-	HNE_2732	-	hypothetical protein
2679	 61.99	0	2895520..2896974	-	484	114797151	-	HNE_2733	-	putative potassium uptake protein TrkH
2680	 56.77	-1	2897012..2897203	-	63	114798091	-	HNE_2734	-	hypothetical protein
2681	 62.78	0	2897114..2898169	+	351	114798110	ldh2	HNE_2735	-	leucine dehydrogenase
2682	 65.10	0	2898256..2899086	+	276	114799771	-	HNE_2736	-	universal stress protein family protein
2683	 61.75	0	2899111..2899476	+	121	114797452	-	HNE_2737	-	hypothetical protein
2684	 62.50	0	2899705..2900592	-	295	114798207	-	HNE_2739	-	pyridine nucleotide-disulfide oxidoreductase
2685	 61.26	0	2900597..2901040	-	147	114798919	-	HNE_2740	-	hypothetical protein
2686	 63.38	0	2901154..2903799	-	881	114800099	alaS	HNE_2741	-	alanyl-tRNA synthetase
2687	 59.38	0	2903977..2905047	-	356	114797171	recA	HNE_2742	-	recA protein
2688	 60.71	0	2905185..2905436	+	83	114797746	-	HNE_2743	-	hypothetical protein
2689	 67.64	+1	2905433..2906254	+	273	114798722	-	HNE_2744	-	hypothetical protein
2690	 62.83	0	2906263..2908296	-	677	114799304	-	HNE_2745	-	hypothetical protein
2691	 66.46	+1	2908410..2909387	-	325	114798399	-	HNE_2746	-	putative quinone oxidoreductase
2692	 62.33	0	2909515..2909883	+	122	114799657	-	HNE_2747	-	glyoxalase family protein
2693	 62.45	0	2909911..2910171	-	86	114799956	-	HNE_2748	-	hypothetical protein
2694	 64.39	0	2910171..2910959	-	262	114797602	-	HNE_2749	-	enoyl-CoA hydratase/isomerase family protein
2695	 61.39	0	2910960..2911736	-	258	114797526	-	HNE_2750	-	TerC family membrane protein
2696	 63.31	0	2911879..2912862	+	327	114800471	-	HNE_2751	-	putative epoxide hydrolase
2697	 59.34	0	2912977..2913699	+	240	114800515	-	HNE_2752	-	hypothetical protein
2698	 64.64	0	2913791..2914432	-	213	114798996	-	HNE_2753	-	hypothetical protein
2699	 66.28	+1	2914580..2915353	-	257	114798016	-	HNE_2754	-	NAD dependent epimerase/dehydratase family protein
2700	 66.03	+1	2915483..2916106	+	207	114797072	rnhB	HNE_2755	-	ribonuclease HIII
2701	 64.54	0	2916153..2916623	+	156	114799084	-	HNE_2756	-	GIY-YIG domain-containing protein
2702	 67.61	+1	2916630..2917685	-	351	114797801	queA	HNE_2757	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
2703	 62.80	0	2917718..2918701	-	327	114800546	-	HNE_2758	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
2704	 56.22	-1	2918698..2919195	-	165	114799402	coaD	HNE_2759	-	pantetheine-phosphate adenylyltransferase
2705	 63.75	0	2919249..2922029	-	926	114798624	gyrA	HNE_2760	-	DNA gyrase, A subunit
2706	 69.98	+2	2922207..2923262	+	351	114798250	-	HNE_2761	-	kelch repeat-containing protein
2707	 63.64	0	2923295..2923954	+	219	114800326	-	HNE_2762	-	glutathione S-transferase
2708	 67.03	+1	2923963..2924784	-	273	114799804	-	HNE_2763	-	putative beta-lactamase
2709	 62.20	0	2924846..2925337	-	163	114797480	ssb	HNE_2764	-	single-strand binding protein
2710	 61.90	0	2925564..2928542	+	992	114798706	uvrA	HNE_2765	-	excinuclease ABC, A subunit
2711	 60.86	0	2928560..2929540	-	326	114799509	-	HNE_2766	-	hypothetical protein
2712	 65.20	0	2929595..2930410	-	271	114800262	-	HNE_2767	-	hypothetical protein
2713	 62.39	0	2930509..2931912	+	467	114797503	gid	HNE_2768	-	tRNA (uracil-5-)-methyltransferase Gid
2714	 62.50	0	2931918..2932805	+	295	114797440	-	HNE_2769	-	PP-loop family protein
2715	 61.55	0	2932806..2934095	-	429	114799393	-	HNE_2770	-	acyl-CoA dehydrogenase family protein
2716	 67.58	+1	2934191..2935504	-	437	114799900	-	HNE_2771	-	putative DNA-damage-inducible protein F
2717	 61.37	0	2935604..2936905	-	433	114797831	-	HNE_2772	-	acyl-CoA dehydrogenase family protein
2718	 65.06	0	2937036..2937782	+	248	114799162	-	HNE_2773	-	hypothetical protein
2719	 65.66	0	2937953..2938846	+	297	114799906	-	HNE_2774	-	LysR family transcriptional regulator
2720	 65.23	0	2938870..2940606	-	578	114800280	-	HNE_2775	-	glutathione-regulated potassium-efflux system protein
2721	 70.07	+2	2940664..2941104	-	146	114798136	-	HNE_2776	-	cytidine/deoxycytidylate deaminase family protein
2722	 64.28	0	2941194..2941862	-	222	114799259	-	HNE_2777	-	enoyl-CoA hydratase/isomerase family protein
2723	 67.56	+1	2942008..2942568	+	186	114800273	-	HNE_2778	-	putative methyltransferase
2724	 62.80	0	2942565..2942978	-	137	114797727	-	HNE_2779	-	hypothetical protein
2725	 62.98	0	2943054..2944085	-	343	114797322	-	HNE_2780	-	patatin family phospholipase
2726	 70.74	+2	2944171..2945421	+	416	114799366	-	HNE_2781	-	putative 23S rRNA (uracil-5-)-methyltransferase RumA
2727	 69.80	+2	2945418..2945864	+	148	114798768	-	HNE_2782	-	NUDIX family hydrolase NudH subfamily hydrolase
2728	 63.61	0	2946035..2946820	+	261	114797788	-	HNE_2783	-	short chain dehydrogenase/reductase family oxidoreductase
2729	 58.48	0	2946938..2947267	+	109	114799889	-	HNE_2784	-	hypothetical protein
2730	 57.22	-1	2947385..2947744	-	119	114798807	-	HNE_2785	-	hypothetical protein
2731	 63.60	0	2947962..2948939	+	325	114798273	-	HNE_2786	-	trans-2-enoyl-ACP reductase II
2732	 59.20	0	2948987..2949991	-	334	114800373	corA	HNE_2787	-	magnesium and cobalt transport protein CorA
2733	 61.84	0	2950058..2951239	-	393	114799604	-	HNE_2788	-	glucose/sorbosone family dehydrogenase
2734	 64.06	0	2951264..2952259	-	331	114798418	-	HNE_2789	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
2735	 62.56	0	2952239..2952676	+	145	114799433	-	HNE_2790	-	hypothetical protein
2736	 65.46	0	2952673..2954583	+	636	114798236	ggt1	HNE_2791	-	gamma-glutamyltransferase
2737	 64.09	0	2954573..2955232	+	219	114797491	-	HNE_2792	-	uracil-DNA glycosylase family protein
2738	 63.85	0	2955229..2955867	-	212	114799696	-	HNE_2793	-	TetR family transcriptional regulator
62.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.