IslandPathversion 1.0

IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.10 STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2223	 66.27	+1	2365737..2366756	-	339	114800481	-	HNE_2262	-	hypothetical protein
2224	 64.92	0	2366903..2367931	+	342	114798932	purM	HNE_2263	-	phosphoribosylformylglycinamidine cyclo-ligase
2225	 65.64	0	2367928..2368512	+	194	114797986	purN	HNE_2264	-	phosphoribosylglycinamide formyltransferase
2226	 64.13	0	2368620..2368934	+	104	114798803	-	HNE_2265	-	hypothetical protein
2227	 62.60	0	2368931..2369962	+	343	114798815	-	HNE_2266	-	zinc-binding dehydrogenase family oxidoreductase
2228	 60.33	0	2369969..2370394	-	141	114799837	-	HNE_2267	-	hypothetical protein
2229	 58.91	0	2370394..2370741	-	115	114797737	-	HNE_2268	-	hypothetical protein
2230	 61.70	0	2371007..2371429	-	140	114798716	ndk	HNE_2269	-	nucleoside diphosphate kinase
2231	 63.10	0	2371581..2371916	+	111	114799351	-	HNE_2270	-	hypothetical protein
2232	 55.19	-1	2372236..2372688	+	150	114797382	-	HNE_2271	-	acetyltransferase
2233	 66.67	+1	2372760..2373230	-	156	114798143	-	HNE_2272	-	putative DNA polymerase III chi subunit
2234	 65.17	0	2373332..2374798	-	488	114798964	-	HNE_2273	-	M17 family peptidase
2235	 61.85	0	2374920..2376062	+	380	114799726	-	HNE_2274	-	putative permease
2236	 62.66	0	2376062..2377183	+	373	114797396	-	HNE_2275	-	YjgP/YjgQ permease
2237	 62.52	0	2377254..2379833	+	859	114799315	topA	HNE_2276	-	DNA topoisomerase I
2238	 60.77	0	2379899..2380237	+	112	114797090	-	HNE_2277	-	hypothetical protein
2239	 65.28	0	2380257..2380616	-	119	114798135	-	HNE_2278	-	hypothetical protein
2240	 67.50	+1	2380303..2380662	+	119	114799106	-	HNE_2279	-	hypothetical protein
2241	 64.92	0	2380722..2383016	+	764	114800052	rnr	HNE_2280	-	ribonuclease R
2242	 67.22	+1	2383121..2383837	+	238	114797540	-	HNE_2281	-	NUDIX family hydrolase
2243	 50.60	-2	2383994..2384161	+	55	114798587	rpmG	HNE_2282	-	50S ribosomal protein L33
2244	 65.04	0	2384225..2385451	-	408	114799591	-	HNE_2283	-	major facilitator transporter
2245	 64.18	0	2385513..2386880	-	455	114798852	pleD	HNE_2284	-	response regulator PleD
2246	 58.84	0	2386877..2387272	-	131	114799980	-	HNE_2285	-	cell division response regulator DivK
2247	 63.69	0	2387408..2388682	+	424	114798874	-	HNE_2286	-	DNA polymerase IV
2248	 65.80	+1	2388738..2389199	+	153	114798769	-	HNE_2287	-	putative endoribonuclease L-PSP
2249	 66.80	+1	2389208..2389942	+	244	114797187	-	HNE_2288	-	glycerophosphoryl diester phosphodiesterase family protein
2250	 62.62	0	2389954..2391114	+	386	114799871	-	HNE_2289	-	hypothetical protein
2251	 60.92	0	2391123..2391557	+	144	114799198	-	HNE_2290	-	histidine triad family protein
2252	 60.97	0	2391615..2393123	-	502	114798220	gatB	HNE_2291	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
2253	 66.11	+1	2393216..2393755	-	179	114800360	-	HNE_2292	-	hypothetical protein
2254	 62.73	0	2393715..2395187	-	490	114799311	gatA	HNE_2293	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
2255	 62.88	0	2395231..2395758	+	175	114798765	-	HNE_2294	-	hypothetical protein
2256	 57.81	-1	2395813..2396196	+	127	114797783	-	HNE_2295	-	SET domain-containing protein
2257	 64.12	0	2396245..2397384	+	379	114799439	-	HNE_2296	-	zinc-binding dehydrogenase family oxidoreductase
2258	 53.66	-2	2397501..2397746	+	81	114797865	-	HNE_2298	-	hypothetical protein
2259	 53.49	-2	2397558..2397686	-	42	114798687	-	HNE_2297	-	hypothetical protein
2260	 61.11	0	2397803..2398090	-	95	114800240	gatC	HNE_2299	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
2261	 68.20	+1	2398166..2398621	+	151	114799411	-	HNE_2300	-	hypothetical protein
2262	 68.82	+1	2398618..2399544	+	308	114797332	-	HNE_2301	-	auxin efflux carrier family protein
2263	 63.71	0	2399600..2400547	+	315	114800183	pyrB	HNE_2302	-	aspartate carbamoyltransferase
2264	 66.74	+1	2400544..2401824	+	426	114798896	-	HNE_2303	-	putative dihydroorotase
2265	 65.51	0	2401828..2403303	+	491	114799781	-	HNE_2304	-	MATE efflux family protein
2266	 61.19	0	2403384..2403785	+	133	114798590	-	HNE_2305	-	hypothetical protein
2267	 62.50	0	2403764..2404363	+	199	114797263	-	HNE_2306	-	acetyltransferase
2268	 64.26	0	2404423..2406087	+	554	114798019	-	HNE_2307	-	M20/M25/M40 family peptidase
2269	 62.34	0	2406268..2407815	+	515	114799617	-	HNE_2308	-	AMP-binding protein
2270	 64.78	0	2407964..2408917	-	317	114800431	glpX	HNE_2309	-	fructose 1,6-bisphosphatase II
2271	 65.58	0	2408970..2410253	-	427	114797674	hom	HNE_2310	-	homoserine dehydrogenase
2272	 63.87	0	2410768..2411982	-	404	114798447	-	HNE_2311	-	aminotransferase, classes I and II
2273	 60.71	0	2411990..2412409	-	139	114797962	-	HNE_2312	-	putative lipoprotein
2274	 61.76	0	2412480..2414312	+	610	114799177	-	HNE_2313	-	PHA/PHB synthase family protein
2275	 61.86	0	2414341..2415276	-	311	114800501	argC	HNE_2314	-	N-acetyl-gamma-glutamyl-phosphate reductase
2276	 62.73	0	2415362..2415844	-	160	114800252	rpsI	HNE_2315	-	30S ribosomal protein S9
2277	 57.85	-1	2415852..2416316	-	154	114797444	rplM	HNE_2316	-	50S ribosomal protein L13
2278	 66.41	+1	2416534..2417319	+	261	114797290	-	HNE_2317	-	hypothetical protein
2279	 66.57	+1	2417303..2418358	-	351	114800338	-	HNE_2318	-	cytochrome c oxidase assembly protein
2280	 65.64	0	2418373..2418663	+	96	114798793	-	HNE_2319	-	hypothetical protein
2281	 62.59	0	2418981..2419568	-	195	114799297	-	HNE_2320	-	TetR family transcriptional regulator
2282	 67.15	+1	2419779..2421032	+	417	114798989	-	HNE_2321	-	putative 4-hydroxybutyrate coenzyme A transferase
2283	 63.47	0	2421091..2422029	-	312	114799493	-	HNE_2322	-	ISHne5, transposase
2284	 63.33	0	2422353..2423522	-	389	114797462	-	HNE_2323	-	CAIB/BAIF family protein
2285	 63.18	0	2423535..2423936	-	133	114798214	-	HNE_2324	-	thioesterase family protein
2286	 63.45	0	2424101..2425561	+	486	114799189	gabD	HNE_2325	-	succinate-semialdehyde dehydrogenase
2287	 61.30	0	2425571..2426353	-	260	114797938	-	HNE_2326	-	AraC family transcriptional regulator
2288	 61.43	0	2426533..2427258	-	241	114798869	-	HNE_2327	-	hypothetical protein
2289	 62.71	0	2427315..2430548	-	1077	114798295	-	HNE_2328	-	amidohydrolase family protein
2290	 55.36	-1	2430629..2432803	-	724	114797335	-	HNE_2329	-	outer membrane receptor (OMR) family protein
2291	 61.17	0	2433047..2434246	+	399	114800312	-	HNE_2330	-	PepSY-associated TM helix domain-containing protein
2292	 68.54	+1	2434306..2435265	+	319	114799294	-	HNE_2331	-	alpha/beta fold family hydrolase
2293	 67.19	+1	2435262..2435834	+	190	114798709	-	HNE_2332	-	hypothetical protein
2294	 67.10	+1	2435856..2437466	+	536	114799705	pruA	HNE_2333	-	1-pyrroline-5-carboxylate dehydrogenase
2295	 65.40	0	2437466..2438887	+	473	114798937	-	HNE_2334	-	sodium/alanine symporter family protein
2296	 61.78	0	2439072..2440484	-	470	114800328	-	HNE_2335	-	aldehyde dehydrogenase family protein
2297	 59.33	0	2441015..2441818	-	267	114799578	-	HNE_2336	-	Ser/Thr protein phosphatase family protein
2298	 59.93	0	2441815..2442660	-	281	114799260	-	HNE_2337	-	hypothetical protein
2299	 54.58	-2	2442664..2442936	-	90	114800505	-	HNE_2338	-	hypothetical protein
2300	 61.18	0	2443047..2444651	-	534	114797856	-	HNE_2339	-	sensor histidine kinase
2301	 59.74	0	2444720..2445325	-	201	114798823	-	HNE_2340	-	ECF subfamily RNA polymerase sigma factor
2302	 56.67	-1	2445307..2445606	+	99	114797486	-	HNE_2342	-	hypothetical protein
2303	 57.14	-1	2445322..2445531	-	69	114798824	-	HNE_2341	-	hypothetical protein
2304	 50.79	-2	2445552..2445677	-	41	114800003	-	HNE_2343	-	hypothetical protein
2305	 58.94	0	2445725..2446513	+	262	114798202	-	HNE_2344	-	two-component response regulator
2306	 59.38	0	2446580..2446936	+	118	114797451	-	HNE_2345	-	hypothetical protein
2307	 60.46	0	2446939..2447373	+	144	114797998	-	HNE_2346	-	hypothetical protein
2308	 60.88	0	2447399..2449246	+	615	114797876	-	HNE_2347	-	TrkA domain-containing protein
2309	 56.67	-1	2449278..2449517	+	79	114798430	-	HNE_2348	-	hypothetical protein
2310	 55.70	-1	2449673..2449909	+	78	114798122	-	HNE_2349	-	CsbD-like protein
2311	 57.93	-1	2450042..2451220	-	392	114800429	-	HNE_2350	-	putative sensory box sensor histidine kinase
2312	 59.43	0	2451504..2451890	-	128	114800117	-	HNE_2351	-	regulatory protein
2313	 62.73	0	2452108..2452590	-	160	114797163	-	HNE_2352	-	hypothetical protein
2314	 62.98	0	2452659..2453417	+	252	114798493	-	HNE_2353	-	short chain dehydrogenase/reductase family oxidoreductase
2315	 58.12	-1	2453417..2454013	+	198	114799117	-	HNE_2354	-	putative 2-hydroxychromene-2-carboxylate isomerase
2316	 59.42	0	2454207..2456594	+	795	114799950	-	HNE_2355	-	TonB-dependent receptor
2317	 62.96	0	2456641..2457585	+	314	114797241	-	HNE_2356	-	hypothetical protein
2318	 59.22	0	2457587..2458741	+	384	114797469	-	HNE_2357	-	aminotransferase, classes I and II
2319	 62.43	0	2458920..2460029	+	369	114799330	-	HNE_2358	-	GGDEF/GAF domain-containing protein
2320	 62.17	0	2460054..2460431	-	125	114800331	-	HNE_2359	-	hypothetical protein
2321	 59.20	0	2460571..2460918	+	115	114797770	-	HNE_2360	-	peptidase domain-containing protein
2322	 63.80	0	2460918..2461580	+	220	114797742	-	HNE_2361	-	DNA-binding response regulator
62.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.