IslandPathversion 1.0

IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.10 STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2157	 60.63	0	2291562..2292008	-	148	114797925	-	HNE_2195	-	DoxX family protein
2158	 63.56	0	2292141..2293235	-	364	114799498	-	HNE_2196	-	short chain dehydrogenase/reductase family oxidoreductase
2159	 67.39	+1	2293336..2294025	-	229	114798698	-	HNE_2197	-	hypothetical protein
2160	 59.92	0	2294035..2294508	-	157	114799027	-	HNE_2198	-	hypothetical protein
2161	 61.58	0	2294646..2295569	-	307	114799755	-	HNE_2199	-	AraC family transcriptional regulator
2162	 59.69	0	2296179..2296637	+	152	114800410	-	HNE_2200	-	putative isoquinoline 1-oxidoreductase, alpha subunit
2163	 64.59	0	2296615..2297337	+	240	114797647	-	HNE_2201	-	hypothetical protein
2164	 62.21	0	2297397..2299526	+	709	114797470	-	HNE_2202	-	putative isoquinoline 1-oxidoreductase, beta subunit
2165	 58.55	0	2299572..2300150	-	192	114798163	-	HNE_2203	-	sulfatase domain-containing protein
2166	 60.23	0	2300264..2301304	-	346	114798933	-	HNE_2204	-	aldo/keto reductase family oxidoreductase
2167	 64.85	0	2301362..2302186	-	274	114799710	-	HNE_2205	-	short chain dehydrogenase/reductase family oxidoreductase
2168	 63.41	0	2302532..2303299	+	255	114797204	-	HNE_2206	-	GntR family transcriptional regulator
2169	 58.49	0	2303327..2304622	-	431	114798191	-	HNE_2207	-	cytochrome P450 family protein
2170	 62.08	0	2304653..2306332	-	559	114799635	-	HNE_2208	-	hypothetical protein
2171	 63.66	0	2306592..2307290	-	232	114800415	-	HNE_2209	-	TetR family transcriptional regulator
2172	 59.35	0	2307522..2309858	+	778	114797247	-	HNE_2210	-	outer membrane receptor (OMR) family protein
2173	 61.23	0	2309894..2311567	+	557	114798044	-	HNE_2211	-	sulfatase family protein
2174	 61.54	0	2311633..2312724	+	363	114800456	-	HNE_2212	-	hypothetical protein
2175	 65.71	0	2312775..2314349	-	524	114797649	-	HNE_2213	-	hypothetical protein
2176	 58.28	-1	2314436..2314864	-	142	114798316	-	HNE_2214	-	hypothetical protein
2177	 61.79	0	2314889..2316220	-	443	114798445	-	HNE_2215	-	major facilitator family transporter
2178	 62.62	0	2316492..2317430	+	312	114798660	-	HNE_2216	-	LysR family transcriptional regulator
2179	 59.22	0	2317501..2318346	-	281	114798853	-	HNE_2217	-	fumarylacetoacetate hydrolase family protein
2180	 55.56	-1	2318411..2319058	-	215	114799506	-	HNE_2218	-	putative biphenyl-2,3-diol 1,2-dioxygenase
2181	 61.61	0	2319423..2320886	+	487	114799609	-	HNE_2219	-	aldehyde dehydrogenase family protein
2182	 60.42	0	2321028..2321780	+	250	114800399	-	HNE_2220	-	class II aldolase/adducin domain-containing protein
2183	 63.13	0	2321796..2322728	-	310	114800019	-	HNE_2221	-	short chain dehydrogenase/reductase family oxidoreductase
2184	 58.84	0	2322946..2323839	-	297	114798404	-	HNE_2222	-	AraC family transcriptional regulator
2185	 64.77	0	2324003..2325319	+	438	114799244	-	HNE_2223	-	major facilitator family transporter
2186	 60.86	0	2325531..2326322	+	263	114800020	-	HNE_2224	-	MipA family protein
2187	 60.39	0	2326743..2327714	-	323	114797195	-	HNE_2225	-	aldo/keto reductase family oxidoreductase
2188	 64.17	0	2327850..2328731	+	293	114798010	-	HNE_2226	-	AraC family transcriptional regulator
2189	 62.20	0	2328883..2329374	-	163	114797318	-	HNE_2227	-	hypothetical protein
2190	 63.20	0	2329387..2330280	-	297	114798645	-	HNE_2228	-	NAD-dependent epimerase/dehydratase family protein
2191	 65.56	0	2330384..2331193	+	269	114799172	-	HNE_2229	-	putative transcriptional regulator
2192	 66.67	+1	2331874..2332653	-	259	114799955	cobA	HNE_2230	-	uroporphyrin-III C-methyltransferase
2193	 62.87	0	2332650..2333861	-	403	114800210	-	HNE_2231	-	putative lipoprotein
2194	 67.02	+1	2334064..2335206	-	380	114797910	-	HNE_2232	-	putative nitrate transporter
2195	 64.12	0	2335203..2335949	-	248	114799661	nasT	HNE_2233	-	response regulator NasT
2196	 62.99	0	2336181..2338652	+	823	114800413	nirB	HNE_2234	-	nitrite reductase [NAD(P)H], large subunit
2197	 67.82	+1	2338649..2338996	+	115	114797238	nirD	HNE_2235	-	nitrite reductase [NAD(P)H], small subunit
2198	 61.45	0	2339011..2339853	+	280	114797947	fnt	HNE_2236	-	formate/nitrite transporter
2199	 67.94	+1	2339859..2341583	+	574	114798196	-	HNE_2237	-	carbohydrate kinase
2200	 56.19	-1	2342080..2342184	-	34	114798183	-	HNE_2239	-	hypothetical protein
2201	 65.09	0	2342174..2342869	-	231	114797199	-	HNE_2240	-	hypothetical protein
2202	 66.60	+1	2342950..2344371	-	473	114800524	-	HNE_2241	-	putative chain length determinant protein
2203	 62.87	0	2344554..2345501	+	315	114799572	-	HNE_2242	-	2OG-Fe(II) oxygenase family oxidoreductase
2204	 63.59	0	2345591..2346727	+	378	114797797	-	HNE_2243	-	aminotransferase
2205	 62.84	0	2346810..2348351	-	513	114800349	pepA	HNE_2244	-	cytosol aminopeptidase
2206	 62.09	0	2348467..2349099	-	210	114799358	-	HNE_2245	-	HAD family hydrolase
2207	 64.04	0	2349106..2349903	-	265	114799032	thiG	HNE_2246	-	thiazole synthase
2208	 63.85	0	2350028..2350240	-	70	114798481	thiS	HNE_2247	-	thiamine biosynthesis protein ThiS
2209	 59.23	0	2350304..2350747	+	147	114797900	aroQ	HNE_2248	-	3-dehydroquinate dehydratase
2210	 62.21	0	2350750..2351220	+	156	114797700	accB	HNE_2249	-	acetyl-CoA carboxylase, biotin carboxyl carrier protein
2211	 62.08	0	2351222..2352595	+	457	114798573	accC	HNE_2250	-	acetyl-CoA carboxylase, biotin carboxylase
2212	 62.03	0	2352653..2353429	+	258	114797414	aat	HNE_2251	-	leucyl/phenylalanyl-tRNA--protein transferase
2213	 60.72	0	2353273..2353827	-	184	114799292	-	HNE_2252	-	hypothetical protein
2214	 60.93	0	2353824..2354381	-	185	114797425	-	HNE_2253	-	hypothetical protein
2215	 61.07	0	2354374..2354766	-	130	114798194	-	HNE_2254	-	putative NADH:ubiquinone oxidoreductase
2216	 66.27	+1	2354987..2357239	+	750	114799028	-	HNE_2255	-	ribonucleoside reductase-like protein
2217	 63.69	0	2357402..2358139	+	245	114799805	-	HNE_2256	-	pentapeptide repeat-containing protein
2218	 62.95	0	2358217..2360046	-	609	114800235	aspS	HNE_2257	-	aspartyl-tRNA synthetase
2219	 62.47	0	2360145..2361311	+	388	114797633	rnd	HNE_2258	-	ribonuclease D
2220	 61.16	0	2361319..2362806	-	495	114800396	-	HNE_2259	-	Ppx/GppA family phosphatase
2221	 59.09	0	2362803..2364980	-	725	114799243	ppk	HNE_2260	-	polyphosphate kinase
2222	 64.48	0	2365009..2365740	-	243	114798512	-	HNE_2261	-	hypothetical protein
2223	 66.27	+1	2365737..2366756	-	339	114800481	-	HNE_2262	-	hypothetical protein
2224	 64.92	0	2366903..2367931	+	342	114798932	purM	HNE_2263	-	phosphoribosylformylglycinamidine cyclo-ligase
2225	 65.64	0	2367928..2368512	+	194	114797986	purN	HNE_2264	-	phosphoribosylglycinamide formyltransferase
2226	 64.13	0	2368620..2368934	+	104	114798803	-	HNE_2265	-	hypothetical protein
2227	 62.60	0	2368931..2369962	+	343	114798815	-	HNE_2266	-	zinc-binding dehydrogenase family oxidoreductase
2228	 60.33	0	2369969..2370394	-	141	114799837	-	HNE_2267	-	hypothetical protein
2229	 58.91	0	2370394..2370741	-	115	114797737	-	HNE_2268	-	hypothetical protein
2230	 61.70	0	2371007..2371429	-	140	114798716	ndk	HNE_2269	-	nucleoside diphosphate kinase
2231	 63.10	0	2371581..2371916	+	111	114799351	-	HNE_2270	-	hypothetical protein
2232	 55.19	-1	2372236..2372688	+	150	114797382	-	HNE_2271	-	acetyltransferase
2233	 66.67	+1	2372760..2373230	-	156	114798143	-	HNE_2272	-	putative DNA polymerase III chi subunit
2234	 65.17	0	2373332..2374798	-	488	114798964	-	HNE_2273	-	M17 family peptidase
2235	 61.85	0	2374920..2376062	+	380	114799726	-	HNE_2274	-	putative permease
2236	 62.66	0	2376062..2377183	+	373	114797396	-	HNE_2275	-	YjgP/YjgQ permease
2237	 62.52	0	2377254..2379833	+	859	114799315	topA	HNE_2276	-	DNA topoisomerase I
2238	 60.77	0	2379899..2380237	+	112	114797090	-	HNE_2277	-	hypothetical protein
2239	 65.28	0	2380257..2380616	-	119	114798135	-	HNE_2278	-	hypothetical protein
2240	 67.50	+1	2380303..2380662	+	119	114799106	-	HNE_2279	-	hypothetical protein
2241	 64.92	0	2380722..2383016	+	764	114800052	rnr	HNE_2280	-	ribonuclease R
2242	 67.22	+1	2383121..2383837	+	238	114797540	-	HNE_2281	-	NUDIX family hydrolase
2243	 50.60	-2	2383994..2384161	+	55	114798587	rpmG	HNE_2282	-	50S ribosomal protein L33
2244	 65.04	0	2384225..2385451	-	408	114799591	-	HNE_2283	-	major facilitator transporter
2245	 64.18	0	2385513..2386880	-	455	114798852	pleD	HNE_2284	-	response regulator PleD
2246	 58.84	0	2386877..2387272	-	131	114799980	-	HNE_2285	-	cell division response regulator DivK
2247	 63.69	0	2387408..2388682	+	424	114798874	-	HNE_2286	-	DNA polymerase IV
2248	 65.80	+1	2388738..2389199	+	153	114798769	-	HNE_2287	-	putative endoribonuclease L-PSP
2249	 66.80	+1	2389208..2389942	+	244	114797187	-	HNE_2288	-	glycerophosphoryl diester phosphodiesterase family protein
2250	 62.62	0	2389954..2391114	+	386	114799871	-	HNE_2289	-	hypothetical protein
2251	 60.92	0	2391123..2391557	+	144	114799198	-	HNE_2290	-	histidine triad family protein
2252	 60.97	0	2391615..2393123	-	502	114798220	gatB	HNE_2291	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
2253	 66.11	+1	2393216..2393755	-	179	114800360	-	HNE_2292	-	hypothetical protein
2254	 62.73	0	2393715..2395187	-	490	114799311	gatA	HNE_2293	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
2255	 62.88	0	2395231..2395758	+	175	114798765	-	HNE_2294	-	hypothetical protein
2256	 57.81	-1	2395813..2396196	+	127	114797783	-	HNE_2295	-	SET domain-containing protein
62.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.