IslandPathversion 1.0

IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.10 STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2099	 63.96	0	2220645..2221382	+	245	114799043	-	HNE_2136	-	short chain dehydrogenase/reductase family oxidoreductase
2100	 60.85	0	2221394..2222236	+	280	114800260	-	HNE_2137	-	fumarylacetoacetate hydrolase family protein
2101	 61.81	0	2222440..2223036	+	198	114797731	-	HNE_2138	-	Ttg2 family toluene tolerance protein
2102	 59.97	0	2223118..2223819	-	233	114798728	-	HNE_2139	-	hypothetical protein
2103	 65.92	+1	2223824..2225575	-	583	114800018	-	HNE_2140	-	hypothetical protein
2104	 64.38	0	2225572..2226270	-	232	114799219	-	HNE_2141	-	putative lipoprotein
2105	 62.12	0	2226270..2228072	-	600	114799678	-	HNE_2142	-	Hep_Hag repeat-containing protein
2106	 62.12	0	2228151..2228876	+	241	114799836	-	HNE_2143	-	ECF sigma factor family protein
2107	 66.04	+1	2228827..2231238	-	803	114798457	-	HNE_2144	-	serine/threonine protein kinase
2108	 63.15	0	2231426..2231965	+	179	114799644	-	HNE_2145	-	putative lipoprotein
2109	 64.28	0	2231971..2234148	-	725	114798261	ptrB	HNE_2146	-	protease II
2110	 66.67	+1	2234601..2235224	+	207	114797074	-	HNE_2147	-	hypothetical protein
2111	 69.27	+1	2235221..2236336	+	371	114799220	dprA	HNE_2148	-	DNA protecting protein DprA
2112	 61.10	0	2236584..2238794	+	736	114798255	-	HNE_2149	-	hypothetical protein
2113	 61.94	0	2238936..2240183	+	415	114797858	-	HNE_2150	-	peptidyl-prolyl cis-trans isomerase domain-containing protein
2114	 65.87	+1	2240235..2241242	+	335	114798861	pdxA	HNE_2151	-	4-hydroxythreonine-4-phosphate dehydrogenase
2115	 64.10	0	2241239..2242096	+	285	114799371	ksgA	HNE_2152	-	dimethyladenosine transferase
2116	 61.01	0	2242093..2242746	-	217	114798626	-	HNE_2153	-	putative guanylate kinase
2117	 62.71	0	2242736..2243620	-	294	114798477	-	HNE_2154	-	hypothetical protein
2118	 57.90	-1	2243620..2244657	-	345	114800253	-	HNE_2155	-	hypothetical protein
2119	 60.06	0	2244883..2246169	-	428	114798980	fabF	HNE_2156	-	3-oxoacyl-[acyl-carrier-protein] synthase II
2120	 52.99	-2	2246184..2246417	-	77	114798204	acpP3	HNE_2157	-	acyl carrier protein
2121	 58.67	0	2246530..2247267	-	245	114797161	fabG	HNE_2158	-	3-oxoacyl-(acyl-carrier-protein) reductase
2122	 52.20	-2	2247271..2247429	-	52	114799680	-	HNE_2159	-	hypothetical protein
2123	 63.72	0	2247432..2248382	-	316	114799413	fabD	HNE_2160	-	malonyl CoA-acyl carrier protein transacylase
2124	 57.23	-1	2248596..2248934	+	112	114800162	rpsF	HNE_2161	-	ribosomal protein S6
2125	 54.26	-2	2248955..2249212	+	85	114797845	rpsR	HNE_2162	-	ribosomal protein S18
2126	 61.37	0	2249225..2249809	+	194	114798663	rplI	HNE_2163	-	ribosomal protein L9
2127	 61.03	0	2249981..2251471	+	496	114797768	dnaB	HNE_2164	-	replicative DNA helicase
2128	 64.81	0	2251474..2251959	-	161	114798747	-	HNE_2165	-	CinA domain-containing protein
2129	 60.73	0	2251987..2252895	-	302	114799733	-	HNE_2166	-	enoyl-CoA hydratase/isomerase family protein
2130	 62.22	0	2253044..2254348	+	434	114797205	-	HNE_2167	-	amidohydrolase family protein
2131	 60.51	0	2254361..2255350	+	329	114798176	-	HNE_2168	-	hypothetical protein
2132	 66.47	+1	2255386..2256873	-	495	114799121	cobQ	HNE_2169	-	cobyric acid synthase CobQ
2133	 61.90	0	2256971..2257369	-	132	114797365	-	HNE_2170	-	hypothetical protein
2134	 52.90	-2	2257505..2257642	-	45	114798321	-	HNE_2171	-	hypothetical protein
2135	 58.47	0	2257608..2257790	-	60	114800469	-	HNE_2172	-	hypothetical protein
2136	 59.19	0	2257787..2258923	-	378	114799735	-	HNE_2173	-	PepSY-associated TM helix domain-containing protein
2137	 61.67	0	2258935..2261115	-	726	114798388	-	HNE_2174	-	TonB-dependent receptor family protein
2138	 58.20	-1	2262534..2264033	-	499	114797369	mmsA2	HNE_2176	-	methylmalonate-semialdehyde dehydrogenase
2139	 53.45	-2	2264088..2265698	-	536	114799711	-	HNE_2177	-	putative symporter YidK
2140	 56.98	-1	2265873..2267390	+	505	114798724	-	HNE_2178	-	sulfatase family protein
2141	 59.41	0	2267474..2268934	-	486	114800451	-	HNE_2179	-	putative lipoprotein
2142	 56.13	-1	2269081..2271357	-	758	114799262	-	HNE_2180	-	outer membrane receptor (OMR) family protein
2143	 56.68	-1	2271561..2272391	+	276	114798245	-	HNE_2181	-	SIS domain-containing protein
2144	 58.41	-1	2272534..2274447	+	637	114797675	iolC	HNE_2182	-	kinase IolC
2145	 58.86	0	2274466..2276310	+	614	114798854	iolD	HNE_2183	-	thiamine pyrophosphate-dependent enzyme IolD
2146	 58.20	-1	2276323..2277231	+	302	114798293	iolE	HNE_2184	-	2-keto-myo-inositol dehydratase
2147	 59.80	0	2277224..2278024	+	266	114797478	iolB	HNE_2185	-	myo-inositol catabolism protein IolB
2148	 57.69	-1	2278092..2279216	+	374	114799793	-	HNE_2186	-	oxidoreductase, NAD-binding
2149	 63.65	0	2280613..2282400	+	595	114797632	-	HNE_2187	-	putative outer membrane efflux protein
2150	 58.33	-1	2282460..2283143	+	227	114800395	-	HNE_2188	-	DNA-binding heavy metal response regulator
2151	 62.02	0	2283140..2284495	+	451	114798801	-	HNE_2189	-	heavy metal sensor histidine kinase
2152	 62.01	0	2284598..2287774	-	1058	114797722	-	HNE_2190	-	AcrB/AcrD/AcrF family protein
2153	 66.30	+1	2287828..2288928	-	366	114797259	-	HNE_2191	-	RND family efflux transporter MFP subunit
2154	 63.61	0	2289126..2290040	-	304	114799757	-	HNE_2192	-	short chain dehydrogenase/reductase family oxidoreductase
2155	 58.28	-1	2290265..2290729	+	154	114800040	-	HNE_2193	-	MarR family transcriptional regulator
2156	 62.38	0	2290726..2291541	+	271	114798483	-	HNE_2194	-	hypothetical protein
2157	 60.63	0	2291562..2292008	-	148	114797925	-	HNE_2195	-	DoxX family protein
2158	 63.56	0	2292141..2293235	-	364	114799498	-	HNE_2196	-	short chain dehydrogenase/reductase family oxidoreductase
2159	 67.39	+1	2293336..2294025	-	229	114798698	-	HNE_2197	-	hypothetical protein
2160	 59.92	0	2294035..2294508	-	157	114799027	-	HNE_2198	-	hypothetical protein
2161	 61.58	0	2294646..2295569	-	307	114799755	-	HNE_2199	-	AraC family transcriptional regulator
2162	 59.69	0	2296179..2296637	+	152	114800410	-	HNE_2200	-	putative isoquinoline 1-oxidoreductase, alpha subunit
2163	 64.59	0	2296615..2297337	+	240	114797647	-	HNE_2201	-	hypothetical protein
2164	 62.21	0	2297397..2299526	+	709	114797470	-	HNE_2202	-	putative isoquinoline 1-oxidoreductase, beta subunit
2165	 58.55	0	2299572..2300150	-	192	114798163	-	HNE_2203	-	sulfatase domain-containing protein
2166	 60.23	0	2300264..2301304	-	346	114798933	-	HNE_2204	-	aldo/keto reductase family oxidoreductase
2167	 64.85	0	2301362..2302186	-	274	114799710	-	HNE_2205	-	short chain dehydrogenase/reductase family oxidoreductase
2168	 63.41	0	2302532..2303299	+	255	114797204	-	HNE_2206	-	GntR family transcriptional regulator
2169	 58.49	0	2303327..2304622	-	431	114798191	-	HNE_2207	-	cytochrome P450 family protein
2170	 62.08	0	2304653..2306332	-	559	114799635	-	HNE_2208	-	hypothetical protein
2171	 63.66	0	2306592..2307290	-	232	114800415	-	HNE_2209	-	TetR family transcriptional regulator
2172	 59.35	0	2307522..2309858	+	778	114797247	-	HNE_2210	-	outer membrane receptor (OMR) family protein
2173	 61.23	0	2309894..2311567	+	557	114798044	-	HNE_2211	-	sulfatase family protein
2174	 61.54	0	2311633..2312724	+	363	114800456	-	HNE_2212	-	hypothetical protein
2175	 65.71	0	2312775..2314349	-	524	114797649	-	HNE_2213	-	hypothetical protein
2176	 58.28	-1	2314436..2314864	-	142	114798316	-	HNE_2214	-	hypothetical protein
2177	 61.79	0	2314889..2316220	-	443	114798445	-	HNE_2215	-	major facilitator family transporter
2178	 62.62	0	2316492..2317430	+	312	114798660	-	HNE_2216	-	LysR family transcriptional regulator
2179	 59.22	0	2317501..2318346	-	281	114798853	-	HNE_2217	-	fumarylacetoacetate hydrolase family protein
2180	 55.56	-1	2318411..2319058	-	215	114799506	-	HNE_2218	-	putative biphenyl-2,3-diol 1,2-dioxygenase
2181	 61.61	0	2319423..2320886	+	487	114799609	-	HNE_2219	-	aldehyde dehydrogenase family protein
2182	 60.42	0	2321028..2321780	+	250	114800399	-	HNE_2220	-	class II aldolase/adducin domain-containing protein
2183	 63.13	0	2321796..2322728	-	310	114800019	-	HNE_2221	-	short chain dehydrogenase/reductase family oxidoreductase
2184	 58.84	0	2322946..2323839	-	297	114798404	-	HNE_2222	-	AraC family transcriptional regulator
2185	 64.77	0	2324003..2325319	+	438	114799244	-	HNE_2223	-	major facilitator family transporter
2186	 60.86	0	2325531..2326322	+	263	114800020	-	HNE_2224	-	MipA family protein
2187	 60.39	0	2326743..2327714	-	323	114797195	-	HNE_2225	-	aldo/keto reductase family oxidoreductase
2188	 64.17	0	2327850..2328731	+	293	114798010	-	HNE_2226	-	AraC family transcriptional regulator
2189	 62.20	0	2328883..2329374	-	163	114797318	-	HNE_2227	-	hypothetical protein
2190	 63.20	0	2329387..2330280	-	297	114798645	-	HNE_2228	-	NAD-dependent epimerase/dehydratase family protein
2191	 65.56	0	2330384..2331193	+	269	114799172	-	HNE_2229	-	putative transcriptional regulator
2192	 66.67	+1	2331874..2332653	-	259	114799955	cobA	HNE_2230	-	uroporphyrin-III C-methyltransferase
2193	 62.87	0	2332650..2333861	-	403	114800210	-	HNE_2231	-	putative lipoprotein
2194	 67.02	+1	2334064..2335206	-	380	114797910	-	HNE_2232	-	putative nitrate transporter
2195	 64.12	0	2335203..2335949	-	248	114799661	nasT	HNE_2233	-	response regulator NasT
2196	 62.99	0	2336181..2338652	+	823	114800413	nirB	HNE_2234	-	nitrite reductase [NAD(P)H], large subunit
2197	 67.82	+1	2338649..2338996	+	115	114797238	nirD	HNE_2235	-	nitrite reductase [NAD(P)H], small subunit
2198	 61.45	0	2339011..2339853	+	280	114797947	fnt	HNE_2236	-	formate/nitrite transporter
62.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.