IslandPathversion 1.0

IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.10 STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2029	 63.45	0	2138600..2139220	+	206	114798002	-	HNE_2065	-	hypothetical protein
2030	 62.58	0	2139217..2140023	-	268	114799236	-	HNE_2066	-	NUDIX family hydrolase
2031	 64.01	0	2140138..2140815	+	225	114799143	-	HNE_2067	-	hypothetical protein
2032	 64.95	0	2140812..2141975	-	387	114800125	-	HNE_2068	-	hypothetical protein
2033	 60.61	0	2142130..2143467	-	445	114797334	tig	HNE_2069	-	trigger factor
2034	 61.37	0	2144027..2145481	+	484	114798555	-	HNE_2070	-	hypothetical protein
2035	 61.15	0	2145478..2145876	+	132	114798772	-	HNE_2071	-	hypothetical protein
2036	 58.78	0	2146064..2147533	+	489	114799530	algI	HNE_2072	-	alginate biosynthesis protein AlgI
2037	 58.56	0	2147496..2148593	+	365	114798963	-	HNE_2073	-	hypothetical protein
2038	 55.69	-1	2148615..2148860	+	81	114799754	acpP2	HNE_2074	-	acyl carrier protein
2039	 62.66	0	2148908..2150155	+	415	114797975	-	HNE_2075	-	AMP-binding domain-containing protein
2040	 60.98	0	2150188..2150925	+	245	114798063	-	HNE_2076	-	short chain dehydrogenase/reductase family oxidoreductase
2041	 61.51	0	2150926..2152224	-	432	114800405	-	HNE_2077	-	hypothetical protein
2042	 59.37	0	2152624..2153130	+	168	114797560	-	HNE_2079	-	acetyltransferase
2043	 65.42	0	2153133..2154575	-	480	114799199	-	HNE_2080	-	carbohydrate kinase family protein
2044	 63.89	0	2154583..2155122	-	179	114799998	-	HNE_2081	-	phosphoglycerate mutase family protein
2045	 60.25	0	2155119..2155928	-	269	114797257	-	HNE_2082	-	hypothetical protein
2046	 55.16	-1	2156180..2156518	+	112	114797943	glnB	HNE_2083	-	nitrogen regulatory protein P-II
2047	 59.54	0	2156598..2158001	+	467	114800384	glnA	HNE_2084	-	glutamine synthetase, type I
2048	 61.15	0	2158088..2159011	+	307	114797373	-	HNE_2085	-	Ser/Thr protein phosphatase family protein
2049	 60.02	0	2159071..2160333	-	420	114799276	clpX	HNE_2086	-	ATP-dependent protease ATP-binding subunit
2050	 56.25	-1	2160460..2161083	-	207	114800297	clpP	HNE_2087	-	ATP-dependent Clp protease, proteolytic subunit ClpP
2051	 62.86	0	2161202..2162095	-	297	114799820	-	HNE_2088	-	hypothetical protein
2052	 63.69	0	2162105..2163211	-	368	114797324	-	HNE_2089	-	hypothetical protein
2053	 59.93	0	2163407..2165143	+	578	114800269	-	HNE_2090	-	M28 family peptidase
2054	 61.85	0	2165194..2165982	+	262	114797809	-	HNE_2091	-	hypothetical protein
2055	 61.63	0	2165979..2166911	-	310	114797562	-	HNE_2092	-	glycosyl transferase, group 2 family protein
2056	 60.95	0	2167109..2168263	-	384	114798530	-	HNE_2093	-	acyl-CoA dehydrogenase
2057	 59.72	0	2168293..2169486	-	397	114799055	-	HNE_2094	-	acyl-CoA dehydrogenase family protein
2058	 65.86	+1	2169615..2170610	-	331	114800060	-	HNE_2095	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
2059	 56.57	-1	2170750..2170947	+	65	114799806	-	HNE_2096	-	hypothetical protein
2060	 62.06	0	2170953..2171495	+	180	114798307	-	HNE_2097	-	hypothetical protein
2061	 63.93	0	2171482..2172906	-	474	114800553	pyk	HNE_2098	-	pyruvate kinase
2062	 60.97	0	2173180..2174916	+	578	114797194	-	HNE_2099	-	putative diguanylate cyclase
2063	 60.42	0	2174913..2177555	-	880	114799087	-	HNE_2100	-	putative methionine synthase
2064	 63.77	0	2177552..2177965	-	137	114800042	-	HNE_2101	-	hypothetical protein
2065	 61.00	0	2177977..2179035	-	352	114797600	-	HNE_2102	-	putative metionine synthase, homocysteine S-methyltransferase subunit
2066	 64.37	0	2179039..2179953	-	304	114798390	metF	HNE_2103	-	5,10-methylenetetrahydrofolate reductase
2067	 64.21	0	2179950..2180927	-	325	114799579	-	HNE_2104	-	ArsR family transcriptional regulator
2068	 58.46	0	2181226..2181993	+	255	114797269	-	HNE_2105	-	putative lipoprotein VacJ
2069	 56.94	-1	2182025..2182651	+	208	114798048	-	HNE_2106	-	Ttg2 family toluene tolerance protein
2070	 63.29	0	2182712..2184340	-	542	114799248	-	HNE_2107	-	p-aminobenzoyl-glutamate transporter (AbgT) family, permease protein
2071	 69.47	+2	2184688..2185614	+	308	114799944	-	HNE_2108	-	ISHne4, transposase
2072	 60.52	0	2185717..2186220	-	167	114798907	-	HNE_2109	-	hypothetical protein
2073	 67.74	+1	2186411..2187814	-	467	114800422	-	HNE_2110	-	RND efflux system outer membrane lipoprotein
2074	 63.48	0	2187811..2191011	-	1066	114799636	-	HNE_2111	-	hydrophobe/amphiphile efflux-1 family protein
2075	 65.24	0	2191076..2192266	-	396	114800257	-	HNE_2112	-	RND family efflux transporter MFP subunit
2076	 60.91	0	2192402..2192974	+	190	114797422	-	HNE_2113	-	TetR family transcriptional regulator
2077	 63.94	0	2193080..2194291	+	403	114797055	-	HNE_2114	-	hypothetical protein
2078	 62.25	0	2194360..2196531	-	723	114800097	katG	HNE_2115	-	catalase/peroxidase HPI
2079	 60.05	0	2196948..2199380	+	810	114798931	-	HNE_2116	-	TonB-dependent receptor
2080	 61.67	0	2199398..2200078	+	226	114798632	-	HNE_2117	-	2OG-Fe(II) oxygenase family oxidoreductase
2081	 67.30	+1	2200075..2201172	+	365	114797920	-	HNE_2118	-	FMN-dependent alpha-hydroxy acid dehydrogenase family protein
2082	 64.58	0	2201169..2202269	-	366	114800199	-	HNE_2119	-	aryl-alcohol dehydrogenase
2083	 58.45	0	2202382..2203026	-	214	114799254	-	HNE_2120	-	TetR family transcriptional regulator
2084	 61.10	0	2203269..2205605	-	778	114800271	-	HNE_2121	-	outer membrane receptor (OMR) family protein
2085	 59.75	0	2206157..2206315	+	52	114797887	-	HNE_2122	-	hypothetical protein
2086	 65.16	0	2206312..2207241	-	309	114797991	-	HNE_2123	-	allophanate hydrolase, subunit 2
2087	 65.24	0	2207246..2207875	-	209	114800075	-	HNE_2124	-	allophanate hydrolase, subunit 1
2088	 66.67	+1	2207872..2208624	-	250	114797321	-	HNE_2125	-	LamB/YcsF family protein
2089	 66.83	+1	2208621..2209835	-	404	114799474	-	HNE_2126	-	Mn2+/Fe2+ transporter
2090	 65.18	0	2209832..2210842	-	336	114800249	-	HNE_2127	-	hypothetical protein
2091	 60.51	0	2211196..2213763	+	855	114800361	-	HNE_2128	-	TonB-dependent receptor
2092	 59.14	0	2213774..2215222	+	482	114797787	-	HNE_2129	-	hypothetical protein
2093	 57.37	-1	2215286..2215963	+	225	114797656	-	HNE_2130	-	TetR family transcriptional regulator
2094	 61.52	0	2216085..2216861	+	258	114798458	-	HNE_2131	-	IclR family transcriptional regulator
2095	 55.76	-1	2216858..2217187	-	109	114799669	-	HNE_2132	-	hypothetical protein
2096	 61.00	0	2217511..2218815	+	434	114799021	-	HNE_2133	-	mandelate racemase/muconate lactonizing enzyme family protein
2097	 63.13	0	2218812..2219801	+	329	114797082	-	HNE_2134	-	aldo/keto reductase family oxidoreductase
2098	 63.57	0	2219804..2220643	+	279	114798305	-	HNE_2135	-	amidohydrolase family protein
2099	 63.96	0	2220645..2221382	+	245	114799043	-	HNE_2136	-	short chain dehydrogenase/reductase family oxidoreductase
2100	 60.85	0	2221394..2222236	+	280	114800260	-	HNE_2137	-	fumarylacetoacetate hydrolase family protein
2101	 61.81	0	2222440..2223036	+	198	114797731	-	HNE_2138	-	Ttg2 family toluene tolerance protein
2102	 59.97	0	2223118..2223819	-	233	114798728	-	HNE_2139	-	hypothetical protein
2103	 65.92	+1	2223824..2225575	-	583	114800018	-	HNE_2140	-	hypothetical protein
2104	 64.38	0	2225572..2226270	-	232	114799219	-	HNE_2141	-	putative lipoprotein
2105	 62.12	0	2226270..2228072	-	600	114799678	-	HNE_2142	-	Hep_Hag repeat-containing protein
2106	 62.12	0	2228151..2228876	+	241	114799836	-	HNE_2143	-	ECF sigma factor family protein
2107	 66.04	+1	2228827..2231238	-	803	114798457	-	HNE_2144	-	serine/threonine protein kinase
2108	 63.15	0	2231426..2231965	+	179	114799644	-	HNE_2145	-	putative lipoprotein
2109	 64.28	0	2231971..2234148	-	725	114798261	ptrB	HNE_2146	-	protease II
2110	 66.67	+1	2234601..2235224	+	207	114797074	-	HNE_2147	-	hypothetical protein
2111	 69.27	+1	2235221..2236336	+	371	114799220	dprA	HNE_2148	-	DNA protecting protein DprA
2112	 61.10	0	2236584..2238794	+	736	114798255	-	HNE_2149	-	hypothetical protein
2113	 61.94	0	2238936..2240183	+	415	114797858	-	HNE_2150	-	peptidyl-prolyl cis-trans isomerase domain-containing protein
2114	 65.87	+1	2240235..2241242	+	335	114798861	pdxA	HNE_2151	-	4-hydroxythreonine-4-phosphate dehydrogenase
2115	 64.10	0	2241239..2242096	+	285	114799371	ksgA	HNE_2152	-	dimethyladenosine transferase
2116	 61.01	0	2242093..2242746	-	217	114798626	-	HNE_2153	-	putative guanylate kinase
2117	 62.71	0	2242736..2243620	-	294	114798477	-	HNE_2154	-	hypothetical protein
2118	 57.90	-1	2243620..2244657	-	345	114800253	-	HNE_2155	-	hypothetical protein
2119	 60.06	0	2244883..2246169	-	428	114798980	fabF	HNE_2156	-	3-oxoacyl-[acyl-carrier-protein] synthase II
2120	 52.99	-2	2246184..2246417	-	77	114798204	acpP3	HNE_2157	-	acyl carrier protein
2121	 58.67	0	2246530..2247267	-	245	114797161	fabG	HNE_2158	-	3-oxoacyl-(acyl-carrier-protein) reductase
2122	 52.20	-2	2247271..2247429	-	52	114799680	-	HNE_2159	-	hypothetical protein
2123	 63.72	0	2247432..2248382	-	316	114799413	fabD	HNE_2160	-	malonyl CoA-acyl carrier protein transacylase
2124	 57.23	-1	2248596..2248934	+	112	114800162	rpsF	HNE_2161	-	ribosomal protein S6
2125	 54.26	-2	2248955..2249212	+	85	114797845	rpsR	HNE_2162	-	ribosomal protein S18
2126	 61.37	0	2249225..2249809	+	194	114798663	rplI	HNE_2163	-	ribosomal protein L9
2127	 61.03	0	2249981..2251471	+	496	114797768	dnaB	HNE_2164	-	replicative DNA helicase
2128	 64.81	0	2251474..2251959	-	161	114798747	-	HNE_2165	-	CinA domain-containing protein
62.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.