IslandPathversion 1.0

IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.10 STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1952	 63.26	0	2062055..2062318	-	87	114797711	-	HNE_1986	-	TPR repeat-containing protein
1953	 65.85	+1	2062535..2064613	+	692	114797135	-	HNE_1987	-	putative ATP-dependent DNA helicase recG
1954	 56.86	-1	2064619..2065332	-	237	114798373	-	HNE_1988	-	hypothetical protein
1955	 64.39	0	2065412..2066422	+	336	114799195	-	HNE_1989	-	phosphotransferase enzyme family protein
1956	 61.29	0	2066415..2066786	+	123	114800344	-	HNE_1990	-	hypothetical protein
1957	 62.96	0	2066802..2067530	+	242	114797178	-	HNE_1991	-	hypothetical protein
1958	 60.37	0	2067540..2068190	-	216	114798053	maiA	HNE_1992	-	maleylacetoacetate isomerase
1959	 60.32	0	2068187..2069509	-	440	114798889	astB	HNE_1993	-	succinylarginine dihydrolase
1960	 59.11	0	2069506..2070339	-	277	114799655	-	HNE_1994	-	putative methyltransferase
1961	 61.24	0	2070351..2071805	-	484	114799206	astD	HNE_1995	-	succinylglutamic semialdehyde dehydrogenase
1962	 60.33	0	2071805..2072845	-	346	114798484	astA	HNE_1996	-	arginine N-succinyltransferase
1963	 64.31	0	2072846..2074033	-	395	114797736	-	HNE_1997	-	hypothetical protein
1964	 61.08	0	2074218..2075381	-	387	114800514	-	HNE_1998	-	OmpA family protein
1965	 56.54	-1	2076100..2076642	-	180	114799751	nusG	HNE_2000	-	transcription termination/antitermination factor NusG
1966	 51.60	-2	2076687..2076905	-	72	114798990	secE	HNE_2001	-	preprotein translocase, SecE subunit
1967	 63.30	0	2077049..2077939	-	296	114798431	-	HNE_2002	-	senescence marker protein-30 family protein
1968	 62.20	0	2077976..2078848	-	290	114798359	-	HNE_2003	-	putative 2-dehydro-3-deoxygalactonokinase
1969	 65.34	0	2079003..2079830	+	275	114800510	-	HNE_2004	-	MazG family protein
1970	 64.94	0	2079844..2081172	-	442	114799526	-	HNE_2005	-	putative GTP-binding protein HflX
1971	 57.83	-1	2081180..2081428	-	82	114797999	hfq	HNE_2006	-	RNA-binding protein Hfq
1972	 62.47	0	2081505..2082911	-	468	114797385	-	HNE_2007	-	putative potassium uptake protein TrkH
1973	 62.74	0	2082915..2084288	-	457	114799538	trkA	HNE_2008	-	potassium transporter peripheral membrane component
1974	 63.35	0	2084313..2085698	-	461	114799003	ntrX	HNE_2009	-	sigma-54 dependent DNA-binding response regulator
1975	 62.85	0	2085712..2087991	-	759	114800247	ntrY	HNE_2010	-	nitrogen regulation protein NtrY
1976	 64.77	0	2088097..2089470	-	457	114799444	glnG	HNE_2011	-	nitrogen regulation protein NR(I)
1977	 66.38	+1	2089476..2090534	-	352	114800221	glnL	HNE_2012	-	nitrogen regulation protein NR(II)
1978	 65.61	0	2090531..2091568	-	345	114799466	-	HNE_2013	-	putative tRNA-dihydrouridine synthase
1979	 65.00	0	2091646..2092782	+	378	114798198	ispDF	HNE_2014	-	IspD/IspF bifunctional enzyme
1980	 56.73	-1	2092862..2093032	+	56	114797375	-	HNE_2015	-	hypothetical protein
1981	 65.52	0	2093046..2093831	+	261	114797752	-	HNE_2016	-	enoyl-CoA hydratase/isomerase family protein
1982	 66.67	+1	2093883..2094344	+	153	114798844	-	HNE_2017	-	CinA domain-containing protein
1983	 64.97	0	2094601..2095776	+	391	114798090	-	HNE_2018	-	ISHne2, transposase
1984	 61.18	0	2096078..2096332	-	84	114798642	-	HNE_2019	-	hypothetical protein
1985	 62.12	0	2096534..2096995	-	153	114799654	-	HNE_2020	-	cyclase/dehydrase family protein
1986	 63.64	0	2096999..2098054	-	351	114800398	lipA	HNE_2021	-	lipoyl synthase
1987	 62.82	0	2098134..2099720	+	528	114797277	aas	HNE_2022	-	2-acylglycerophosphoethanolamine acyltransferase/Acyl-[acyl-carrier-protein] synthetase
1988	 63.82	0	2099728..2100570	-	280	114798279	phaB	HNE_2023	-	poly(3-hydroxyalkanoate) depolymerase
1989	 59.15	0	2100593..2102281	-	562	114798910	-	HNE_2024	-	PHA-synthase 2
1990	 57.19	-1	2102441..2103073	+	210	114799904	phaD	HNE_2025	-	transcriptional regulator PhaD
1991	 61.11	0	2104100..2104801	+	233	114797860	-	HNE_2027	-	dienelactone hydrolase family protein
1992	 63.32	0	2104884..2105570	-	228	114798462	phoB	HNE_2028	-	phosphate regulon transcriptional regulatory protein PhoB
1993	 59.83	0	2105602..2106288	-	228	114799041	phoU	HNE_2029	-	phosphate transport system regulatory protein PhoU
1994	 62.80	0	2106300..2107127	-	275	114799554	pstB	HNE_2030	-	phosphate ABC transporter, ATP-binding protein
1995	 64.45	0	2107127..2108704	-	525	114799902	pstA	HNE_2031	-	phosphate ABC transporter, permease protein PtsA
1996	 64.62	0	2108697..2110112	-	471	114797381	pstC	HNE_2032	-	phosphate ABC transporter, permease protein
1997	 61.11	0	2110242..2110799	+	185	114798299	hslV	HNE_2033	-	ATP-dependent protease peptidase subunit
1998	 63.30	0	2110902..2112206	+	434	114800330	hslU	HNE_2034	-	ATP-dependent protease ATP-binding subunit
1999	 56.86	-1	2112217..2112675	-	152	114797758	-	HNE_2035	-	hypothetical protein
2000	 62.46	0	2112629..2113627	-	332	114798791	-	HNE_2036	-	PfkB family kinase
2001	 63.59	0	2113775..2114653	+	292	114798888	-	HNE_2037	-	hypothetical protein
2002	 63.79	0	2114650..2114997	-	115	114799858	-	HNE_2038	-	putative lipoprotein
2003	 63.29	0	2115011..2116699	-	562	114797353	-	HNE_2039	-	peptidase family protein
2004	 63.92	0	2116762..2117526	-	254	114798206	nth	HNE_2040	-	endonuclease III
2005	 63.60	0	2117572..2118060	+	162	114797443	-	HNE_2041	-	hypothetical protein
2006	 59.47	0	2118227..2119504	+	425	114799772	-	HNE_2042	-	cytochrome P450 family protein
2007	 62.95	0	2119569..2120240	+	223	114799004	-	HNE_2043	-	nitroreductase family protein
2008	 62.23	0	2120290..2120898	+	202	114799719	-	HNE_2044	-	hypothetical protein
2009	 63.40	0	2120908..2121612	-	234	114798961	-	HNE_2045	-	putative 4'-phosphopantetheinyl transferase
2010	 61.37	0	2121640..2122659	-	339	114798683	scpB	HNE_2046	-	segregation and condensation protein B
2011	 64.39	0	2122646..2123479	-	277	114797903	scpA	HNE_2047	-	segregation and condensation protein A
2012	 64.15	0	2123476..2124510	-	344	114797421	nagZ	HNE_2048	-	beta-hexosaminidase
2013	 64.20	0	2124514..2125323	-	269	114799450	-	HNE_2049	-	sporulation repeat-containing protein
2014	 62.40	0	2125427..2126599	-	390	114797343	-	HNE_2050	-	putative deoxyguanosinetriphosphate triphosphohydrolase
2015	 57.89	-1	2126627..2126968	+	113	114799698	-	HNE_2051	-	iron-sulfur cluster assembly accessory protein
2016	 62.48	0	2127283..2128452	+	389	114798159	-	HNE_2052	-	epoxide hydrolase
2017	 54.06	-2	2128568..2129392	+	274	114797350	-	HNE_2053	-	hypothetical protein
2018	 63.66	0	2129624..2130088	-	154	114800202	nusB	HNE_2054	-	transcription antitermination factor NusB
2019	 61.77	0	2130088..2130516	-	142	114799272	ribH	HNE_2055	-	6,7-dimethyl-8-ribityllumazine synthase
2020	 63.39	0	2130518..2131645	-	375	114799819	ribAB	HNE_2056	-	riboflavin biosynthesis protein RibA
2021	 63.61	0	2131649..2132269	-	206	114798806	ribE	HNE_2057	-	riboflavin synthase subunit alpha
2022	 68.81	+1	2132288..2132941	-	217	114798296	-	HNE_2058	-	riboflavin biosynthesis protein RibD domain-containing protein
2023	 61.04	0	2132938..2133417	-	159	114797364	nrdR	HNE_2059	-	NrdR family transcriptional regulator
2024	 64.60	0	2133424..2134731	-	435	114799314	glyA	HNE_2060	-	serine hydroxymethyl transferase
2025	 54.58	-2	2134770..2135348	+	192	114800329	-	HNE_2061	-	transcriptional regulator
2026	 61.82	0	2135435..2136652	-	405	114797766	hemA	HNE_2062	-	5-aminolevulinate synthase
2027	 61.99	0	2136749..2137540	-	263	114799874	-	HNE_2063	-	hypothetical protein
2028	 64.32	0	2137753..2138520	+	255	114797751	ppnK	HNE_2064	-	ATP-NAD kinase
2029	 63.45	0	2138600..2139220	+	206	114798002	-	HNE_2065	-	hypothetical protein
2030	 62.58	0	2139217..2140023	-	268	114799236	-	HNE_2066	-	NUDIX family hydrolase
2031	 64.01	0	2140138..2140815	+	225	114799143	-	HNE_2067	-	hypothetical protein
2032	 64.95	0	2140812..2141975	-	387	114800125	-	HNE_2068	-	hypothetical protein
2033	 60.61	0	2142130..2143467	-	445	114797334	tig	HNE_2069	-	trigger factor
2034	 61.37	0	2144027..2145481	+	484	114798555	-	HNE_2070	-	hypothetical protein
2035	 61.15	0	2145478..2145876	+	132	114798772	-	HNE_2071	-	hypothetical protein
2036	 58.78	0	2146064..2147533	+	489	114799530	algI	HNE_2072	-	alginate biosynthesis protein AlgI
2037	 58.56	0	2147496..2148593	+	365	114798963	-	HNE_2073	-	hypothetical protein
2038	 55.69	-1	2148615..2148860	+	81	114799754	acpP2	HNE_2074	-	acyl carrier protein
2039	 62.66	0	2148908..2150155	+	415	114797975	-	HNE_2075	-	AMP-binding domain-containing protein
2040	 60.98	0	2150188..2150925	+	245	114798063	-	HNE_2076	-	short chain dehydrogenase/reductase family oxidoreductase
2041	 61.51	0	2150926..2152224	-	432	114800405	-	HNE_2077	-	hypothetical protein
2042	 59.37	0	2152624..2153130	+	168	114797560	-	HNE_2079	-	acetyltransferase
2043	 65.42	0	2153133..2154575	-	480	114799199	-	HNE_2080	-	carbohydrate kinase family protein
2044	 63.89	0	2154583..2155122	-	179	114799998	-	HNE_2081	-	phosphoglycerate mutase family protein
2045	 60.25	0	2155119..2155928	-	269	114797257	-	HNE_2082	-	hypothetical protein
2046	 55.16	-1	2156180..2156518	+	112	114797943	glnB	HNE_2083	-	nitrogen regulatory protein P-II
2047	 59.54	0	2156598..2158001	+	467	114800384	glnA	HNE_2084	-	glutamine synthetase, type I
2048	 61.15	0	2158088..2159011	+	307	114797373	-	HNE_2085	-	Ser/Thr protein phosphatase family protein
2049	 60.02	0	2159071..2160333	-	420	114799276	clpX	HNE_2086	-	ATP-dependent protease ATP-binding subunit
2050	 56.25	-1	2160460..2161083	-	207	114800297	clpP	HNE_2087	-	ATP-dependent Clp protease, proteolytic subunit ClpP
2051	 62.86	0	2161202..2162095	-	297	114799820	-	HNE_2088	-	hypothetical protein
62.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.