IslandPathversion 1.0

IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.10 STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
143	 61.93	0	126950..128047	+	365	114798450	-	HNE_0143	-	Rieske 2Fe-2S family protein
144	 61.20	0	128185..128769	+	194	114797636	-	HNE_0144	-	fasciclin domain-containing protein
145	 67.26	+1	128909..129412	+	167	114799962	ruvC	HNE_0145	-	crossover junction endodeoxyribonuclease RuvC
146	 65.38	0	129409..130032	+	207	114798884	ruvA	HNE_0146	-	Holliday junction DNA helicase RuvA
147	 66.47	+1	130029..131063	+	344	114800414	ruvB	HNE_0147	-	Holliday junction DNA helicase B
148	 68.42	+1	131064..131462	-	132	114799614	-	HNE_0148	-	hypothetical protein
149	 62.83	0	131539..132684	+	381	114797615	-	HNE_0149	-	hypothetical protein
150	 58.99	0	132681..133136	+	151	114797377	-	HNE_0150	-	thioesterase family protein
151	 62.73	0	133454..134164	+	236	114799599	tolQ	HNE_0151	-	protein TolQ
152	 62.89	0	134177..134626	+	149	114799773	-	HNE_0152	-	ExbD/TolR family transport energizing protein
153	 62.66	0	134652..135575	+	307	114798960	-	HNE_0153	-	hypothetical protein
154	 63.05	0	135616..136971	+	451	114798605	tolB	HNE_0154	-	tolB protein
155	 61.88	0	137204..137746	+	180	114797840	-	HNE_0155	-	ompA family protein
156	 66.25	+1	137861..138817	+	318	114800143	-	HNE_0156	-	hypothetical protein
157	 65.49	0	138805..139908	+	367	114799417	tilS	HNE_0157	-	tRNA(Ile)-lysidine synthetase
158	 61.25	0	139957..141876	+	639	114797326	ftsH	HNE_0158	-	ATP-dependent metalloprotease FtsH
159	 61.80	0	141950..142606	+	218	114800066	-	HNE_0159	-	hypothetical protein
160	 61.21	0	142647..142976	+	109	114797110	-	HNE_0160	-	hypothetical protein
161	 59.82	0	143079..143837	+	252	114799876	-	HNE_0161	-	hypothetical protein
162	 60.54	0	143838..145013	-	391	114798254	-	HNE_0162	-	L-carnitine dehydratase
163	 63.17	0	145081..146508	-	475	114797399	-	HNE_0163	-	hypothetical protein
164	 57.60	-1	146696..149584	+	962	114799790	-	HNE_0164	-	TonB-dependent receptor
165	 59.34	0	149724..152084	-	786	114798938	-	HNE_0165	-	tonB dependent receptor
166	 59.35	0	152262..153218	-	318	114798639	-	HNE_0166	-	GDXG family lipase
167	 59.76	0	153300..155153	-	617	114797895	fcs1	HNE_0167	-	acyl-CoA synthetase
168	 59.93	0	155246..156595	-	449	114800209	glmM	HNE_0168	-	phosphoglucosamine mutase
169	 61.34	0	156619..157407	-	262	114799459	cysQ	HNE_0169	-	3'(2'),5'-bisphosphate nucleotidase
170	 57.30	-1	157423..158319	-	298	114797197	-	HNE_0170	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
171	 60.80	0	158401..159627	-	408	114797934	ilvA	HNE_0171	-	threonine dehydratase
172	 59.88	0	159673..161544	-	623	114797610	-	HNE_0172	-	peptide ABC transporter, ATP-binding protein
173	 58.44	0	161673..162353	-	226	114800389	-	HNE_0173	-	putative outer membrane protein OmpW
174	 60.14	0	162628..163761	+	377	114798252	gbd	HNE_0174	-	4-hydroxybutyrate dehydrogenase, NAD-dependent
175	 57.19	-1	163771..164445	+	224	114797489	-	HNE_0175	-	hypothetical protein
176	 57.98	-1	164452..165510	-	352	114799802	-	HNE_0176	-	3-phytase
177	 60.64	0	165592..166470	-	292	114798930	-	HNE_0177	-	CHAD domain-containing protein
178	 58.39	-1	166626..167048	+	140	114798757	-	HNE_0178	-	hypothetical protein
179	 59.64	0	167045..167428	-	127	114797635	-	HNE_0179	-	hypothetical protein
180	 59.58	0	167642..168940	+	432	114800245	phaZ	HNE_0180	-	polyhydroxyalkanoate depolymerase, intracellular
181	 60.80	0	168947..170020	-	357	114798354	-	HNE_0181	-	cysteine synthase/cystathionine beta-synthase family protein
182	 53.33	-2	170081..170575	+	164	114798689	-	HNE_0182	-	AsnC family transcriptional regulator
183	 61.50	0	170572..171423	-	283	114797420	-	HNE_0183	-	hypothetical protein
184	 62.47	0	171493..172302	-	269	114800197	-	HNE_0184	-	zinc/iron ABC transporter permease
185	 60.16	0	172494..173138	+	214	114798529	-	HNE_0185	-	putative lipoprotein
186	 64.22	0	173147..173842	+	231	114797981	-	HNE_0186	-	ABC transporter, ATP-binding protein
187	 62.10	0	173839..175107	+	422	114800526	-	HNE_0187	-	ABC transporter, permease protein
188	 61.29	0	175156..175881	+	241	114797268	-	HNE_0188	-	putative lipoprotein
189	 57.86	-1	175881..176516	+	211	114798003	-	HNE_0189	-	HAD family hydrolase
190	 57.97	-1	176661..177074	-	137	114798146	mscL	HNE_0190	-	large conductance mechanosensitive channel protein
191	 63.00	0	177183..177482	-	99	114798899	ihfB	HNE_0191	-	integration host factor, beta subunit
192	 61.26	0	177598..179577	-	659	114797862	rpsA	HNE_0192	-	30S ribosomal protein S1
193	 62.91	0	179719..180357	-	212	114798672	cmk	HNE_0193	-	cytidylate kinase
194	 63.74	0	180418..181509	-	363	114799497	-	HNE_0194	-	NADH:flavin oxidoreductase/NADH oxidase family protein
195	 65.91	+1	181563..182882	-	439	114800272	aroA	HNE_0195	-	3-phosphoshikimate 1-carboxyvinyltransferase
196	 55.49	-1	183012..183530	+	172	114798197	-	HNE_0196	-	hypothetical protein
197	 59.17	0	184001..184240	+	79	114800391	-	HNE_0198	-	hypothetical protein
198	 61.70	0	184343..185590	+	415	114799624	-	HNE_0199	-	putative lipoprotein
199	 63.77	0	185603..186637	+	344	114799280	-	HNE_0200	-	putative lipoprotein
200	 65.81	+1	186634..187098	+	154	114798243	-	HNE_0201	-	YaiI/YqxD family protein
201	 61.95	0	187145..187759	+	204	114797270	-	HNE_0202	-	putative exonuclease
202	 62.54	0	187861..188538	+	225	114799884	-	HNE_0203	-	hypothetical protein
203	 65.18	0	188525..189061	+	178	114798835	-	HNE_0204	-	OstA family protein
204	 60.54	0	189155..189889	+	244	114797827	-	HNE_0205	-	ABC transporter, ATP-binding protein
205	 63.53	0	189908..191407	+	499	114800351	rpoN	HNE_0206	-	RNA polymerase factor sigma-54
206	 68.09	+1	192246..193088	-	280	114799341	rbsK	HNE_0207	-	ribokinase
207	 66.67	+1	193085..194017	-	310	114798081	-	HNE_0208	-	inosine-uridine preferring nucleoside hydrolase family protein
208	 62.29	0	194014..194538	-	174	114797114	-	HNE_0209	-	hypothetical protein
209	 54.90	-1	194479..194580	+	33	114798703	-	HNE_0210	-	hypothetical protein
210	 63.47	0	194675..197803	-	1042	114797729	-	HNE_0211	-	AcrB/AcrD/AcrF family protein
211	 65.53	0	197808..198953	-	381	114797281	-	HNE_0212	-	RND family efflux transporter MFP subunit
212	 67.78	+1	198963..200402	-	479	114799824	-	HNE_0213	-	RND efflux system outer membrane lipoprotein
213	 64.02	0	200728..202539	+	603	114799296	-	HNE_0214	-	potassium/proton antiporter
214	 58.82	0	202748..205615	+	955	114800314	-	HNE_0215	-	TonB-dependent receptor
215	 59.12	0	205566..206969	+	467	114800334	-	HNE_0216	-	Ser/Thr protein phosphatase family protein
216	 64.07	0	207039..207809	-	256	114799303	-	HNE_0217	-	NAD-dependent epimerase/dehydratase family protein
217	 59.69	0	208103..208618	+	171	114797785	-	HNE_0218	-	ECF subfamily RNA polymerase sigma factor
218	 61.93	0	208653..209687	+	344	114800332	-	HNE_0219	-	sigma factor regulatory protein FecR/PupR family
219	 60.75	0	209986..212790	+	934	114799872	-	HNE_0220	-	outer membrane receptor (OMR) family protein
220	 59.35	0	212878..215022	+	714	114797105	-	HNE_0221	-	penicillin amidase
221	 59.09	0	215044..216600	+	518	114798541	-	HNE_0222	-	FG-GAP repeat-containing protein
222	 57.80	-1	216654..217025	-	123	114799501	-	HNE_0223	-	putative lipoprotein
223	 64.05	0	217294..218400	+	368	114797391	-	HNE_0225	-	GumN family protein
224	 66.54	+1	218407..219219	-	270	114797506	-	HNE_0226	-	inositol monophosphatase family protein
225	 63.16	0	219252..219650	-	132	114798925	-	HNE_0227	-	DNA-binding protein
226	 61.58	0	219923..220747	-	274	114799855	-	HNE_0228	-	putative N-formylglutamate amidohydrolase
227	 60.56	0	220976..221335	+	119	114797706	-	HNE_0229	-	response regulator
228	 63.99	0	221337..222569	-	410	114797940	-	HNE_0230	-	amine oxidase, flavin-containing
229	 63.62	0	222656..223147	+	163	114798072	-	HNE_0231	-	rrf2 family protein
230	 61.55	0	223445..224167	+	240	114797106	-	HNE_0233	-	hypothetical protein
231	 60.25	0	224341..225540	+	399	114800539	-	HNE_0234	-	hypothetical protein
232	 63.30	0	225537..226487	+	316	114799545	-	HNE_0235	-	hypothetical protein
233	 64.62	0	226492..228057	+	521	114797779	-	HNE_0236	-	hypothetical protein
234	 62.33	0	228064..229284	-	406	114800356	-	HNE_0237	-	acyl-CoA dehydrogenase family protein
235	 62.77	0	229281..230204	-	307	114800069	-	HNE_0238	-	hypothetical protein
236	 58.65	0	230349..230972	-	207	114799076	-	HNE_0239	-	hypothetical protein
237	 59.30	0	230991..231479	-	162	114798928	-	HNE_0240	-	hypothetical protein
238	 59.69	0	231484..231999	-	171	114797942	fliL	HNE_0241	-	flagellar basal body-associated protein FliL
239	 62.19	0	232128..233714	+	528	114800445	fliF	HNE_0242	-	flagellar MS-ring protein
240	 63.07	0	233707..234318	+	203	114797896	-	HNE_0243	-	hypothetical protein
241	 54.33	-2	234339..234638	+	99	114798836	-	HNE_0244	-	putative flagellar motor switch protein FliN
242	 57.97	-1	234635..235393	+	252	114798811	fliP	HNE_0245	-	flagellar biosynthesis protein FliP
62.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.