IslandPathversion 1.0

IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.10 STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1806	 61.49	0	1898089..1898976	-	295	114797210	ispA	HNE_1839	-	geranyltranstransferase
1807	 60.16	0	1899008..1899253	-	81	114800150	xseB	HNE_1840	-	exodeoxyribonuclease VII, small subunit
1808	 64.84	0	1899325..1899927	-	200	114800175	-	HNE_1841	-	phosphoglycerate mutase family protein
1809	 61.00	0	1900020..1900796	-	258	114798259	lepB	HNE_1842	-	signal peptidase I
1810	 61.13	0	1900977..1902041	-	354	114799081	-	HNE_1843	-	metallo-beta-lactamase family protein
1811	 63.63	0	1902097..1903215	-	372	114799825	-	HNE_1844	-	ribosomal large subunit pseudouridine synthase F
1812	 64.86	0	1903285..1905054	-	589	114797077	-	HNE_1845	-	acyl-CoA dehydrogenase family protein
1813	 61.67	0	1905176..1905916	+	246	114798699	-	HNE_1846	-	YceI-like family protein
1814	 59.64	0	1905923..1907131	+	402	114799485	-	HNE_1847	-	nickel-dependent hydrogenase, b-type cytochrome subunit/YceI-like family protein
1815	 64.23	0	1907192..1908133	+	313	114798799	-	HNE_1848	-	Sua5/YciO/YrdC/YwlC family protein
1816	 53.52	-2	1908144..1908356	-	70	114799391	-	HNE_1849	-	hypothetical protein
1817	 62.59	0	1908449..1909258	-	269	114797254	cysE	HNE_1850	-	serine O-acetyltransferase
1818	 62.29	0	1909331..1912459	-	1042	114800359	-	HNE_1851	-	RND efflux transporter
1819	 63.50	0	1912478..1913707	-	409	114799352	-	HNE_1852	-	RND family efflux transporter MFP subunit
1820	 58.97	0	1913662..1914363	-	233	114797418	-	HNE_1853	-	TetR family transcriptional regulator
1821	 64.95	0	1914504..1915142	+	212	114799931	-	HNE_1854	-	nitroreductase family protein
1822	 56.41	-1	1915189..1915656	-	155	114798966	folE1	HNE_1855	-	7-cyano-7-deazaguanine reductase
1823	 58.04	-1	1915649..1916668	-	339	114798621	-	HNE_1856	-	K+-dependent Na+/Ca+ exchanger related-protein
1824	 60.35	0	1916843..1918663	+	606	114798975	-	HNE_1857	-	OMP85 family outer membrane protein
1825	 60.03	0	1918663..1922778	+	1371	114798184	-	HNE_1858	-	hypothetical protein
1826	 57.81	-1	1922957..1923340	+	127	114797386	-	HNE_1859	-	DNA-binding protein
1827	 59.25	0	1923414..1924235	-	273	114798008	-	HNE_1860	-	SCP-like extracellular family protein
1828	 55.63	-1	1924314..1925210	+	298	114799222	-	HNE_1861	-	2OG-Fe(II) oxygenase family oxidoreductase
1829	 61.76	0	1925397..1926944	+	515	114799982	-	HNE_1862	-	putative lipoprotein
1830	 57.88	-1	1927024..1929675	+	883	114799622	-	HNE_1863	-	TonB-dependent receptor
1831	 61.30	0	1929913..1930788	+	291	114800404	gspC	HNE_1864	-	general secretion pathway protein C
1832	 60.19	0	1930785..1932746	+	653	114797223	gspD	HNE_1865	-	general secretion pathway protein D
1833	 61.03	0	1932754..1934244	+	496	114798020	gspE	HNE_1866	-	general secretory pathway protein E
1834	 63.78	0	1934231..1935442	+	403	114798264	gspF	HNE_1867	-	general secretion pathway protein F
1835	 62.31	0	1935455..1935913	+	152	114799042	gspG1	HNE_1868	-	general secretion pathway protein G
1836	 58.97	0	1935922..1936428	+	168	114797639	gspH	HNE_1869	-	general secretion pathway protein H
1837	 58.13	-1	1936428..1936802	+	124	114797577	gspI	HNE_1870	-	general secretion pathway protein I
1838	 59.58	0	1936799..1937419	+	206	114799191	gspJ	HNE_1871	-	general secretion pathway protein J
1839	 61.01	0	1937416..1938387	+	323	114798322	gspK	HNE_1872	-	general secretion pathway protein K
1840	 57.52	-1	1938387..1939490	+	367	114800477	gspL	HNE_1873	-	general secretion pathway protein L
1841	 58.74	0	1939487..1939978	+	163	114799513	gspM	HNE_1874	-	general secretion pathway protein M
1842	 57.94	-1	1939978..1940733	+	251	114798558	gspN	HNE_1875	-	general secretion pathway protein N
1843	 59.30	0	1940730..1941218	+	162	114797558	-	HNE_1876	-	hypothetical protein
1844	 58.91	0	1941247..1941594	-	115	114800058	-	HNE_1877	-	DNA-binding protein
1845	 59.55	0	1941686..1943062	-	458	114798834	sdaA	HNE_1878	-	L-serine ammonia-lyase
1846	 64.14	0	1943135..1944322	-	395	114799387	-	HNE_1879	-	monooxygenase
1847	 55.39	-1	1944356..1944559	-	67	114800346	-	HNE_1880	-	hypothetical protein
1848	 58.07	-1	1944678..1945619	+	313	114797217	-	HNE_1881	-	ABC transporter, ATP-binding protein
1849	 56.70	-1	1945641..1945961	-	106	114798336	trx	HNE_1882	-	thioredoxin
1850	 64.21	0	1946026..1949532	-	1168	114799862	addA	HNE_1883	-	double-strand break repair helicase AddA
1851	 65.19	0	1949525..1952578	-	1017	114800509	-	HNE_1884	-	hypothetical protein
1852	 65.70	0	1952568..1953293	-	241	114797511	-	HNE_1885	-	nucleotidyl transferase family protein
1853	 62.85	0	1953290..1954390	-	366	114798471	-	HNE_1886	-	hypothetical protein
1854	 59.21	0	1954374..1954829	-	151	114798401	-	HNE_1887	-	hypothetical protein
1855	 61.93	0	1954986..1956230	+	414	114799596	-	HNE_1888	-	pyridine nucleotide-disulfide oxidoreductase
1856	 57.94	-1	1956248..1956568	+	106	114800377	fdxB	HNE_1889	-	ferredoxin, 2Fe-2S
1857	 60.94	0	1956703..1957488	+	261	114798894	-	HNE_1890	-	hypothetical protein
1858	 58.58	0	1957560..1957967	-	135	114798087	atpC	HNE_1891	-	ATP synthase F1, epsilon subunit
1859	 60.01	0	1957979..1959406	-	475	114800518	atpD	HNE_1892	-	F0F1 ATP synthase subunit beta
1860	 59.73	0	1959453..1960331	-	292	114800497	atpG	HNE_1893	-	ATP synthase F1, gamma subunit
1861	 59.38	0	1960367..1961902	-	511	114799519	atpA	HNE_1894	-	ATP synthase F1, alpha subunit
1862	 57.88	-1	1961911..1962456	-	181	114798041	atpH	HNE_1895	-	ATP synthase F1, delta subunit
1863	 65.26	0	1962664..1964862	-	732	114797126	priA	HNE_1896	-	primosome assembly protein PriA
1864	 65.46	0	1964922..1965500	-	192	114800225	-	HNE_1897	-	TetR family transcriptional regulator
1865	 62.38	0	1965589..1966008	+	139	114799649	-	HNE_1898	-	thioesterase family protein
1866	 60.02	0	1966085..1967077	+	330	114798057	-	HNE_1899	-	AAA family ATPase
1867	 62.33	0	1967090..1968451	+	453	114798981	-	HNE_1900	-	VWA domain-containing protein
1868	 61.31	0	1968462..1969544	-	360	114798609	ccrM	HNE_1901	-	modification methylase CcrM
1869	 63.42	0	1969737..1971368	+	543	114797816	-	HNE_1902	-	Na/Pi cotransporter family protein
1870	 62.01	0	1971365..1972438	-	357	114798617	-	HNE_1903	-	radical SAM domain-containing protein
1871	 65.37	0	1972547..1973164	-	205	114797555	-	HNE_1904	-	hypothetical protein
1872	 60.84	0	1973272..1973769	+	165	114800292	-	HNE_1905	-	hypothetical protein
1873	 65.94	+1	1973766..1974449	-	227	114799335	-	HNE_1906	-	glycosyl transferase, group 2 family protein
1874	 54.30	-2	1974535..1975011	+	158	114799154	-	HNE_1907	-	hypothetical protein
1875	 65.32	0	1975012..1975752	-	246	114798144	-	HNE_1908	-	uracil-DNA glycosylase
1876	 61.73	0	1975898..1977577	+	559	114797800	-	HNE_1909	-	putative electron transfer flavoprotein-ubiquinone oxidoreductase
1877	 61.96	0	1977715..1979649	+	644	114799202	-	HNE_1910	-	putative lipoprotein
1878	 63.79	0	1979762..1982368	+	868	114797913	mrcA	HNE_1911	-	penicillin-binding protein 1A
1879	 61.19	0	1982462..1983569	+	368	114798643	prfB	HNE_1912	-	peptide chain release factor 2, programmed frameshift
1880	 60.31	0	1983566..1984210	+	214	114798604	-	HNE_1913	-	cold shock DNA-binding membrane protein
1881	 65.13	0	1984197..1985240	-	347	114799676	mutY	HNE_1914	-	A/G-specific adenine glycosylase
1882	 65.55	0	1985286..1985822	+	178	114799887	-	HNE_1915	-	hypothetical protein
1883	 61.46	0	1985893..1986564	+	223	114798923	-	HNE_1916	-	DSBA-like thioredoxin domain-containing protein
1884	 69.27	+1	1986580..1990041	+	1153	114799181	smc	HNE_1917	-	chromosome segregation protein SMC
1885	 59.50	0	1990191..1990553	+	120	114798123	-	HNE_1918	-	putative ATP synthase, subunit I
1886	 60.37	0	1990559..1991320	+	253	114797617	atpB	HNE_1919	-	F0F1 ATP synthase subunit A
1887	 59.92	0	1991437..1991673	+	78	114798825	atpE	HNE_1920	-	ATP synthase F0, C subunit
1888	 61.67	0	1991719..1992258	+	179	114798353	-	HNE_1921	-	ATP synthase F0, B subunit family protein
1889	 67.19	+1	1992258..1992827	+	189	114798056	-	HNE_1922	-	ATP synthase F0, B subunit family protein
1890	 60.55	0	1992958..1993872	-	304	114797116	-	HNE_1923	-	hypothetical protein
1891	 60.93	0	1994021..1995118	+	365	114799588	-	HNE_1924	-	translation-associated GTPase
1892	 58.59	0	1995200..1996189	-	329	114798600	secF	HNE_1925	-	protein-export membrane protein SecF
1893	 60.88	0	1996208..1997815	-	535	114798563	secD1	HNE_1926	-	protein-export membrane protein SecD
1894	 61.33	0	1997852..1998226	-	124	114797763	yajC	HNE_1927	-	preprotein translocase, YajC subunit
1895	 66.06	+1	1998332..1998991	-	219	114800134	pcm	HNE_1928	-	protein-L-isoaspartate(D-aspartate) O-methyltransferase
1896	 62.47	0	1998979..1999740	-	253	114799382	surE	HNE_1929	-	stationary phase survival protein SurE
1897	 61.74	0	1999780..2001078	-	432	114800440	serS	HNE_1930	-	seryl-tRNA synthetase
1898	 61.26	0	2001470..2001580	+	36	114797679	-	HNE_1931	-	hypothetical protein
1899	 58.21	-1	2002420..2003247	-	275	114798916	tatC	HNE_1932	-	Sec-independent protein translocase TatC
1900	 63.12	0	2003244..2003666	-	140	114799670	tatA1	HNE_1933	-	twin-arginine translocation protein TatA
1901	 57.75	-1	2003692..2003904	-	70	114797323	tatA2	HNE_1934	-	twin arginine-targeting protein translocase
1902	 60.23	0	2003988..2004764	+	258	114798068	xth	HNE_1935	-	exodeoxyribonuclease III
1903	 56.43	-1	2004790..2005131	+	113	114799389	-	HNE_1936	-	hypothetical protein
1904	 63.08	0	2005489..2006157	+	222	114800222	purQ	HNE_1937	-	phosphoribosylformylglycinamidine synthase I
1905	 58.97	0	2006154..2007167	+	337	114797828	add	HNE_1938	-	adenosine deaminase
62.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.