IslandPathversion 1.0

IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.10 STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1727	 56.09	-1	1798362..1799864	+	500	114797733	nuoM	HNE_1757	-	NADH-quinone oxidoreductase, M subunit
1728	 55.16	-1	1799869..1801302	+	477	114800320	nuoN	HNE_1758	-	NADH-quinone oxidoreductase, N subunit
1729	 56.51	-1	1801266..1802033	+	255	114798329	-	HNE_1759	-	biotin--acetyl-CoA-carboxylase ligase
1730	 54.04	-2	1802037..1802804	+	255	114799332	-	HNE_1760	-	pantothenate kinase
1731	 55.42	-1	1802801..1804498	+	565	114800376	-	HNE_1761	-	metallo-beta-lactamase family protein
1732	 54.55	-2	1804506..1804934	+	142	114797534	-	HNE_1762	-	methylmalonyl-CoA epimerase
1733	 55.00	-1	1804934..1805173	+	79	114800295	-	HNE_1763	-	hypothetical protein
1734	 56.36	-1	1805221..1806540	+	439	114799658	proS	HNE_1764	-	prolyl-tRNA synthetase
1735	 56.13	-1	1806549..1807820	+	423	114798078	-	HNE_1765	-	LolC/E family lipoprotein releasing system, transmembrane protein
1736	 57.50	-1	1807817..1808503	+	228	114797117	-	HNE_1766	-	lipoprotein releasing system, ATP-binding protein,-like protein
1737	 55.45	-1	1808583..1812005	+	1140	114800101	dnaE	HNE_1767	-	DNA polymerase III, alpha subunit
1738	 58.21	-1	1812145..1812936	+	263	114799137	rpsB	HNE_1768	-	ribosomal protein S2
1739	 55.85	-1	1812975..1813880	+	301	114799266	tsf	HNE_1769	-	translation elongation factor Ts
1740	 54.50	-2	1813991..1814746	+	251	114798646	pyrH	HNE_1770	-	uridylate kinase
1741	 55.32	-1	1814743..1815297	+	184	114797846	frr	HNE_1771	-	ribosome recycling factor
1742	 54.41	-2	1815297..1816055	+	252	114798355	uppS	HNE_1772	-	undecaprenyl diphosphate synthase
1743	 56.04	-1	1816055..1816873	+	272	114798911	cdsA	HNE_1773	-	phosphatidate cytidylyltransferase
1744	 55.36	-1	1816880..1818073	+	397	114799124	dxr	HNE_1774	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1745	 54.38	-2	1818078..1819241	+	387	114800133	-	HNE_1775	-	M50 family peptidase
1746	 53.68	-2	1819278..1821842	+	854	114797815	-	HNE_1776	-	OMP85 family outer membrane protein
1747	 52.76	-2	1821875..1822471	+	198	114798539	-	HNE_1777	-	OmpH family outer membrane protein
1748	 58.21	-1	1822484..1823500	+	338	114798725	lpxD	HNE_1778	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1749	 55.85	-1	1823540..1824334	+	264	114799420	lpxA	HNE_1779	-	acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase
1750	 59.48	0	1824336..1825184	+	282	114797181	-	HNE_1780	-	hypothetical protein
1751	 56.18	-1	1825181..1826353	+	390	114800386	lpxB	HNE_1781	-	lipid-A-disaccharide synthase
1752	 57.70	-1	1826343..1827647	-	434	114797964	gltA	HNE_1782	-	citrate synthase I
1753	 58.93	0	1827695..1829155	-	486	114798943	gltX1	HNE_1783	-	glutamyl-tRNA synthetase
1754	 59.47	0	1829459..1829722	-	87	114798535	-	HNE_1784	-	hypothetical protein
1755	 56.50	-1	1829709..1830485	+	258	114799405	-	HNE_1785	-	hypothetical protein
1756	 57.02	-1	1830466..1831149	-	227	114797550	lexA	HNE_1786	-	LexA repressor
1757	 57.64	-1	1831216..1832013	-	265	114800153	trpC	HNE_1787	-	indole-3-glycerol phosphate synthase
1758	 60.72	0	1832016..1833041	-	341	114797113	trpD	HNE_1788	-	anthranilate phosphoribosyltransferase
1759	 55.50	-1	1833038..1833610	-	190	114798771	trpG	HNE_1789	-	anthranilate synthase component II
1760	 58.39	-1	1833607..1835031	-	474	114799062	trpE	HNE_1790	-	anthranilate synthase component I
1761	 59.51	0	1835028..1836941	-	637	114799881	-	HNE_1791	-	peptidylprolyl cis-trans isomerase,-like protein
1762	 59.60	0	1837029..1837778	+	249	114799671	tpiA	HNE_1792	-	triosephosphate isomerase
1763	 59.43	0	1837859..1838314	+	151	114799731	secG	HNE_1793	-	preprotein translocase, SecG subunit
1764	 59.33	0	1838378..1840012	+	544	114800487	pyrG	HNE_1794	-	CTP synthetase
1765	 54.15	-2	1840035..1841264	-	409	114799922	-	HNE_1795	-	putative cyclopropane-fatty-acyl-phospholipid synthase
1766	 55.68	-1	1841261..1842070	-	269	114799149	-	HNE_1796	-	hypothetical protein
1767	 55.58	-1	1842067..1843383	-	438	114798865	-	HNE_1797	-	hypothetical protein
1768	 58.85	0	1843380..1844837	-	485	114797406	-	HNE_1798	-	deoxyribodipyrimidine photolyase family protein
1769	 60.37	0	1844994..1846454	+	486	114800169	rfaE	HNE_1799	-	rfaE bifunctional protein
1770	 52.98	-2	1846495..1846947	-	150	114798382	-	HNE_1800	-	hemimethylated DNA binding domain-containing protein
1771	 63.20	0	1847038..1848105	+	355	114799621	-	HNE_1801	-	Ppx/GppA family phosphatase
1772	 60.85	0	1848098..1848802	+	234	114798748	-	HNE_1802	-	putative ribosomal RNA large subunit methyltransferase J
1773	 60.10	0	1848827..1849237	+	136	114797683	-	HNE_1803	-	hypothetical protein
1774	 63.10	0	1849300..1850757	+	485	114800464	guaB	HNE_1804	-	inosine-5'-monophosphate dehydrogenase
1775	 59.86	0	1850759..1851346	-	195	114799632	-	HNE_1805	-	acetyltransferase
1776	 61.47	0	1851448..1852755	+	435	114798023	-	HNE_1806	-	NOL1/NOP2/sun domain-containing protein
1777	 59.24	0	1852759..1853835	-	358	114797193	-	HNE_1807	-	beta-hydroxylase
1778	 59.65	0	1853924..1855504	+	526	114797176	guaA	HNE_1808	-	bifunctional GMP synthase/glutamine amidotransferase protein
1779	 61.23	0	1855670..1856755	+	361	114800128	-	HNE_1809	-	flavin reductase family protein
1780	 57.84	-1	1857062..1857865	-	267	114798446	-	HNE_1810	-	metallo-beta-lactamase family protein
1781	 57.01	-1	1857862..1858638	-	258	114798238	-	HNE_1811	-	TatD family hydrolase
1782	 65.38	0	1858649..1859584	-	311	114798506	-	HNE_1812	-	putative DNA polymerase III, delta prime subunit
1783	 63.94	0	1859581..1860240	-	219	114799318	tmk	HNE_1813	-	thymidylate kinase
1784	 60.07	0	1860233..1861369	-	378	114799690	-	HNE_1814	-	D-alanyl-D-alanine carboxypeptidase
1785	 63.99	0	1861505..1862737	-	410	114797813	rlpA	HNE_1815	-	rare lipoprotein A
1786	 62.13	0	1863652..1864224	+	190	114799320	-	HNE_1817	-	phosphoglycerate mutase family protein
1787	 64.85	0	1864443..1865981	+	512	114797459	-	HNE_1818	-	2-nitropropane dioxygenase family oxidoreductase
1788	 66.95	+1	1871324..1877404	+	2026	114799051	-	HNE_1820	-	putative polyketide synthase
1789	 63.32	0	1878223..1879359	+	378	114799688	-	HNE_1821	-	OmpA family protein
1790	 62.26	0	1879403..1881148	+	581	114797145	-	HNE_1822	-	hypothetical protein
1791	 62.83	0	1881247..1882446	+	399	114798240	fidA	HNE_1823	-	E-cinnamoyl-CoA:R-phenyllactate CoA transferase, large subunit
1792	 61.15	0	1882510..1883307	-	265	114800390	-	HNE_1824	-	enoyl-CoA hydratase
1793	 60.55	0	1883334..1884134	-	266	114799178	-	HNE_1825	-	hypothetical protein
1794	 59.71	0	1884138..1885028	-	296	114798417	mmsB	HNE_1826	-	3-hydroxyisobutyrate dehydrogenase
1795	 57.27	-1	1885030..1885806	-	258	114797149	-	HNE_1827	-	enoyl-CoA hydratase
1796	 60.72	0	1885813..1887309	-	498	114799926	mmsA1	HNE_1828	-	methylmalonate-semialdehyde dehydrogenase
1797	 61.10	0	1887693..1888877	+	394	114800488	-	HNE_1830	-	hypothetical protein
1798	 59.08	0	1888945..1890684	+	579	114798101	metG	HNE_1831	-	methionyl-tRNA synthetase
1799	 60.04	0	1890689..1891171	+	160	114797573	-	HNE_1832	-	hypothetical protein
1800	 63.17	0	1891168..1891824	-	218	114800107	-	HNE_1833	-	hypothetical protein
1801	 60.95	0	1891814..1892827	-	337	114798510	-	HNE_1834	-	aldo/keto reductase family oxidoreductase
1802	 61.07	0	1892838..1894589	-	583	114797684	fcs3	HNE_1835	-	feruloyl-CoA synthetase
1803	 54.98	-1	1894768..1895349	-	193	114797068	-	HNE_1836	-	hypothetical protein
1804	 60.75	0	1895384..1896025	-	213	114799586	-	HNE_1837	-	putative lipoprotein
1805	 62.04	0	1896131..1898053	-	640	114798103	dxs	HNE_1838	-	1-deoxy-D-xylulose-5-phosphate synthase
1806	 61.49	0	1898089..1898976	-	295	114797210	ispA	HNE_1839	-	geranyltranstransferase
1807	 60.16	0	1899008..1899253	-	81	114800150	xseB	HNE_1840	-	exodeoxyribonuclease VII, small subunit
1808	 64.84	0	1899325..1899927	-	200	114800175	-	HNE_1841	-	phosphoglycerate mutase family protein
1809	 61.00	0	1900020..1900796	-	258	114798259	lepB	HNE_1842	-	signal peptidase I
1810	 61.13	0	1900977..1902041	-	354	114799081	-	HNE_1843	-	metallo-beta-lactamase family protein
1811	 63.63	0	1902097..1903215	-	372	114799825	-	HNE_1844	-	ribosomal large subunit pseudouridine synthase F
1812	 64.86	0	1903285..1905054	-	589	114797077	-	HNE_1845	-	acyl-CoA dehydrogenase family protein
1813	 61.67	0	1905176..1905916	+	246	114798699	-	HNE_1846	-	YceI-like family protein
1814	 59.64	0	1905923..1907131	+	402	114799485	-	HNE_1847	-	nickel-dependent hydrogenase, b-type cytochrome subunit/YceI-like family protein
1815	 64.23	0	1907192..1908133	+	313	114798799	-	HNE_1848	-	Sua5/YciO/YrdC/YwlC family protein
1816	 53.52	-2	1908144..1908356	-	70	114799391	-	HNE_1849	-	hypothetical protein
1817	 62.59	0	1908449..1909258	-	269	114797254	cysE	HNE_1850	-	serine O-acetyltransferase
1818	 62.29	0	1909331..1912459	-	1042	114800359	-	HNE_1851	-	RND efflux transporter
1819	 63.50	0	1912478..1913707	-	409	114799352	-	HNE_1852	-	RND family efflux transporter MFP subunit
1820	 58.97	0	1913662..1914363	-	233	114797418	-	HNE_1853	-	TetR family transcriptional regulator
1821	 64.95	0	1914504..1915142	+	212	114799931	-	HNE_1854	-	nitroreductase family protein
1822	 56.41	-1	1915189..1915656	-	155	114798966	folE1	HNE_1855	-	7-cyano-7-deazaguanine reductase
1823	 58.04	-1	1915649..1916668	-	339	114798621	-	HNE_1856	-	K+-dependent Na+/Ca+ exchanger related-protein
1824	 60.35	0	1916843..1918663	+	606	114798975	-	HNE_1857	-	OMP85 family outer membrane protein
1825	 60.03	0	1918663..1922778	+	1371	114798184	-	HNE_1858	-	hypothetical protein
1826	 57.81	-1	1922957..1923340	+	127	114797386	-	HNE_1859	-	DNA-binding protein
62.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.