IslandPathversion 1.0

IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.10 STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1663	 61.40	0	1731485..1732909	+	474	114799977	merA	HNE_1691	-	mercuric reductase
1664	 63.18	0	1733036..1733494	-	152	114799672	-	HNE_1692	-	hypothetical protein
1665	 62.96	0	1733491..1736700	-	1069	114800435	-	HNE_1693	-	CzcA family heavy metal efflux protein
1666	 63.90	0	1736697..1738505	-	602	114797593	-	HNE_1694	-	RND family efflux transporter MFP subunit
1667	 66.09	+1	1738502..1739719	-	405	114798550	-	HNE_1695	-	outer membrane efflux protein
1668	 57.54	-1	1739783..1740067	-	94	114798940	-	HNE_1696	-	hypothetical protein
1669	 59.72	0	1740074..1740217	+	47	114799808	-	HNE_1697	-	hypothetical protein
1670	 51.85	-2	1740863..1741699	+	278	114797482	-	HNE_1698	-	sigma-70 region 2
1671	 56.92	-1	1741696..1742331	+	211	114798155	-	HNE_1699	-	hypothetical protein
1672	 62.28	0	1742747..1745137	-	796	114798511	-	HNE_1700	-	copper-translocating P-type ATPase
1673	 58.36	-1	1745237..1746091	-	284	114799255	-	HNE_1701	-	hypothetical protein
1674	 63.41	0	1746176..1746913	-	245	114799885	-	HNE_1702	-	AraC family transcriptional regulator
1675	 57.50	-1	1746913..1747392	-	159	114798710	-	HNE_1703	-	hypothetical protein
1676	 64.62	0	1747403..1748233	-	276	114798187	copD	HNE_1704	-	copper resistance protein D
1677	 57.06	-1	1748245..1748598	-	117	114797680	copC	HNE_1705	-	copper resistance protein CopC
1678	 58.24	-1	1748640..1749422	-	260	114799827	-	HNE_1706	-	copper resistance protein B
1679	 61.81	0	1749437..1751290	-	617	114799240	-	HNE_1707	-	CopA family copper resistance protein
1680	 62.18	0	1751359..1751937	-	192	114798993	-	HNE_1708	-	putative copper resistance protein
1681	 55.80	-1	1752531..1752806	+	91	114799728	-	HNE_1709	-	hypothetical protein
1682	 56.45	-1	1752845..1753030	-	61	114797824	-	HNE_1710	-	hypothetical protein
1683	 58.46	0	1753123..1753317	+	64	114798627	-	HNE_1711	-	hypothetical protein
1684	 51.85	-2	1753481..1753588	-	35	114798289	-	HNE_1712	-	hypothetical protein
1685	 62.90	0	1753588..1755579	-	663	114799122	cadA	HNE_1713	-	cadmium-translocating P-type ATPase
1686	 61.72	0	1755655..1758768	-	1037	114799378	-	HNE_1714	-	CzcA family heavy metal efflux protein
1687	 62.84	0	1758795..1760099	-	434	114800179	-	HNE_1715	-	RND family efflux transporter MFP subunit
1688	 67.13	+1	1760096..1761391	-	431	114798625	-	HNE_1716	-	efflux transporter, outer membrane factor
1689	 58.48	0	1761469..1761993	-	174	114797850	-	HNE_1717	-	hypothetical protein
1690	 55.91	-1	1762406..1762591	-	61	114799241	-	HNE_1718	-	prophage CP4-57 regulatory protein AlpA family protein
1691	 58.50	0	1762696..1763001	-	101	114797995	-	HNE_1719	-	hypothetical protein
1692	 69.88	+2	1763238..1764482	-	414	114797320	-	HNE_1720	-	type IV secretion system protein TrbI family protein
1693	 66.56	+1	1764487..1765446	-	319	114799000	-	HNE_1721	-	type IV secretion system protein TrbG family protein
1694	 54.17	-2	1765486..1766685	+	399	114799573	-	HNE_1722	-	malate dehydrogenase domain-containing protein
1695	 56.28	-1	1766682..1767047	+	121	114800185	-	HNE_1723	-	hypothetical protein
1696	 56.18	-1	1767050..1767850	+	266	114799397	-	HNE_1724	-	hypothetical protein
1697	 54.34	-2	1768669..1769844	+	391	114797436	-	HNE_1725	-	putative helicase
1698	 59.82	0	1769754..1770410	-	218	114798193	-	HNE_1726	-	MerR family transcriptional regulator
1699	 60.77	0	1770472..1771098	+	208	114799140	-	HNE_1727	-	cation efflux family protein
1700	 58.06	-1	1771095..1771559	+	154	114797959	lspA2	HNE_1728	-	signal peptidase II
1701	 60.92	0	1771923..1773140	-	405	114797188	-	HNE_1729	-	phage integrase family site specific recombinase
1702	 65.77	0	1773446..1773667	-	73	114799923	-	HNE_1731	-	hypothetical protein
1703	 68.07	+1	1773664..1774734	-	356	114797667	-	HNE_1732	-	hypothetical protein
1704	 62.73	0	1774739..1776289	-	516	114798439	pgi	HNE_1733	-	glucose-6-phosphate isomerase
1705	 62.22	0	1776506..1777696	+	396	114799205	tuf1	HNE_1734	-	elongation factor Tu
1706	 61.02	0	1777764..1778312	-	182	114800212	-	HNE_1735	-	carboxymuconolactone decarboxylase domain-containing protein
1707	 59.62	0	1778583..1780199	+	538	114799867	-	HNE_1737	-	glycosy hydrolase family protein
1708	 58.57	0	1780289..1781758	+	489	114799637	zwf	HNE_1738	-	glucose-6-phosphate 1-dehydrogenase
1709	 61.32	0	1781763..1782473	+	236	114798389	pgl	HNE_1739	-	6-phosphogluconolactonase
1710	 63.88	0	1782476..1784308	+	610	114797638	edd	HNE_1740	-	phosphogluconate dehydratase
1711	 59.55	0	1784312..1785280	+	322	114800054	glk	HNE_1741	-	glucokinase
1712	 55.20	-1	1785466..1785840	+	124	114798172	nuoA	HNE_1742	-	NADH-quinone oxidoreductase, A subunit
1713	 61.61	0	1785840..1786412	+	190	114799608	nuoB	HNE_1743	-	NADH dehydrogenase subunit B
1714	 60.26	0	1786424..1787032	+	202	114799741	nuoC	HNE_1744	-	NADH dehydrogenase subunit C
1715	 62.17	0	1787064..1788242	+	392	114800277	nuoD	HNE_1745	-	NADH dehydrogenase subunit D
1716	 61.78	0	1788239..1788586	+	115	114799343	-	HNE_1746	-	hypothetical protein
1717	 59.60	0	1788586..1789038	+	150	114798704	-	HNE_1747	-	glyoxalase family protein
1718	 59.82	0	1789039..1789812	+	257	114797708	nuoE	HNE_1748	-	NADH-quinone oxidoreductase, E subunit
1719	 61.39	0	1789816..1791123	+	435	114799778	nuoF	HNE_1749	-	NADH dehydrogenase I subunit F
1720	 58.40	-1	1791137..1791535	+	132	114798795	-	HNE_1750	-	hypothetical protein
1721	 62.10	0	1791542..1793641	+	699	114798223	nuoG	HNE_1751	-	NADH dehydrogenase subunit G
1722	 57.08	-1	1793651..1794745	+	364	114799074	nuoH	HNE_1752	-	NADH dehydrogenase subunit H
1723	 59.26	0	1794742..1795227	+	161	114798298	nuoI	HNE_1753	-	NADH dehydrogenase subunit I
1724	 58.92	0	1795299..1795892	+	197	114797370	nuoJ	HNE_1754	-	NADH-quinone oxidoreductase, J subunit
1725	 52.43	-2	1795896..1796204	+	102	114799864	nuoK	HNE_1755	-	NADH-quinone oxidoreductase, K subunit
1726	 57.32	-1	1796212..1798362	+	716	114798733	nuoL	HNE_1756	-	NADH-quinone oxidoreductase, L subunit
1727	 56.09	-1	1798362..1799864	+	500	114797733	nuoM	HNE_1757	-	NADH-quinone oxidoreductase, M subunit
1728	 55.16	-1	1799869..1801302	+	477	114800320	nuoN	HNE_1758	-	NADH-quinone oxidoreductase, N subunit
1729	 56.51	-1	1801266..1802033	+	255	114798329	-	HNE_1759	-	biotin--acetyl-CoA-carboxylase ligase
1730	 54.04	-2	1802037..1802804	+	255	114799332	-	HNE_1760	-	pantothenate kinase
1731	 55.42	-1	1802801..1804498	+	565	114800376	-	HNE_1761	-	metallo-beta-lactamase family protein
1732	 54.55	-2	1804506..1804934	+	142	114797534	-	HNE_1762	-	methylmalonyl-CoA epimerase
1733	 55.00	-1	1804934..1805173	+	79	114800295	-	HNE_1763	-	hypothetical protein
1734	 56.36	-1	1805221..1806540	+	439	114799658	proS	HNE_1764	-	prolyl-tRNA synthetase
1735	 56.13	-1	1806549..1807820	+	423	114798078	-	HNE_1765	-	LolC/E family lipoprotein releasing system, transmembrane protein
1736	 57.50	-1	1807817..1808503	+	228	114797117	-	HNE_1766	-	lipoprotein releasing system, ATP-binding protein,-like protein
1737	 55.45	-1	1808583..1812005	+	1140	114800101	dnaE	HNE_1767	-	DNA polymerase III, alpha subunit
1738	 58.21	-1	1812145..1812936	+	263	114799137	rpsB	HNE_1768	-	ribosomal protein S2
1739	 55.85	-1	1812975..1813880	+	301	114799266	tsf	HNE_1769	-	translation elongation factor Ts
1740	 54.50	-2	1813991..1814746	+	251	114798646	pyrH	HNE_1770	-	uridylate kinase
1741	 55.32	-1	1814743..1815297	+	184	114797846	frr	HNE_1771	-	ribosome recycling factor
1742	 54.41	-2	1815297..1816055	+	252	114798355	uppS	HNE_1772	-	undecaprenyl diphosphate synthase
1743	 56.04	-1	1816055..1816873	+	272	114798911	cdsA	HNE_1773	-	phosphatidate cytidylyltransferase
1744	 55.36	-1	1816880..1818073	+	397	114799124	dxr	HNE_1774	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1745	 54.38	-2	1818078..1819241	+	387	114800133	-	HNE_1775	-	M50 family peptidase
1746	 53.68	-2	1819278..1821842	+	854	114797815	-	HNE_1776	-	OMP85 family outer membrane protein
1747	 52.76	-2	1821875..1822471	+	198	114798539	-	HNE_1777	-	OmpH family outer membrane protein
1748	 58.21	-1	1822484..1823500	+	338	114798725	lpxD	HNE_1778	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1749	 55.85	-1	1823540..1824334	+	264	114799420	lpxA	HNE_1779	-	acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase
1750	 59.48	0	1824336..1825184	+	282	114797181	-	HNE_1780	-	hypothetical protein
1751	 56.18	-1	1825181..1826353	+	390	114800386	lpxB	HNE_1781	-	lipid-A-disaccharide synthase
1752	 57.70	-1	1826343..1827647	-	434	114797964	gltA	HNE_1782	-	citrate synthase I
1753	 58.93	0	1827695..1829155	-	486	114798943	gltX1	HNE_1783	-	glutamyl-tRNA synthetase
1754	 59.47	0	1829459..1829722	-	87	114798535	-	HNE_1784	-	hypothetical protein
1755	 56.50	-1	1829709..1830485	+	258	114799405	-	HNE_1785	-	hypothetical protein
1756	 57.02	-1	1830466..1831149	-	227	114797550	lexA	HNE_1786	-	LexA repressor
1757	 57.64	-1	1831216..1832013	-	265	114800153	trpC	HNE_1787	-	indole-3-glycerol phosphate synthase
1758	 60.72	0	1832016..1833041	-	341	114797113	trpD	HNE_1788	-	anthranilate phosphoribosyltransferase
1759	 55.50	-1	1833038..1833610	-	190	114798771	trpG	HNE_1789	-	anthranilate synthase component II
1760	 58.39	-1	1833607..1835031	-	474	114799062	trpE	HNE_1790	-	anthranilate synthase component I
1761	 59.51	0	1835028..1836941	-	637	114799881	-	HNE_1791	-	peptidylprolyl cis-trans isomerase,-like protein
1762	 59.60	0	1837029..1837778	+	249	114799671	tpiA	HNE_1792	-	triosephosphate isomerase
62.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.