IslandPathversion 1.0

IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.10 STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1497	 59.94	0	1553199..1554149	+	316	114797305	cobD	HNE_1519	-	cobalamin biosynthesis protein CobD
1498	 59.62	0	1554146..1555138	+	330	114798819	-	HNE_1520	-	putative threonine-phosphate decarboxylase CobC
1499	 55.23	-1	1555128..1555634	-	168	114798312	cobU	HNE_1521	-	cobinamide kinase / cobinamide phosphate guanyltransferase
1500	 63.13	0	1556123..1556773	-	216	114799223	alkB	HNE_1522	-	alkylated DNA repair protein AlkB
1501	 58.21	-1	1557069..1557671	-	200	114799953	-	HNE_1523	-	hypothetical protein
1502	 62.44	0	1557891..1558481	-	196	114799759	-	HNE_1524	-	hypothetical protein
1503	 63.09	0	1558670..1559731	+	353	114797196	-	HNE_1525	-	sensor histidine kinase
1504	 60.96	0	1559901..1560758	+	285	114798738	-	HNE_1527	-	hypothetical protein
1505	 58.17	-1	1560761..1561066	+	101	114797735	-	HNE_1528	-	hypothetical protein
1506	 56.30	-1	1561115..1561384	-	89	114800310	-	HNE_1529	-	hypothetical protein
1507	 60.47	0	1561387..1561644	-	85	114799257	-	HNE_1530	-	hypothetical protein
1508	 62.43	0	1562342..1563262	+	306	114798315	-	HNE_1531	-	LysR family transcriptional regulator
1509	 61.74	0	1563868..1564659	-	263	114797383	-	HNE_1532	-	Fic family protein
1510	 63.69	0	1565120..1566127	+	335	114798209	-	HNE_1533	-	HlyD family secretion protein
1511	 61.86	0	1566154..1567881	+	575	114797777	-	HNE_1534	-	ABC transporter, ATP-binding protein
1512	 59.72	0	1567881..1569017	+	378	114800421	-	HNE_1535	-	ABC transporter, permease protein
1513	 57.95	-1	1569019..1570119	+	366	114799431	-	HNE_1536	-	ABC transporter, permease protein
1514	 57.65	-1	1570120..1570773	+	217	114798028	-	HNE_1537	-	TetR family transcriptional regulator
1515	 56.16	-1	1570858..1571190	-	110	114797066	-	HNE_1538	-	hypothetical protein
1516	 59.10	0	1571347..1571835	-	162	114800024	-	HNE_1539	-	hemerythrin HHE cation binding domain-containing protein
1517	 57.75	-1	1571832..1572257	-	141	114798557	-	HNE_1540	-	hypothetical protein
1518	 62.29	0	1572392..1572802	+	136	114798504	-	HNE_1541	-	putative transcriptional regulator
1519	 59.40	0	1572881..1573114	+	77	114797536	-	HNE_1542	-	hypothetical protein
1520	 55.24	-1	1573133..1573237	+	34	114798419	-	HNE_1543	-	hypothetical protein
1521	 52.85	-2	1573227..1573349	-	40	114800105	-	HNE_1544	-	hypothetical protein
1522	 54.26	-2	1573333..1573461	-	42	114798949	-	HNE_1545	-	hypothetical protein
1523	 57.52	-1	1573521..1574384	-	287	114797933	-	HNE_1546	-	hypothetical protein
1524	 62.32	0	1574445..1575158	+	237	114797570	-	HNE_1547	-	NnrU family protein
1525	 60.83	0	1575196..1575435	+	79	114800393	-	HNE_1548	-	putative molybdopterin converting factor
1526	 58.86	0	1575445..1575918	+	157	114800205	-	HNE_1549	-	hypothetical protein
1527	 58.63	0	1575935..1576432	+	165	114799331	moaE2	HNE_1550	-	molybdopterin converting factor, subunit 2
1528	 60.89	0	1576419..1576955	+	178	114797493	moaB2	HNE_1551	-	molybdenum cofactor biosynthesis protein B
1529	 62.99	0	1576952..1577440	+	162	114799818	moaC2	HNE_1552	-	molybdenum cofactor biosynthesis protein C
1530	 64.22	0	1577437..1578621	+	394	114798744	moeA1	HNE_1553	-	molybdopterin biosynthesis protein MoeA
1531	 54.50	-2	1578652..1579029	+	125	114797389	-	HNE_1554	-	limonene-1,2-epoxide hydrolase
1532	 60.84	0	1579171..1581366	+	731	114797863	-	HNE_1555	-	ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
1533	 61.15	0	1581388..1582584	+	398	114798679	-	HNE_1556	-	NnrS family protein
1534	 60.52	0	1582786..1583778	+	330	114797605	moaA	HNE_1557	-	molybdenum cofactor biosynthesis protein A
1535	 58.27	-1	1583775..1584548	-	257	114798895	ftrB	HNE_1558	-	transcriptional activator FtrB
1536	 59.65	0	1584853..1587588	+	911	114798304	narK	HNE_1559	-	nitrite extrusion protein
1537	 59.89	0	1587604..1591338	+	1244	114798640	narG	HNE_1560	-	nitrate reductase, alpha subunit
1538	 57.71	-1	1591335..1592864	+	509	114797890	narH	HNE_1561	-	nitrate reductase, beta subunit
1539	 56.93	-1	1592874..1593551	+	225	114800087	narJ	HNE_1562	-	nitrate reductase molybdenum cofactor assembly chaperone
1540	 59.52	0	1593548..1594750	+	400	114797260	-	HNE_1563	-	hypothetical protein
1541	 60.70	0	1594775..1595545	+	256	114797366	narI	HNE_1564	-	respiratory nitrate reductase, gamma subunit
1542	 62.47	0	1595542..1596660	+	372	114799875	-	HNE_1565	-	putative peptidylprolyl cis-trans isomerase
1543	 55.44	-1	1596692..1597252	+	186	114798885	-	HNE_1566	-	hypothetical protein
1544	 56.49	-1	1597249..1597887	+	212	114798000	-	HNE_1567	-	carbonic anhydrase
1545	 56.87	-1	1598761..1599873	-	370	114800441	-	HNE_1568	-	hypothetical protein
1546	 58.05	-1	1600152..1600778	+	208	114799679	-	HNE_1569	-	TetR family transcriptional regulator
1547	 55.85	-1	1600819..1602084	-	421	114798420	-	HNE_1570	-	acyl-CoA dehydrogenase family protein
1548	 58.59	0	1602237..1602335	+	32	114797699	-	HNE_1571	-	hypothetical protein
1549	 59.71	0	1602374..1603984	-	536	114798040	-	HNE_1572	-	GMC oxidoreductase
1550	 63.83	0	1605475..1606671	-	398	114798228	moeA2	HNE_1574	-	molybdopterin biosynthesis protein MoeA
1551	 56.73	-1	1607217..1608584	+	455	114798991	otsA	HNE_1575	-	UDP-forming alpha,alpha-trehalose-phosphate synthase
1552	 57.55	-1	1608637..1609338	+	233	114798428	otsB	HNE_1576	-	trehalose-phosphatase
1553	 58.14	-1	1609335..1611104	+	589	114799613	-	HNE_1577	-	glycosy hydrolase family protein
1554	 52.85	-2	1611133..1612254	-	373	114797441	-	HNE_1578	-	hypothetical protein
1555	 55.05	-1	1612283..1613005	-	240	114798017	-	HNE_1579	-	nucleotidyltransferase family protein
1556	 57.12	-1	1613002..1613682	-	226	114799011	-	HNE_1580	-	HAD family hydrolase
1557	 56.74	-1	1613688..1614896	-	402	114800452	-	HNE_1581	-	putative phosphatidyltransferase
1558	 57.82	-1	1614895..1615335	+	146	114797912	-	HNE_1582	-	hypothetical protein
1559	 58.63	0	1615358..1616116	-	252	114797150	-	HNE_1583	-	hypothetical protein
1560	 56.28	-1	1616152..1617306	-	384	114799090	-	HNE_1584	-	hypothetical protein
1561	 55.76	-1	1617333..1617818	-	161	114799914	-	HNE_1585	-	hypothetical protein
1562	 59.69	0	1617965..1619140	+	391	114797170	-	HNE_1586	-	putative permease
1563	 58.14	-1	1619137..1620192	+	351	114798132	-	HNE_1587	-	putative permease
1564	 59.40	0	1620189..1621151	+	320	114799597	-	HNE_1588	-	hypothetical protein
1565	 57.39	-1	1621148..1622074	+	308	114800425	-	HNE_1589	-	hypothetical protein
1566	 59.21	0	1622095..1623288	-	397	114797693	-	HNE_1590	-	putative serine C-palmitoyltransferase
1567	 48.45	-2	1623278..1623535	-	85	114798454	acpP1	HNE_1591	-	acyl carrier protein
1568	 60.02	0	1623501..1624493	-	330	114797677	-	HNE_1592	-	putative UDP-glucose 4-epimerase
1569	 61.37	0	1624512..1626287	-	591	114797857	-	HNE_1593	-	putative AMP binding protein
1570	 60.00	0	1626486..1627790	-	434	114798863	-	HNE_1594	-	polysaccharide biosynthesis family protein
1571	 62.36	0	1628222..1629451	+	409	114799339	-	HNE_1596	-	phage integrase family site specific recombinase
1572	 51.08	-2	1629582..1629812	-	76	114800432	-	HNE_1597	-	DNA-binding protein
1573	 53.00	-2	1629960..1630376	+	138	114797198	-	HNE_1598	-	hypothetical protein
1574	 52.47	-2	1630706..1632163	-	485	114799629	-	HNE_1599	-	hypothetical protein
1575	 55.99	-1	1632909..1634987	+	692	114799218	-	HNE_1600	-	hypothetical protein
1576	 63.24	0	1636129..1637556	+	475	114798366	-	HNE_1602	-	putative 6-aminohexanoate-cyclic-dimer hydrolase
1577	 66.03	+1	1637611..1638546	-	311	114799182	-	HNE_1603	-	putative oxidoreductase
1578	 67.18	+1	1638546..1639526	-	326	114799460	-	HNE_1604	-	hypothetical protein
1579	 61.88	0	1639523..1640170	-	215	114797398	-	HNE_1605	-	acetyltransferase
1580	 61.46	0	1640251..1640826	+	191	114797884	-	HNE_1606	-	TetR family transcriptional regulator
1581	 52.42	-2	1640976..1641656	-	226	114798686	-	HNE_1607	-	hypothetical protein
1582	 60.84	0	1641813..1643819	-	668	114799769	-	HNE_1608	-	beta-lactamase
1583	 58.49	0	1643816..1644952	-	378	114797864	-	HNE_1609	-	hypothetical protein
1584	 60.32	0	1644949..1646019	-	356	114798174	-	HNE_1610	-	mandelate racemase/muconate lactonizing enzyme family protein
1585	 55.99	-1	1646125..1648494	-	789	114798992	-	HNE_1611	-	TonB-dependent receptor
1586	 55.24	-1	1648558..1648662	-	34	114800158	-	HNE_1612	-	hypothetical protein
1587	 54.32	-2	1648706..1649191	-	161	114798269	-	HNE_1613	-	AsnC family transcriptional regulator
1588	 52.86	-2	1649197..1649616	+	139	114800015	-	HNE_1614	-	hypothetical protein
1589	 61.07	0	1649609..1650697	+	362	114799095	ldh1	HNE_1615	-	leucine dehydrogenase
1590	 58.51	0	1650787..1651632	-	281	114798514	-	HNE_1616	-	hypothetical protein
1591	 58.30	-1	1651776..1654415	-	879	114797594	-	HNE_1617	-	outer membrane receptor (OMR) family protein
1592	 61.32	0	1654802..1655362	-	186	114799689	-	HNE_1618	-	ANTAR domain-containing protein
1593	 59.42	0	1655524..1655661	+	45	114798465	-	HNE_1619	-	hypothetical protein
1594	 62.38	0	1655756..1657552	-	598	114797678	-	HNE_1620	-	hypothetical protein
1595	 59.96	0	1657866..1658834	+	322	114797403	-	HNE_1621	-	2-nitropropane dioxygenase family oxidoreductase
1596	 62.58	0	1658917..1660458	-	513	114799145	-	HNE_1622	-	TraG/TraD family protein
62.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.