IslandPathversion 1.0

IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.10 STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
106	 61.44	0	94489..95349	+	286	114798310	-	HNE_0106	-	CBS/transporter associated domain-containing protein
107	 61.44	0	95356..96999	+	547	114800455	lnt	HNE_0107	-	apolipoprotein N-acyltransferase
108	 57.53	-1	97041..97478	+	145	114799525	-	HNE_0108	-	DNA-binding protein
109	 61.36	0	97510..98169	+	219	114798099	trmB	HNE_0109	-	tRNA (guanine-N(7))-methyltransferase
110	 52.38	-2	98355..98564	+	69	114797127	-	HNE_0110	-	cold shock DNA-binding protein
111	 61.83	0	98773..99372	+	199	114800120	-	HNE_0111	-	hypothetical protein
112	 61.10	0	99369..101147	+	592	114799070	nusA	HNE_0112	-	transcription termination factor NusA
113	 61.57	0	101122..101808	+	228	114798650	-	HNE_0113	-	hypothetical protein
114	 62.72	0	101864..104425	+	853	114797688	infB	HNE_0114	-	translation initiation factor IF-2
115	 62.75	0	104435..104842	+	135	114799473	rbfA	HNE_0115	-	ribosome-binding factor A
116	 62.01	0	105005..105562	+	185	114800142	-	HNE_0116	-	hypothetical protein
117	 64.54	0	105695..106636	+	313	114799976	truB	HNE_0117	-	tRNA pseudouridine synthase B
118	 66.67	+1	106637..106873	-	78	114797236	-	HNE_0118	-	hypothetical protein
119	 61.86	0	107521..108228	-	235	114797682	-	HNE_0119	-	putative lipoprotein
120	 62.28	0	108400..108900	+	166	114800218	msrB1	HNE_0120	-	methionine-R-sulfoxide reductase
121	 67.94	+1	108966..109358	-	130	114798277	-	HNE_0121	-	hypothetical protein
122	 61.90	0	109355..109690	-	111	114797689	-	HNE_0122	-	hypothetical protein
123	 64.47	0	109703..110338	-	211	114797302	-	HNE_0123	-	hypothetical protein
124	 69.89	+2	110388..110759	-	123	114798871	-	HNE_0124	-	hypothetical protein
125	 61.94	0	110804..111586	-	260	114797825	bdhA	HNE_0125	-	3-hydroxybutyrate dehydrogenase
126	 61.38	0	111682..112116	+	144	114800450	-	HNE_0126	-	hypothetical protein
127	 66.24	+1	112243..112947	+	234	114799432	-	HNE_0127	-	hypothetical protein
128	 66.67	+1	112944..113813	+	289	114799810	pyrF	HNE_0128	-	orotidine 5'-phosphate decarboxylase
129	 63.93	0	113966..116119	+	717	114797244	adhA	HNE_0129	-	alcohol dehydrogenase (acceptor)
130	 65.00	0	116258..116797	+	179	114798229	-	HNE_0130	-	hypothetical protein
131	 59.39	0	116868..117692	+	274	114797508	-	HNE_0131	-	hypothetical protein
132	 62.34	0	117676..118368	-	230	114800131	-	HNE_0132	-	glutathione S-transferase
133	 65.99	+1	118365..118661	-	98	114797485	-	HNE_0133	-	hypothetical protein
134	 56.92	-1	118811..119518	+	235	114798071	-	HNE_0134	-	TetR family transcriptional regulator
135	 64.67	0	119583..119732	+	49	114799071	-	HNE_0135	-	hypothetical protein
136	 68.49	+1	119883..120980	-	365	114797789	gcp	HNE_0136	-	O-sialoglycoprotein endopeptidase
137	 68.02	+1	121016..121756	-	246	114798778	-	HNE_0137	-	YceI family protein
138	 58.80	0	122241..122672	+	143	114799309	-	HNE_0138	-	hypothetical protein
139	 61.43	0	122692..124506	-	604	114800355	lepA	HNE_0139	-	GTP-binding protein LepA
140	 60.80	0	124623..125474	+	283	114797303	-	HNE_0140	-	hypothetical protein
141	 62.58	0	125443..126273	+	276	114798287	-	HNE_0141	-	hypothetical protein
142	 64.58	0	126362..126937	+	191	114800011	-	HNE_0142	-	putative lipoprotein
143	 61.93	0	126950..128047	+	365	114798450	-	HNE_0143	-	Rieske 2Fe-2S family protein
144	 61.20	0	128185..128769	+	194	114797636	-	HNE_0144	-	fasciclin domain-containing protein
145	 67.26	+1	128909..129412	+	167	114799962	ruvC	HNE_0145	-	crossover junction endodeoxyribonuclease RuvC
146	 65.38	0	129409..130032	+	207	114798884	ruvA	HNE_0146	-	Holliday junction DNA helicase RuvA
147	 66.47	+1	130029..131063	+	344	114800414	ruvB	HNE_0147	-	Holliday junction DNA helicase B
148	 68.42	+1	131064..131462	-	132	114799614	-	HNE_0148	-	hypothetical protein
149	 62.83	0	131539..132684	+	381	114797615	-	HNE_0149	-	hypothetical protein
150	 58.99	0	132681..133136	+	151	114797377	-	HNE_0150	-	thioesterase family protein
151	 62.73	0	133454..134164	+	236	114799599	tolQ	HNE_0151	-	protein TolQ
152	 62.89	0	134177..134626	+	149	114799773	-	HNE_0152	-	ExbD/TolR family transport energizing protein
153	 62.66	0	134652..135575	+	307	114798960	-	HNE_0153	-	hypothetical protein
154	 63.05	0	135616..136971	+	451	114798605	tolB	HNE_0154	-	tolB protein
155	 61.88	0	137204..137746	+	180	114797840	-	HNE_0155	-	ompA family protein
156	 66.25	+1	137861..138817	+	318	114800143	-	HNE_0156	-	hypothetical protein
157	 65.49	0	138805..139908	+	367	114799417	tilS	HNE_0157	-	tRNA(Ile)-lysidine synthetase
158	 61.25	0	139957..141876	+	639	114797326	ftsH	HNE_0158	-	ATP-dependent metalloprotease FtsH
159	 61.80	0	141950..142606	+	218	114800066	-	HNE_0159	-	hypothetical protein
160	 61.21	0	142647..142976	+	109	114797110	-	HNE_0160	-	hypothetical protein
161	 59.82	0	143079..143837	+	252	114799876	-	HNE_0161	-	hypothetical protein
162	 60.54	0	143838..145013	-	391	114798254	-	HNE_0162	-	L-carnitine dehydratase
163	 63.17	0	145081..146508	-	475	114797399	-	HNE_0163	-	hypothetical protein
164	 57.60	-1	146696..149584	+	962	114799790	-	HNE_0164	-	TonB-dependent receptor
165	 59.34	0	149724..152084	-	786	114798938	-	HNE_0165	-	tonB dependent receptor
166	 59.35	0	152262..153218	-	318	114798639	-	HNE_0166	-	GDXG family lipase
167	 59.76	0	153300..155153	-	617	114797895	fcs1	HNE_0167	-	acyl-CoA synthetase
168	 59.93	0	155246..156595	-	449	114800209	glmM	HNE_0168	-	phosphoglucosamine mutase
169	 61.34	0	156619..157407	-	262	114799459	cysQ	HNE_0169	-	3'(2'),5'-bisphosphate nucleotidase
170	 57.30	-1	157423..158319	-	298	114797197	-	HNE_0170	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
171	 60.80	0	158401..159627	-	408	114797934	ilvA	HNE_0171	-	threonine dehydratase
172	 59.88	0	159673..161544	-	623	114797610	-	HNE_0172	-	peptide ABC transporter, ATP-binding protein
173	 58.44	0	161673..162353	-	226	114800389	-	HNE_0173	-	putative outer membrane protein OmpW
174	 60.14	0	162628..163761	+	377	114798252	gbd	HNE_0174	-	4-hydroxybutyrate dehydrogenase, NAD-dependent
175	 57.19	-1	163771..164445	+	224	114797489	-	HNE_0175	-	hypothetical protein
176	 57.98	-1	164452..165510	-	352	114799802	-	HNE_0176	-	3-phytase
177	 60.64	0	165592..166470	-	292	114798930	-	HNE_0177	-	CHAD domain-containing protein
178	 58.39	-1	166626..167048	+	140	114798757	-	HNE_0178	-	hypothetical protein
179	 59.64	0	167045..167428	-	127	114797635	-	HNE_0179	-	hypothetical protein
180	 59.58	0	167642..168940	+	432	114800245	phaZ	HNE_0180	-	polyhydroxyalkanoate depolymerase, intracellular
181	 60.80	0	168947..170020	-	357	114798354	-	HNE_0181	-	cysteine synthase/cystathionine beta-synthase family protein
182	 53.33	-2	170081..170575	+	164	114798689	-	HNE_0182	-	AsnC family transcriptional regulator
183	 61.50	0	170572..171423	-	283	114797420	-	HNE_0183	-	hypothetical protein
184	 62.47	0	171493..172302	-	269	114800197	-	HNE_0184	-	zinc/iron ABC transporter permease
185	 60.16	0	172494..173138	+	214	114798529	-	HNE_0185	-	putative lipoprotein
186	 64.22	0	173147..173842	+	231	114797981	-	HNE_0186	-	ABC transporter, ATP-binding protein
187	 62.10	0	173839..175107	+	422	114800526	-	HNE_0187	-	ABC transporter, permease protein
188	 61.29	0	175156..175881	+	241	114797268	-	HNE_0188	-	putative lipoprotein
189	 57.86	-1	175881..176516	+	211	114798003	-	HNE_0189	-	HAD family hydrolase
190	 57.97	-1	176661..177074	-	137	114798146	mscL	HNE_0190	-	large conductance mechanosensitive channel protein
191	 63.00	0	177183..177482	-	99	114798899	ihfB	HNE_0191	-	integration host factor, beta subunit
192	 61.26	0	177598..179577	-	659	114797862	rpsA	HNE_0192	-	30S ribosomal protein S1
193	 62.91	0	179719..180357	-	212	114798672	cmk	HNE_0193	-	cytidylate kinase
194	 63.74	0	180418..181509	-	363	114799497	-	HNE_0194	-	NADH:flavin oxidoreductase/NADH oxidase family protein
195	 65.91	+1	181563..182882	-	439	114800272	aroA	HNE_0195	-	3-phosphoshikimate 1-carboxyvinyltransferase
196	 55.49	-1	183012..183530	+	172	114798197	-	HNE_0196	-	hypothetical protein
197	 59.17	0	184001..184240	+	79	114800391	-	HNE_0198	-	hypothetical protein
198	 61.70	0	184343..185590	+	415	114799624	-	HNE_0199	-	putative lipoprotein
199	 63.77	0	185603..186637	+	344	114799280	-	HNE_0200	-	putative lipoprotein
200	 65.81	+1	186634..187098	+	154	114798243	-	HNE_0201	-	YaiI/YqxD family protein
201	 61.95	0	187145..187759	+	204	114797270	-	HNE_0202	-	putative exonuclease
202	 62.54	0	187861..188538	+	225	114799884	-	HNE_0203	-	hypothetical protein
203	 65.18	0	188525..189061	+	178	114798835	-	HNE_0204	-	OstA family protein
204	 60.54	0	189155..189889	+	244	114797827	-	HNE_0205	-	ABC transporter, ATP-binding protein
205	 63.53	0	189908..191407	+	499	114800351	rpoN	HNE_0206	-	RNA polymerase factor sigma-54
62.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.