IslandPathversion 1.0

IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.10 STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1447	 61.52	0	1492582..1493844	+	420	114798594	-	HNE_1467	-	beta-lactamase
1448	 64.06	0	1494075..1494995	+	306	114799401	-	HNE_1468	-	LysR family transcriptional regulator
1449	 58.12	-1	1495006..1495707	-	233	114798151	-	HNE_1469	-	cyclic nucleotide-binding protein
1450	 59.56	0	1495892..1498114	+	740	114797811	-	HNE_1470	-	putative TonB dependent receptor
1451	 62.10	0	1498175..1499554	+	459	114797255	-	HNE_1471	-	hypothetical protein
1452	 55.99	-1	1499592..1499900	+	102	114800049	-	HNE_1472	-	hypothetical protein
1453	 60.34	0	1499960..1500718	+	252	114799085	-	HNE_1473	-	aldolase, class II
1454	 60.66	0	1500784..1502181	+	465	114798526	-	HNE_1474	-	major facilitator family transporter
1455	 61.54	0	1502482..1503495	-	337	114797371	-	HNE_1475	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
1456	 62.21	0	1503517..1504122	-	201	114800104	leuD	HNE_1476	-	3-isopropylmalate dehydratase, small subunit
1457	 63.73	0	1504112..1505542	-	476	114798881	leuC2	HNE_1477	-	isopropylmalate isomerase large subunit
1458	 57.02	-1	1505634..1505747	+	37	114797983	-	HNE_1478	-	hypothetical protein
1459	 61.95	0	1505868..1507838	-	656	114797316	-	HNE_1479	-	GGDEF/EAL domain-containing protein
1460	 67.54	+1	1508304..1508531	-	75	114800439	-	HNE_1480	-	hypothetical protein
1461	 54.23	-2	1508639..1509217	-	192	114798855	-	HNE_1481	-	hypothetical protein
1462	 58.43	-1	1509436..1510770	-	444	114798385	-	HNE_1482	-	hypothetical protein
1463	 62.44	0	1511028..1513418	-	796	114797834	-	HNE_1483	-	copper-translocating P-type ATPase
1464	 58.15	-1	1513670..1514467	-	265	114797294	copB	HNE_1484	-	copper resistance protein B
1465	 61.14	0	1514467..1516311	-	614	114798342	-	HNE_1485	-	CopA family copper resistance protein
1466	 58.05	-1	1516382..1517089	-	235	114798721	-	HNE_1486	-	hypothetical protein
1467	 55.80	-1	1517631..1517906	+	91	114799886	-	HNE_1487	-	hypothetical protein
1468	 56.60	-1	1517957..1518115	-	52	114799673	-	HNE_1488	-	hypothetical protein
1469	 59.41	0	1518165..1519211	-	348	114798432	-	HNE_1489	-	hypothetical protein
1470	 60.32	0	1519664..1521649	+	661	114797952	-	HNE_1490	-	choline/carnitine/betaine transporter
1471	 63.07	0	1521965..1522825	+	286	114800459	-	HNE_1491	-	pirin family protein
1472	 58.52	0	1522946..1524025	-	359	114799249	-	HNE_1492	-	metallo-beta-lactamase family protein
1473	 61.39	0	1524067..1525185	-	372	114797944	-	HNE_1493	-	aryl-alcohol dehydrogenase
1474	 63.67	0	1525355..1526254	+	299	114797657	-	HNE_1494	-	LysR family transcriptional regulator
1475	 60.32	0	1527234..1527800	+	188	114799531	-	HNE_1495	-	ECF sigma factor family protein
1476	 62.77	0	1527903..1530389	+	828	114800033	-	HNE_1496	-	serine/threonine protein kinase
1477	 59.89	0	1530514..1530867	+	117	114797869	-	HNE_1497	-	hypothetical protein
1478	 63.31	0	1530923..1531399	+	158	114798690	-	HNE_1498	-	putative lipoprotein
1479	 62.37	0	1531468..1531932	+	154	114800470	-	HNE_1499	-	putative lipoprotein
1480	 62.06	0	1531947..1532510	+	187	114799544	-	HNE_1500	-	putative lipoprotein
1481	 62.08	0	1532579..1533145	-	188	114798032	-	HNE_1501	-	putative lipoprotein
1482	 63.18	0	1533186..1533989	-	267	114797141	-	HNE_1502	-	hypothetical protein
1483	 63.92	0	1534122..1537250	+	1042	114800061	-	HNE_1503	-	Tat pathway signal sequence domain-containing protein
1484	 56.15	-1	1538187..1538804	-	205	114800265	-	HNE_1505	-	TetR family transcriptional regulator
1485	 56.10	-1	1538885..1539376	+	163	114798045	-	HNE_1506	-	hypothetical protein
1486	 57.96	-1	1540249..1541190	-	313	114797095	-	HNE_1507	-	putative diguanylate cyclase/response regulator
1487	 58.59	0	1541190..1544024	-	944	114800094	-	HNE_1508	-	sensor histidine kinase/response regulator
1488	 60.00	0	1544021..1544410	-	129	114799067	-	HNE_1509	-	hypothetical protein
1489	 63.69	0	1545079..1546086	+	335	114799398	-	HNE_1510	-	putative nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase CobT
1490	 63.24	0	1546083..1546841	+	252	114798325	-	HNE_1511	-	cobalamin 5'-phosphate synthase
1491	 58.96	0	1546832..1547350	+	172	114797780	-	HNE_1512	-	phosphoglycerate mutase family protein
1492	 55.39	-1	1547362..1547964	+	200	114800288	cobO	HNE_1513	-	cob(I)alamin adenosyltransferase
1493	 57.20	-1	1548377..1550224	+	615	114798415	-	HNE_1514	-	TonB-dependent receptor
1494	 60.52	0	1550234..1551079	+	281	114799541	-	HNE_1515	-	putative iron ABC transporter, periplasmic iron-binding protein
1495	 59.39	0	1551076..1552065	+	329	114797228	-	HNE_1516	-	iron compound ABC transporter, permease protein
1496	 62.60	0	1552058..1552819	+	253	114797990	-	HNE_1517	-	iron compound ABC transporter, ATP-binding protein
1497	 59.94	0	1553199..1554149	+	316	114797305	cobD	HNE_1519	-	cobalamin biosynthesis protein CobD
1498	 59.62	0	1554146..1555138	+	330	114798819	-	HNE_1520	-	putative threonine-phosphate decarboxylase CobC
1499	 55.23	-1	1555128..1555634	-	168	114798312	cobU	HNE_1521	-	cobinamide kinase / cobinamide phosphate guanyltransferase
1500	 63.13	0	1556123..1556773	-	216	114799223	alkB	HNE_1522	-	alkylated DNA repair protein AlkB
1501	 58.21	-1	1557069..1557671	-	200	114799953	-	HNE_1523	-	hypothetical protein
1502	 62.44	0	1557891..1558481	-	196	114799759	-	HNE_1524	-	hypothetical protein
1503	 63.09	0	1558670..1559731	+	353	114797196	-	HNE_1525	-	sensor histidine kinase
1504	 60.96	0	1559901..1560758	+	285	114798738	-	HNE_1527	-	hypothetical protein
1505	 58.17	-1	1560761..1561066	+	101	114797735	-	HNE_1528	-	hypothetical protein
1506	 56.30	-1	1561115..1561384	-	89	114800310	-	HNE_1529	-	hypothetical protein
1507	 60.47	0	1561387..1561644	-	85	114799257	-	HNE_1530	-	hypothetical protein
1508	 62.43	0	1562342..1563262	+	306	114798315	-	HNE_1531	-	LysR family transcriptional regulator
1509	 61.74	0	1563868..1564659	-	263	114797383	-	HNE_1532	-	Fic family protein
1510	 63.69	0	1565120..1566127	+	335	114798209	-	HNE_1533	-	HlyD family secretion protein
1511	 61.86	0	1566154..1567881	+	575	114797777	-	HNE_1534	-	ABC transporter, ATP-binding protein
1512	 59.72	0	1567881..1569017	+	378	114800421	-	HNE_1535	-	ABC transporter, permease protein
1513	 57.95	-1	1569019..1570119	+	366	114799431	-	HNE_1536	-	ABC transporter, permease protein
1514	 57.65	-1	1570120..1570773	+	217	114798028	-	HNE_1537	-	TetR family transcriptional regulator
1515	 56.16	-1	1570858..1571190	-	110	114797066	-	HNE_1538	-	hypothetical protein
1516	 59.10	0	1571347..1571835	-	162	114800024	-	HNE_1539	-	hemerythrin HHE cation binding domain-containing protein
1517	 57.75	-1	1571832..1572257	-	141	114798557	-	HNE_1540	-	hypothetical protein
1518	 62.29	0	1572392..1572802	+	136	114798504	-	HNE_1541	-	putative transcriptional regulator
1519	 59.40	0	1572881..1573114	+	77	114797536	-	HNE_1542	-	hypothetical protein
1520	 55.24	-1	1573133..1573237	+	34	114798419	-	HNE_1543	-	hypothetical protein
1521	 52.85	-2	1573227..1573349	-	40	114800105	-	HNE_1544	-	hypothetical protein
1522	 54.26	-2	1573333..1573461	-	42	114798949	-	HNE_1545	-	hypothetical protein
1523	 57.52	-1	1573521..1574384	-	287	114797933	-	HNE_1546	-	hypothetical protein
1524	 62.32	0	1574445..1575158	+	237	114797570	-	HNE_1547	-	NnrU family protein
1525	 60.83	0	1575196..1575435	+	79	114800393	-	HNE_1548	-	putative molybdopterin converting factor
1526	 58.86	0	1575445..1575918	+	157	114800205	-	HNE_1549	-	hypothetical protein
1527	 58.63	0	1575935..1576432	+	165	114799331	moaE2	HNE_1550	-	molybdopterin converting factor, subunit 2
1528	 60.89	0	1576419..1576955	+	178	114797493	moaB2	HNE_1551	-	molybdenum cofactor biosynthesis protein B
1529	 62.99	0	1576952..1577440	+	162	114799818	moaC2	HNE_1552	-	molybdenum cofactor biosynthesis protein C
1530	 64.22	0	1577437..1578621	+	394	114798744	moeA1	HNE_1553	-	molybdopterin biosynthesis protein MoeA
1531	 54.50	-2	1578652..1579029	+	125	114797389	-	HNE_1554	-	limonene-1,2-epoxide hydrolase
1532	 60.84	0	1579171..1581366	+	731	114797863	-	HNE_1555	-	ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
1533	 61.15	0	1581388..1582584	+	398	114798679	-	HNE_1556	-	NnrS family protein
1534	 60.52	0	1582786..1583778	+	330	114797605	moaA	HNE_1557	-	molybdenum cofactor biosynthesis protein A
1535	 58.27	-1	1583775..1584548	-	257	114798895	ftrB	HNE_1558	-	transcriptional activator FtrB
1536	 59.65	0	1584853..1587588	+	911	114798304	narK	HNE_1559	-	nitrite extrusion protein
1537	 59.89	0	1587604..1591338	+	1244	114798640	narG	HNE_1560	-	nitrate reductase, alpha subunit
1538	 57.71	-1	1591335..1592864	+	509	114797890	narH	HNE_1561	-	nitrate reductase, beta subunit
1539	 56.93	-1	1592874..1593551	+	225	114800087	narJ	HNE_1562	-	nitrate reductase molybdenum cofactor assembly chaperone
1540	 59.52	0	1593548..1594750	+	400	114797260	-	HNE_1563	-	hypothetical protein
1541	 60.70	0	1594775..1595545	+	256	114797366	narI	HNE_1564	-	respiratory nitrate reductase, gamma subunit
1542	 62.47	0	1595542..1596660	+	372	114799875	-	HNE_1565	-	putative peptidylprolyl cis-trans isomerase
1543	 55.44	-1	1596692..1597252	+	186	114798885	-	HNE_1566	-	hypothetical protein
1544	 56.49	-1	1597249..1597887	+	212	114798000	-	HNE_1567	-	carbonic anhydrase
1545	 56.87	-1	1598761..1599873	-	370	114800441	-	HNE_1568	-	hypothetical protein
1546	 58.05	-1	1600152..1600778	+	208	114799679	-	HNE_1569	-	TetR family transcriptional regulator
62.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.