IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.10   STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1397	 61.68	0	1444292..1444732	+	146	114800511	-	HNE_1414	-	hypothetical protein
1398	 64.13	0	1444779..1445804	+	341	114799720	-	HNE_1415	-	L4BD family NADP-dependent oxidoreductase
1399	 62.33	0	1445876..1446244	+	122	114799730	-	HNE_1416	-	putative lipoprotein
1400	 67.57	+1	1446332..1447105	+	257	114798984	-	HNE_1417	-	putative lipoprotein
1401	 64.27	0	1447108..1448277	-	389	114798688	metC	HNE_1418	-	cystathionine beta-lyase
1402	 64.65	0	1448282..1449124	-	280	114797517	-	HNE_1419	-	putative sulfurtransferase
1403	 63.99	0	1449124..1450131	-	335	114800279	-	HNE_1420	-	cysteine synthase A
1404	 58.07	-1	1450124..1450972	+	282	114799968	-	HNE_1421	-	hypothetical protein
1405	 61.21	0	1450991..1452529	+	512	114797588	-	HNE_1422	-	deoxyribodipyrimidine photolyase-like protein
1406	 60.87	0	1452665..1455043	+	792	114800534	-	HNE_1423	-	putative sensory box-containing diguanylate cyclase
1407	 62.38	0	1455079..1457922	-	947	114799535	-	HNE_1424	-	AsmA family protein
1408	 51.35	-2	1458379..1458489	-	36	114797956	-	HNE_1426	-	hypothetical protein
1409	 62.96	0	1458643..1459236	-	197	114799273	-	HNE_1427	-	hypothetical protein
1410	 65.37	0	1459571..1459801	+	76	114797347	-	HNE_1428	-	DNA-binding protein
1411	 64.36	0	1459912..1460214	-	100	114798352	-	HNE_1429	-	hypothetical protein
1412	 61.26	0	1460242..1461351	+	369	114798464	-	HNE_1430	-	phage integrase family site specific recombinase
1413	 65.87	+1	1461493..1462122	-	209	114798358	-	HNE_1431	-	putative lipoprotein
1414	 65.26	0	1462127..1463761	-	544	114797292	-	HNE_1432	-	OmpA family membrane protein
1415	 64.82	0	1463761..1465443	-	560	114799883	-	HNE_1433	-	hypothetical protein
1416	 59.49	0	1465973..1466209	+	78	114798062	-	HNE_1434	-	hypothetical protein
1417	 57.77	-1	1466483..1467235	+	250	114797098	linC	HNE_1435	-	short chain dehydrogenase
1418	 65.18	0	1467367..1469118	-	583	114800203	-	HNE_1436	-	putative steroid monooxygenase
1419	 61.30	0	1469285..1470403	-	372	114797655	-	HNE_1437	-	hypothetical protein
1420	 59.83	0	1469597..1470634	+	345	114798451	-	HNE_1438	-	hypothetical protein
1421	 58.04	-1	1470648..1470902	-	84	114800030	-	HNE_1439	-	hypothetical protein
1422	 63.11	0	1470924..1471232	-	102	114798037	-	HNE_1440	-	hypothetical protein
1423	 65.85	+1	1471568..1471813	+	81	114799684	-	HNE_1441	-	hypothetical protein
1424	 67.06	+1	1471810..1472061	+	83	114800466	-	HNE_1442	-	hypothetical protein
1425	 58.16	-1	1472225..1473259	+	344	114797750	-	HNE_1443	-	hypothetical protein
1426	 70.12	+2	1473828..1474667	+	279	114797466	-	HNE_1444	-	hypothetical protein
1427	 63.48	0	1474788..1476200	+	470	114798235	-	HNE_1445	-	TraG/TraD family protein
1428	 63.10	0	1476487..1476990	+	167	114798901	-	HNE_1447	-	nuclease domain-containing protein
1429	 67.87	+1	1476997..1477329	-	110	114797601	-	HNE_1448	-	hypothetical protein
1430	 57.49	-1	1477320..1477733	+	137	114798675	-	HNE_1449	-	LuxR family transcriptional regulator
1431	 55.11	-1	1478108..1478332	-	74	114800251	-	HNE_1450	-	hypothetical protein
1432	 59.42	0	1478338..1479855	-	505	114799458	-	HNE_1451	-	FAD-binding domain-containing protein
1433	 60.99	0	1479887..1480837	+	316	114797125	-	HNE_1452	-	LysR family transcriptional regulator
1434	 60.52	0	1480851..1481159	-	102	114797904	-	HNE_1453	-	YciI-like protein
1435	 61.11	0	1481195..1481878	-	227	114800110	-	HNE_1454	-	hypothetical protein
1436	 60.63	0	1481851..1482645	-	264	114799129	-	HNE_1455	-	hypothetical protein
1437	 64.64	0	1482988..1484316	-	442	114798114	-	HNE_1456	-	endonuclease/exonuclease/phosphatase family protein
1438	 59.07	0	1484477..1484713	+	78	114797069	-	HNE_1457	-	hypothetical protein
1439	 60.70	0	1484703..1484903	-	66	114798482	-	HNE_1458	-	hypothetical protein
1440	 69.02	+1	1485031..1485963	+	310	114800130	-	HNE_1459	-	LysR family transcriptional regulator
1441	 63.54	0	1485972..1486259	-	95	114797111	-	HNE_1460	-	hypothetical protein
1442	 66.42	+1	1486256..1486660	-	134	114799791	-	HNE_1461	-	hypothetical protein
1443	 64.25	0	1486865..1487320	+	151	114798994	-	HNE_1462	-	thioesterase family protein
1444	 67.74	+1	1487378..1487842	+	154	114799567	-	HNE_1463	-	cupin domain-containing protein
1445	 63.18	0	1488591..1489853	-	420	114799943	-	HNE_1465	-	TetR family transcriptional regulator
1446	 60.76	0	1490094..1492463	+	789	114798936	-	HNE_1466	-	putative TonB dependent receptor
1447	 61.52	0	1492582..1493844	+	420	114798594	-	HNE_1467	-	beta-lactamase
1448	 64.06	0	1494075..1494995	+	306	114799401	-	HNE_1468	-	LysR family transcriptional regulator
1449	 58.12	-1	1495006..1495707	-	233	114798151	-	HNE_1469	-	cyclic nucleotide-binding protein
1450	 59.56	0	1495892..1498114	+	740	114797811	-	HNE_1470	-	putative TonB dependent receptor
1451	 62.10	0	1498175..1499554	+	459	114797255	-	HNE_1471	-	hypothetical protein
1452	 55.99	-1	1499592..1499900	+	102	114800049	-	HNE_1472	-	hypothetical protein
1453	 60.34	0	1499960..1500718	+	252	114799085	-	HNE_1473	-	aldolase, class II
1454	 60.66	0	1500784..1502181	+	465	114798526	-	HNE_1474	-	major facilitator family transporter
1455	 61.54	0	1502482..1503495	-	337	114797371	-	HNE_1475	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
1456	 62.21	0	1503517..1504122	-	201	114800104	leuD	HNE_1476	-	3-isopropylmalate dehydratase, small subunit
1457	 63.73	0	1504112..1505542	-	476	114798881	leuC2	HNE_1477	-	isopropylmalate isomerase large subunit
1458	 57.02	-1	1505634..1505747	+	37	114797983	-	HNE_1478	-	hypothetical protein
1459	 61.95	0	1505868..1507838	-	656	114797316	-	HNE_1479	-	GGDEF/EAL domain-containing protein
1460	 67.54	+1	1508304..1508531	-	75	114800439	-	HNE_1480	-	hypothetical protein
1461	 54.23	-2	1508639..1509217	-	192	114798855	-	HNE_1481	-	hypothetical protein
1462	 58.43	-1	1509436..1510770	-	444	114798385	-	HNE_1482	-	hypothetical protein
1463	 62.44	0	1511028..1513418	-	796	114797834	-	HNE_1483	-	copper-translocating P-type ATPase
1464	 58.15	-1	1513670..1514467	-	265	114797294	copB	HNE_1484	-	copper resistance protein B
1465	 61.14	0	1514467..1516311	-	614	114798342	-	HNE_1485	-	CopA family copper resistance protein
1466	 58.05	-1	1516382..1517089	-	235	114798721	-	HNE_1486	-	hypothetical protein
1467	 55.80	-1	1517631..1517906	+	91	114799886	-	HNE_1487	-	hypothetical protein
1468	 56.60	-1	1517957..1518115	-	52	114799673	-	HNE_1488	-	hypothetical protein
1469	 59.41	0	1518165..1519211	-	348	114798432	-	HNE_1489	-	hypothetical protein
1470	 60.32	0	1519664..1521649	+	661	114797952	-	HNE_1490	-	choline/carnitine/betaine transporter
1471	 63.07	0	1521965..1522825	+	286	114800459	-	HNE_1491	-	pirin family protein
1472	 58.52	0	1522946..1524025	-	359	114799249	-	HNE_1492	-	metallo-beta-lactamase family protein
1473	 61.39	0	1524067..1525185	-	372	114797944	-	HNE_1493	-	aryl-alcohol dehydrogenase
1474	 63.67	0	1525355..1526254	+	299	114797657	-	HNE_1494	-	LysR family transcriptional regulator
1475	 60.32	0	1527234..1527800	+	188	114799531	-	HNE_1495	-	ECF sigma factor family protein
1476	 62.77	0	1527903..1530389	+	828	114800033	-	HNE_1496	-	serine/threonine protein kinase
1477	 59.89	0	1530514..1530867	+	117	114797869	-	HNE_1497	-	hypothetical protein
1478	 63.31	0	1530923..1531399	+	158	114798690	-	HNE_1498	-	putative lipoprotein
1479	 62.37	0	1531468..1531932	+	154	114800470	-	HNE_1499	-	putative lipoprotein
1480	 62.06	0	1531947..1532510	+	187	114799544	-	HNE_1500	-	putative lipoprotein
1481	 62.08	0	1532579..1533145	-	188	114798032	-	HNE_1501	-	putative lipoprotein
1482	 63.18	0	1533186..1533989	-	267	114797141	-	HNE_1502	-	hypothetical protein
1483	 63.92	0	1534122..1537250	+	1042	114800061	-	HNE_1503	-	Tat pathway signal sequence domain-containing protein
1484	 56.15	-1	1538187..1538804	-	205	114800265	-	HNE_1505	-	TetR family transcriptional regulator
1485	 56.10	-1	1538885..1539376	+	163	114798045	-	HNE_1506	-	hypothetical protein
1486	 57.96	-1	1540249..1541190	-	313	114797095	-	HNE_1507	-	putative diguanylate cyclase/response regulator
1487	 58.59	0	1541190..1544024	-	944	114800094	-	HNE_1508	-	sensor histidine kinase/response regulator
1488	 60.00	0	1544021..1544410	-	129	114799067	-	HNE_1509	-	hypothetical protein
1489	 63.69	0	1545079..1546086	+	335	114799398	-	HNE_1510	-	putative nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase CobT
1490	 63.24	0	1546083..1546841	+	252	114798325	-	HNE_1511	-	cobalamin 5'-phosphate synthase
1491	 58.96	0	1546832..1547350	+	172	114797780	-	HNE_1512	-	phosphoglycerate mutase family protein
1492	 55.39	-1	1547362..1547964	+	200	114800288	cobO	HNE_1513	-	cob(I)alamin adenosyltransferase
1493	 57.20	-1	1548377..1550224	+	615	114798415	-	HNE_1514	-	TonB-dependent receptor
1494	 60.52	0	1550234..1551079	+	281	114799541	-	HNE_1515	-	putative iron ABC transporter, periplasmic iron-binding protein
1495	 59.39	0	1551076..1552065	+	329	114797228	-	HNE_1516	-	iron compound ABC transporter, permease protein
1496	 62.60	0	1552058..1552819	+	253	114797990	-	HNE_1517	-	iron compound ABC transporter, ATP-binding protein
62.10	MEAN

3.66	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.