IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.10   STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1353	 63.06	0	1400058..1401248	-	396	114797331	-	HNE_1370	-	major facilitator family transporter
1354	 62.22	0	1401263..1402297	-	344	114798006	-	HNE_1371	-	dimethylsulfoxide reductase chain B
1355	 62.68	0	1402384..1403286	+	300	114799792	-	HNE_1372	-	LysR family transcriptional regulator
1356	 61.58	0	1403307..1403837	-	176	114800381	-	HNE_1373	-	riboflavin biosynthesis protein RibD domain-containing protein
1357	 63.76	0	1404174..1405550	+	458	114797614	-	HNE_1374	-	glutamate--cysteine ligase
1358	 62.07	0	1405589..1406263	+	224	114798387	-	HNE_1375	-	hypothetical protein
1359	 61.58	0	1406411..1408435	+	674	114800217	-	HNE_1376	-	proton/peptide symporter family protein
1360	 61.62	0	1408518..1409804	-	428	114797476	-	HNE_1377	-	small conductance mechanosensitive ion channel (MscS) family protein
1361	 64.80	0	1409910..1410446	-	178	114798241	-	HNE_1378	-	RNA pseudouridine synthase family protein
1362	 62.75	0	1410647..1411003	+	118	114799018	panD	HNE_1379	-	aspartate alpha-decarboxylase
1363	 58.66	0	1411034..1411495	-	153	114798946	-	HNE_1380	-	MerR family transcriptional regulator
1364	 57.11	-1	1411500..1412294	+	264	114799712	-	HNE_1381	-	hypothetical protein
1365	 64.78	0	1412331..1413335	-	334	114798770	-	HNE_1382	-	luciferase family monooxygenase
1366	 65.71	0	1413457..1414503	-	348	114799553	-	HNE_1383	-	hypothetical protein
1367	 63.66	0	1414500..1415429	-	309	114797621	lgt	HNE_1384	-	prolipoprotein diacylglyceryl transferase
1368	 64.31	0	1415537..1415791	+	84	114798170	-	HNE_1385	-	hypothetical protein
1369	 62.30	0	1415903..1416406	+	167	114798921	-	HNE_1386	-	hypothetical protein
1370	 67.29	+1	1416416..1417222	+	268	114799869	proC	HNE_1387	-	pyrroline-5-carboxylate reductase
1371	 63.64	0	1417243..1417869	+	208	114797672	-	HNE_1388	-	hypothetical protein
1372	 61.36	0	1417866..1418957	+	363	114799215	-	HNE_1389	-	hypothetical protein
1373	 60.78	0	1419207..1419512	+	101	114798007	-	HNE_1390	-	hypothetical protein
1374	 69.21	+1	1419609..1420277	+	222	114800453	-	HNE_1391	-	hypothetical protein
1375	 69.07	+1	1420274..1421230	+	318	114799668	-	HNE_1392	-	putative flagellar motor switch protein FliG
1376	 66.43	+1	1421230..1421643	+	137	114798466	-	HNE_1393	-	hypothetical protein
1377	 61.48	0	1421640..1421909	+	89	114797692	fliN	HNE_1394	-	flagellar motor switch protein FliN
1378	 59.75	0	1421958..1422839	+	293	114798396	phhA	HNE_1395	-	phenylalanine 4-monooxygenase
1379	 60.42	0	1422836..1423459	-	207	114797549	pth	HNE_1396	-	peptidyl-tRNA hydrolase
1380	 61.06	0	1423542..1424201	-	219	114797515	-	HNE_1397	-	ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
1381	 65.37	0	1424368..1425291	-	307	114798544	-	HNE_1398	-	beta-lactamase
1382	 63.54	0	1425405..1426397	-	330	114799486	-	HNE_1399	-	amidohydrolase family protein
1383	 59.14	0	1426597..1426875	+	92	114800479	-	HNE_1400	-	hypothetical protein
1384	 63.97	0	1426885..1428666	+	593	114797134	-	HNE_1401	-	solute/sodium symporter (SSS) family protein
1385	 61.68	0	1428780..1430726	+	648	114798116	acsA	HNE_1402	-	acetate--CoA ligase
1386	 65.13	0	1430821..1431798	+	325	114797096	-	HNE_1403	-	glycosyl transferase, group 2 family protein
1387	 64.28	0	1431795..1433429	-	544	114798077	chvG	HNE_1404	-	sensor histidine kinase ChvG
1388	 60.65	0	1433429..1433893	-	154	114798998	-	HNE_1405	-	putative peptidyl-prolyl cis-trans isomerase, cyclophilin-type
1389	 66.46	+1	1434011..1434484	+	157	114797907	-	HNE_1406	-	hypothetical protein
1390	 66.17	+1	1434481..1435080	-	199	114798655	-	HNE_1407	-	hypothetical protein
1391	 60.23	0	1435034..1435810	-	258	114798039	chvI	HNE_1408	-	DNA-binding response regulator ChvI
1392	 65.19	0	1435952..1436968	-	338	114798912	-	HNE_1409	-	pyridoxal-phosphate-dependent enzyme
1393	 48.90	-2	1437501..1438778	+	425	114800194	-	HNE_1410	-	TonB family protein
1394	 63.57	0	1438809..1440650	-	613	114797337	ilvD	HNE_1411	-	dihydroxy-acid dehydratase
1395	 62.26	0	1440776..1443565	-	929	114798581	polA	HNE_1412	-	DNA polymerase I
1396	 63.29	0	1443734..1444207	+	157	114799565	-	HNE_1413	-	hypothetical protein
1397	 61.68	0	1444292..1444732	+	146	114800511	-	HNE_1414	-	hypothetical protein
1398	 64.13	0	1444779..1445804	+	341	114799720	-	HNE_1415	-	L4BD family NADP-dependent oxidoreductase
1399	 62.33	0	1445876..1446244	+	122	114799730	-	HNE_1416	-	putative lipoprotein
1400	 67.57	+1	1446332..1447105	+	257	114798984	-	HNE_1417	-	putative lipoprotein
1401	 64.27	0	1447108..1448277	-	389	114798688	metC	HNE_1418	-	cystathionine beta-lyase
1402	 64.65	0	1448282..1449124	-	280	114797517	-	HNE_1419	-	putative sulfurtransferase
1403	 63.99	0	1449124..1450131	-	335	114800279	-	HNE_1420	-	cysteine synthase A
1404	 58.07	-1	1450124..1450972	+	282	114799968	-	HNE_1421	-	hypothetical protein
1405	 61.21	0	1450991..1452529	+	512	114797588	-	HNE_1422	-	deoxyribodipyrimidine photolyase-like protein
1406	 60.87	0	1452665..1455043	+	792	114800534	-	HNE_1423	-	putative sensory box-containing diguanylate cyclase
1407	 62.38	0	1455079..1457922	-	947	114799535	-	HNE_1424	-	AsmA family protein
1408	 51.35	-2	1458379..1458489	-	36	114797956	-	HNE_1426	-	hypothetical protein
1409	 62.96	0	1458643..1459236	-	197	114799273	-	HNE_1427	-	hypothetical protein
1410	 65.37	0	1459571..1459801	+	76	114797347	-	HNE_1428	-	DNA-binding protein
1411	 64.36	0	1459912..1460214	-	100	114798352	-	HNE_1429	-	hypothetical protein
1412	 61.26	0	1460242..1461351	+	369	114798464	-	HNE_1430	-	phage integrase family site specific recombinase
1413	 65.87	+1	1461493..1462122	-	209	114798358	-	HNE_1431	-	putative lipoprotein
1414	 65.26	0	1462127..1463761	-	544	114797292	-	HNE_1432	-	OmpA family membrane protein
1415	 64.82	0	1463761..1465443	-	560	114799883	-	HNE_1433	-	hypothetical protein
1416	 59.49	0	1465973..1466209	+	78	114798062	-	HNE_1434	-	hypothetical protein
1417	 57.77	-1	1466483..1467235	+	250	114797098	linC	HNE_1435	-	short chain dehydrogenase
1418	 65.18	0	1467367..1469118	-	583	114800203	-	HNE_1436	-	putative steroid monooxygenase
1419	 61.30	0	1469285..1470403	-	372	114797655	-	HNE_1437	-	hypothetical protein
1420	 59.83	0	1469597..1470634	+	345	114798451	-	HNE_1438	-	hypothetical protein
1421	 58.04	-1	1470648..1470902	-	84	114800030	-	HNE_1439	-	hypothetical protein
1422	 63.11	0	1470924..1471232	-	102	114798037	-	HNE_1440	-	hypothetical protein
1423	 65.85	+1	1471568..1471813	+	81	114799684	-	HNE_1441	-	hypothetical protein
1424	 67.06	+1	1471810..1472061	+	83	114800466	-	HNE_1442	-	hypothetical protein
1425	 58.16	-1	1472225..1473259	+	344	114797750	-	HNE_1443	-	hypothetical protein
1426	 70.12	+2	1473828..1474667	+	279	114797466	-	HNE_1444	-	hypothetical protein
1427	 63.48	0	1474788..1476200	+	470	114798235	-	HNE_1445	-	TraG/TraD family protein
1428	 63.10	0	1476487..1476990	+	167	114798901	-	HNE_1447	-	nuclease domain-containing protein
1429	 67.87	+1	1476997..1477329	-	110	114797601	-	HNE_1448	-	hypothetical protein
1430	 57.49	-1	1477320..1477733	+	137	114798675	-	HNE_1449	-	LuxR family transcriptional regulator
1431	 55.11	-1	1478108..1478332	-	74	114800251	-	HNE_1450	-	hypothetical protein
1432	 59.42	0	1478338..1479855	-	505	114799458	-	HNE_1451	-	FAD-binding domain-containing protein
1433	 60.99	0	1479887..1480837	+	316	114797125	-	HNE_1452	-	LysR family transcriptional regulator
1434	 60.52	0	1480851..1481159	-	102	114797904	-	HNE_1453	-	YciI-like protein
1435	 61.11	0	1481195..1481878	-	227	114800110	-	HNE_1454	-	hypothetical protein
1436	 60.63	0	1481851..1482645	-	264	114799129	-	HNE_1455	-	hypothetical protein
1437	 64.64	0	1482988..1484316	-	442	114798114	-	HNE_1456	-	endonuclease/exonuclease/phosphatase family protein
1438	 59.07	0	1484477..1484713	+	78	114797069	-	HNE_1457	-	hypothetical protein
1439	 60.70	0	1484703..1484903	-	66	114798482	-	HNE_1458	-	hypothetical protein
1440	 69.02	+1	1485031..1485963	+	310	114800130	-	HNE_1459	-	LysR family transcriptional regulator
1441	 63.54	0	1485972..1486259	-	95	114797111	-	HNE_1460	-	hypothetical protein
1442	 66.42	+1	1486256..1486660	-	134	114799791	-	HNE_1461	-	hypothetical protein
1443	 64.25	0	1486865..1487320	+	151	114798994	-	HNE_1462	-	thioesterase family protein
1444	 67.74	+1	1487378..1487842	+	154	114799567	-	HNE_1463	-	cupin domain-containing protein
1445	 63.18	0	1488591..1489853	-	420	114799943	-	HNE_1465	-	TetR family transcriptional regulator
1446	 60.76	0	1490094..1492463	+	789	114798936	-	HNE_1466	-	putative TonB dependent receptor
1447	 61.52	0	1492582..1493844	+	420	114798594	-	HNE_1467	-	beta-lactamase
1448	 64.06	0	1494075..1494995	+	306	114799401	-	HNE_1468	-	LysR family transcriptional regulator
1449	 58.12	-1	1495006..1495707	-	233	114798151	-	HNE_1469	-	cyclic nucleotide-binding protein
1450	 59.56	0	1495892..1498114	+	740	114797811	-	HNE_1470	-	putative TonB dependent receptor
1451	 62.10	0	1498175..1499554	+	459	114797255	-	HNE_1471	-	hypothetical protein
1452	 55.99	-1	1499592..1499900	+	102	114800049	-	HNE_1472	-	hypothetical protein
62.10	MEAN

3.66	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.