IslandPathversion 1.0

IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.10 STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1291	 64.78	0	1339492..1340919	+	475	114797185	-	HNE_1307	-	sensor histidine kinase
1292	 67.84	+1	1340997..1341509	+	170	114799426	-	HNE_1308	-	TPR repeat-containing protein
1293	 64.79	0	1341563..1341988	+	141	114797067	ccmE	HNE_1309	-	cytochrome c-type biogenesis protein CcmE
1294	 66.25	+1	1341985..1343892	+	635	114797201	ccmF	HNE_1310	-	cytochrome c-type biogenesis protein CcmF
1295	 64.80	0	1343867..1345420	-	517	114799948	-	HNE_1311	-	sensor histidine kinase
1296	 62.99	0	1345454..1346161	-	235	114797880	-	HNE_1312	-	DNA-binding response regulator
1297	 63.35	0	1346194..1347732	-	512	114798730	-	HNE_1313	-	Do family protease
1298	 66.67	+1	1347886..1348284	-	132	114799452	-	HNE_1314	-	putative cytochrome c-type biogenesis protein CycL
1299	 59.95	0	1348338..1348769	-	143	114800208	-	HNE_1315	-	hypothetical protein
1300	 63.80	0	1348880..1351639	+	919	114797463	glnE	HNE_1316	-	glutamate ammonia ligase adenylyl-transferase
1301	 59.33	0	1351685..1352284	+	199	114798175	-	HNE_1317	-	EF hand domain-containing protein
1302	 63.74	0	1352385..1352930	+	181	114797400	-	HNE_1318	-	ECF subfamily RNA polymerase sigma factor
1303	 67.54	+1	1352927..1353382	+	151	114797919	-	HNE_1319	-	hypothetical protein
1304	 66.86	+1	1353379..1353900	+	173	114799779	-	HNE_1320	-	hypothetical protein
1305	 59.54	0	1353897..1354331	-	144	114799005	-	HNE_1321	-	hypothetical protein
1306	 66.53	+1	1354295..1355743	-	482	114798308	-	HNE_1322	-	6-aminohexanoate-cyclic-dimer hydrolase
1307	 58.88	0	1355984..1357357	+	457	114800254	-	HNE_1323	-	TrkH family potassium uptake protein
1308	 59.75	0	1357387..1357791	-	134	114799385	-	HNE_1324	-	hypothetical protein
1309	 61.37	0	1357788..1358108	-	106	114800163	-	HNE_1325	-	hypothetical protein
1310	 62.14	0	1358128..1360290	-	720	114799394	mutB	HNE_1326	-	methylmalonyl-CoA mutase
1311	 66.77	+1	1360287..1362206	-	639	114798788	mutA	HNE_1327	-	methylmalonyl-CoA mutase, small subunit
1312	 62.75	0	1362407..1362661	+	84	114799449	-	HNE_1328	-	hypothetical protein
1313	 61.66	0	1362968..1363966	+	332	114797358	-	HNE_1329	-	2-nitropropane dioxygenase family oxidoreductase
1314	 67.40	+1	1364260..1364667	+	135	114800050	-	HNE_1330	-	hypothetical protein
1315	 68.40	+1	1364664..1365125	+	153	114798831	-	HNE_1331	-	hypothetical protein
1316	 62.37	0	1365251..1366042	-	263	114798034	map2	HNE_1332	-	methionine aminopeptidase, type I
1317	 64.32	0	1366039..1366251	-	70	114797710	-	HNE_1333	-	hypothetical protein
1318	 65.57	0	1366391..1367755	+	454	114800494	-	HNE_1334	-	amidase family protein
1319	 68.62	+1	1367752..1369233	+	493	114799418	glpK	HNE_1335	-	glycerol kinase
1320	 59.30	0	1369307..1371328	-	673	114800155	-	HNE_1336	-	S9 family peptidase
1321	 59.53	0	1371644..1374640	+	998	114799350	-	HNE_1337	-	TonB-dependent receptor
1322	 66.82	+1	1374767..1376086	+	439	114798685	-	HNE_1338	-	amino acid permease family protein
1323	 63.60	0	1376170..1376397	+	75	114797504	-	HNE_1339	-	hypothetical protein
1324	 61.42	0	1376397..1376720	+	107	114800091	-	HNE_1340	-	hypothetical protein
1325	 64.67	0	1377007..1377156	+	49	114799109	-	HNE_1342	-	hypothetical protein
1326	 67.07	+1	1377163..1378389	+	408	114798086	-	HNE_1343	-	cytochrome P450 family protein
1327	 66.74	+1	1378444..1379724	+	426	114797160	murA	HNE_1344	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1328	 63.79	0	1379819..1380304	+	161	114797987	-	HNE_1345	-	hypothetical protein
1329	 68.44	+1	1380402..1381700	+	432	114797246	hisD	HNE_1346	-	histidinol dehydrogenase
1330	 64.01	0	1381705..1382193	+	162	114800489	-	HNE_1347	-	hypothetical protein
1331	 64.27	0	1382160..1383161	-	333	114797756	-	HNE_1348	-	hypothetical protein
1332	 64.91	0	1383258..1384166	+	302	114800127	-	HNE_1349	-	LysR family transcriptional regulator
1333	 62.06	0	1384163..1384987	-	274	114797395	-	HNE_1350	-	fatty acid desaturase family protein
1334	 62.50	0	1385023..1385238	-	71	114797523	-	HNE_1351	-	hypothetical protein
1335	 65.20	0	1385302..1386189	-	295	114798502	-	HNE_1352	-	putative DNA-binding protein
1336	 63.09	0	1386300..1387472	+	390	114799556	-	HNE_1353	-	acyltransferase family protein
1337	 54.34	-2	1387584..1387802	+	72	114800246	infA	HNE_1354	-	translation initiation factor IF-1
1338	 69.44	+2	1387808..1388383	+	191	114797086	maf	HNE_1355	-	maf protein
1339	 59.58	0	1388510..1389271	+	253	114798653	-	HNE_1356	-	hypothetical protein
1340	 66.09	+1	1389359..1389706	-	115	114797234	-	HNE_1357	-	hypothetical protein
1341	 65.74	0	1389720..1390256	-	178	114797984	-	HNE_1358	-	ECF subfamily RNA polymerase sigma factor
1342	 58.67	0	1390564..1390713	+	49	114800493	-	HNE_1359	-	hypothetical protein
1343	 60.64	0	1390847..1391560	+	237	114797931	-	HNE_1360	-	hypothetical protein
1344	 60.69	0	1391624..1391941	+	105	114797207	-	HNE_1361	-	putative lipoprotein
1345	 58.33	-1	1392063..1392338	+	91	114797616	-	HNE_1362	-	hypothetical protein
1346	 70.80	+2	1392447..1392833	+	128	114799093	-	HNE_1363	-	hypothetical protein
1347	 65.92	+1	1393000..1394346	+	448	114800402	pmbA	HNE_1364	-	pmbA protein
1348	 64.11	0	1394375..1395469	+	364	114799663	-	HNE_1365	-	inositol monophosphatase family protein
1349	 63.82	0	1395420..1397246	+	608	114797958	-	HNE_1366	-	efflux ABC transporter, permease/ATP-binding protein
1350	 65.02	0	1397251..1397916	-	221	114797219	-	HNE_1367	-	putative frnE protein
1351	 66.58	+1	1397975..1399102	-	375	114799354	ubiA	HNE_1368	-	4-hydroxybenzoate polyprenyl transferase
1352	 68.87	+1	1399220..1399990	+	256	114800139	-	HNE_1369	-	hypothetical protein
1353	 63.06	0	1400058..1401248	-	396	114797331	-	HNE_1370	-	major facilitator family transporter
1354	 62.22	0	1401263..1402297	-	344	114798006	-	HNE_1371	-	dimethylsulfoxide reductase chain B
1355	 62.68	0	1402384..1403286	+	300	114799792	-	HNE_1372	-	LysR family transcriptional regulator
1356	 61.58	0	1403307..1403837	-	176	114800381	-	HNE_1373	-	riboflavin biosynthesis protein RibD domain-containing protein
1357	 63.76	0	1404174..1405550	+	458	114797614	-	HNE_1374	-	glutamate--cysteine ligase
1358	 62.07	0	1405589..1406263	+	224	114798387	-	HNE_1375	-	hypothetical protein
1359	 61.58	0	1406411..1408435	+	674	114800217	-	HNE_1376	-	proton/peptide symporter family protein
1360	 61.62	0	1408518..1409804	-	428	114797476	-	HNE_1377	-	small conductance mechanosensitive ion channel (MscS) family protein
1361	 64.80	0	1409910..1410446	-	178	114798241	-	HNE_1378	-	RNA pseudouridine synthase family protein
1362	 62.75	0	1410647..1411003	+	118	114799018	panD	HNE_1379	-	aspartate alpha-decarboxylase
1363	 58.66	0	1411034..1411495	-	153	114798946	-	HNE_1380	-	MerR family transcriptional regulator
1364	 57.11	-1	1411500..1412294	+	264	114799712	-	HNE_1381	-	hypothetical protein
1365	 64.78	0	1412331..1413335	-	334	114798770	-	HNE_1382	-	luciferase family monooxygenase
1366	 65.71	0	1413457..1414503	-	348	114799553	-	HNE_1383	-	hypothetical protein
1367	 63.66	0	1414500..1415429	-	309	114797621	lgt	HNE_1384	-	prolipoprotein diacylglyceryl transferase
1368	 64.31	0	1415537..1415791	+	84	114798170	-	HNE_1385	-	hypothetical protein
1369	 62.30	0	1415903..1416406	+	167	114798921	-	HNE_1386	-	hypothetical protein
1370	 67.29	+1	1416416..1417222	+	268	114799869	proC	HNE_1387	-	pyrroline-5-carboxylate reductase
1371	 63.64	0	1417243..1417869	+	208	114797672	-	HNE_1388	-	hypothetical protein
1372	 61.36	0	1417866..1418957	+	363	114799215	-	HNE_1389	-	hypothetical protein
1373	 60.78	0	1419207..1419512	+	101	114798007	-	HNE_1390	-	hypothetical protein
1374	 69.21	+1	1419609..1420277	+	222	114800453	-	HNE_1391	-	hypothetical protein
1375	 69.07	+1	1420274..1421230	+	318	114799668	-	HNE_1392	-	putative flagellar motor switch protein FliG
1376	 66.43	+1	1421230..1421643	+	137	114798466	-	HNE_1393	-	hypothetical protein
1377	 61.48	0	1421640..1421909	+	89	114797692	fliN	HNE_1394	-	flagellar motor switch protein FliN
1378	 59.75	0	1421958..1422839	+	293	114798396	phhA	HNE_1395	-	phenylalanine 4-monooxygenase
1379	 60.42	0	1422836..1423459	-	207	114797549	pth	HNE_1396	-	peptidyl-tRNA hydrolase
1380	 61.06	0	1423542..1424201	-	219	114797515	-	HNE_1397	-	ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
1381	 65.37	0	1424368..1425291	-	307	114798544	-	HNE_1398	-	beta-lactamase
1382	 63.54	0	1425405..1426397	-	330	114799486	-	HNE_1399	-	amidohydrolase family protein
1383	 59.14	0	1426597..1426875	+	92	114800479	-	HNE_1400	-	hypothetical protein
1384	 63.97	0	1426885..1428666	+	593	114797134	-	HNE_1401	-	solute/sodium symporter (SSS) family protein
1385	 61.68	0	1428780..1430726	+	648	114798116	acsA	HNE_1402	-	acetate--CoA ligase
1386	 65.13	0	1430821..1431798	+	325	114797096	-	HNE_1403	-	glycosyl transferase, group 2 family protein
1387	 64.28	0	1431795..1433429	-	544	114798077	chvG	HNE_1404	-	sensor histidine kinase ChvG
1388	 60.65	0	1433429..1433893	-	154	114798998	-	HNE_1405	-	putative peptidyl-prolyl cis-trans isomerase, cyclophilin-type
1389	 66.46	+1	1434011..1434484	+	157	114797907	-	HNE_1406	-	hypothetical protein
1390	 66.17	+1	1434481..1435080	-	199	114798655	-	HNE_1407	-	hypothetical protein
62.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.