IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.10   STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
72	 62.16	0	57668..58975	+	435	114800187	-	HNE_0072	-	putative transporter
73	 60.29	0	58991..59617	-	208	114799970	hisB	HNE_0073	-	imidazoleglycerol-phosphate dehydratase
74	 63.03	0	59697..61481	+	594	114799436	-	HNE_0074	-	putative diguanylate cyclase
75	 63.39	0	61463..61981	-	172	114798620	-	HNE_0075	-	putative acetyltransferase
76	 61.38	0	61978..62412	-	144	114800214	-	HNE_0076	-	hypothetical protein
77	 62.00	0	62417..62845	-	142	114797338	-	HNE_0077	-	hypothetical protein
78	 63.92	0	62935..63990	-	351	114798208	mclA	HNE_0078	-	malyl-CoA lyase
79	 56.22	-1	64086..64286	+	66	114797180	-	HNE_0079	-	hypothetical protein
80	 64.41	0	64291..65220	-	309	114797932	xerD	HNE_0080	-	tyrosine recombinase XerD
81	 62.03	0	65507..66067	+	186	114800012	aroK	HNE_0081	-	shikimate kinase
82	 64.17	0	66064..67185	+	373	114797725	aroB	HNE_0082	-	3-dehydroquinate synthase
83	 61.33	0	67214..68488	+	424	114798726	-	HNE_0083	-	CBS/transporter associated domain-containing protein
84	 60.99	0	68495..68776	-	93	114799844	-	HNE_0084	-	BolA family protein
85	 66.51	+1	68808..69431	+	207	114797765	-	HNE_0085	-	DnaJ domain-containing protein
86	 59.57	0	69846..70310	+	154	114798718	-	HNE_0086	-	spore coat family protein
87	 63.14	0	70322..71002	+	226	114799312	-	HNE_0087	-	hypothetical protein
88	 63.69	0	71056..73308	+	750	114800318	-	HNE_0088	-	fimbrial usher protein
89	 59.48	0	73309..73767	+	152	114797879	-	HNE_0089	-	putative lipoprotein
90	 62.32	0	73871..74860	+	329	114798702	-	HNE_0090	-	putative NADH-quinone oxidoreductase
91	 64.34	0	74864..75721	-	285	114799349	-	HNE_0091	-	putative undecaprenol kinase
92	 61.96	0	75961..77406	+	481	114800319	gltD	HNE_0092	-	putative oxidoreductase
93	 61.05	0	77412..81953	+	1513	114798288	gltB	HNE_0093	-	glutamate synthase, large subunit
94	 61.15	0	82002..82889	-	295	114798674	-	HNE_0094	-	putative lipoprotein
95	 58.33	-1	83174..84337	+	387	114799939	-	HNE_0095	-	aminotransferase, classes I and II
96	 60.85	0	84385..85932	-	515	114797697	-	HNE_0096	-	carboxyl transferase domain-containing protein
97	 58.82	0	86041..86346	+	101	114797960	-	HNE_0097	-	SCP-2 sterol transfer family protein
98	 60.17	0	86433..87386	+	317	114799139	-	HNE_0098	-	alpha/beta fold family hydrolase
99	 60.77	0	87421..88878	+	485	114797267	baiB	HNE_0099	-	bile acid-coenzyme A ligase
100	 62.09	0	88934..89938	+	334	114797977	-	HNE_0100	-	alcohol dehydrogenase, class III
101	 58.20	-1	89975..91498	-	507	114798776	-	HNE_0101	-	amino acid carrier protein
102	 59.35	0	91544..91666	-	40	114799575	-	HNE_0102	-	hypothetical protein
103	 61.11	0	91688..93037	+	449	114799640	-	HNE_0103	-	tRNA-i(6)A37 thiotransferase enzyme MiaB
104	 62.33	0	93076..94020	+	314	114800486	-	HNE_0104	-	PhoH family protein
105	 55.19	-1	94031..94483	+	150	114798379	-	HNE_0105	-	hypothetical protein
106	 61.44	0	94489..95349	+	286	114798310	-	HNE_0106	-	CBS/transporter associated domain-containing protein
107	 61.44	0	95356..96999	+	547	114800455	lnt	HNE_0107	-	apolipoprotein N-acyltransferase
108	 57.53	-1	97041..97478	+	145	114799525	-	HNE_0108	-	DNA-binding protein
109	 61.36	0	97510..98169	+	219	114798099	trmB	HNE_0109	-	tRNA (guanine-N(7))-methyltransferase
110	 52.38	-2	98355..98564	+	69	114797127	-	HNE_0110	-	cold shock DNA-binding protein
111	 61.83	0	98773..99372	+	199	114800120	-	HNE_0111	-	hypothetical protein
112	 61.10	0	99369..101147	+	592	114799070	nusA	HNE_0112	-	transcription termination factor NusA
113	 61.57	0	101122..101808	+	228	114798650	-	HNE_0113	-	hypothetical protein
114	 62.72	0	101864..104425	+	853	114797688	infB	HNE_0114	-	translation initiation factor IF-2
115	 62.75	0	104435..104842	+	135	114799473	rbfA	HNE_0115	-	ribosome-binding factor A
116	 62.01	0	105005..105562	+	185	114800142	-	HNE_0116	-	hypothetical protein
117	 64.54	0	105695..106636	+	313	114799976	truB	HNE_0117	-	tRNA pseudouridine synthase B
118	 66.67	+1	106637..106873	-	78	114797236	-	HNE_0118	-	hypothetical protein
119	 61.86	0	107521..108228	-	235	114797682	-	HNE_0119	-	putative lipoprotein
120	 62.28	0	108400..108900	+	166	114800218	msrB1	HNE_0120	-	methionine-R-sulfoxide reductase
121	 67.94	+1	108966..109358	-	130	114798277	-	HNE_0121	-	hypothetical protein
122	 61.90	0	109355..109690	-	111	114797689	-	HNE_0122	-	hypothetical protein
123	 64.47	0	109703..110338	-	211	114797302	-	HNE_0123	-	hypothetical protein
124	 69.89	+2	110388..110759	-	123	114798871	-	HNE_0124	-	hypothetical protein
125	 61.94	0	110804..111586	-	260	114797825	bdhA	HNE_0125	-	3-hydroxybutyrate dehydrogenase
126	 61.38	0	111682..112116	+	144	114800450	-	HNE_0126	-	hypothetical protein
127	 66.24	+1	112243..112947	+	234	114799432	-	HNE_0127	-	hypothetical protein
128	 66.67	+1	112944..113813	+	289	114799810	pyrF	HNE_0128	-	orotidine 5'-phosphate decarboxylase
129	 63.93	0	113966..116119	+	717	114797244	adhA	HNE_0129	-	alcohol dehydrogenase (acceptor)
130	 65.00	0	116258..116797	+	179	114798229	-	HNE_0130	-	hypothetical protein
131	 59.39	0	116868..117692	+	274	114797508	-	HNE_0131	-	hypothetical protein
132	 62.34	0	117676..118368	-	230	114800131	-	HNE_0132	-	glutathione S-transferase
133	 65.99	+1	118365..118661	-	98	114797485	-	HNE_0133	-	hypothetical protein
134	 56.92	-1	118811..119518	+	235	114798071	-	HNE_0134	-	TetR family transcriptional regulator
135	 64.67	0	119583..119732	+	49	114799071	-	HNE_0135	-	hypothetical protein
136	 68.49	+1	119883..120980	-	365	114797789	gcp	HNE_0136	-	O-sialoglycoprotein endopeptidase
137	 68.02	+1	121016..121756	-	246	114798778	-	HNE_0137	-	YceI family protein
138	 58.80	0	122241..122672	+	143	114799309	-	HNE_0138	-	hypothetical protein
139	 61.43	0	122692..124506	-	604	114800355	lepA	HNE_0139	-	GTP-binding protein LepA
140	 60.80	0	124623..125474	+	283	114797303	-	HNE_0140	-	hypothetical protein
141	 62.58	0	125443..126273	+	276	114798287	-	HNE_0141	-	hypothetical protein
142	 64.58	0	126362..126937	+	191	114800011	-	HNE_0142	-	putative lipoprotein
143	 61.93	0	126950..128047	+	365	114798450	-	HNE_0143	-	Rieske 2Fe-2S family protein
144	 61.20	0	128185..128769	+	194	114797636	-	HNE_0144	-	fasciclin domain-containing protein
145	 67.26	+1	128909..129412	+	167	114799962	ruvC	HNE_0145	-	crossover junction endodeoxyribonuclease RuvC
146	 65.38	0	129409..130032	+	207	114798884	ruvA	HNE_0146	-	Holliday junction DNA helicase RuvA
147	 66.47	+1	130029..131063	+	344	114800414	ruvB	HNE_0147	-	Holliday junction DNA helicase B
148	 68.42	+1	131064..131462	-	132	114799614	-	HNE_0148	-	hypothetical protein
149	 62.83	0	131539..132684	+	381	114797615	-	HNE_0149	-	hypothetical protein
150	 58.99	0	132681..133136	+	151	114797377	-	HNE_0150	-	thioesterase family protein
151	 62.73	0	133454..134164	+	236	114799599	tolQ	HNE_0151	-	protein TolQ
152	 62.89	0	134177..134626	+	149	114799773	-	HNE_0152	-	ExbD/TolR family transport energizing protein
153	 62.66	0	134652..135575	+	307	114798960	-	HNE_0153	-	hypothetical protein
154	 63.05	0	135616..136971	+	451	114798605	tolB	HNE_0154	-	tolB protein
155	 61.88	0	137204..137746	+	180	114797840	-	HNE_0155	-	ompA family protein
156	 66.25	+1	137861..138817	+	318	114800143	-	HNE_0156	-	hypothetical protein
157	 65.49	0	138805..139908	+	367	114799417	tilS	HNE_0157	-	tRNA(Ile)-lysidine synthetase
158	 61.25	0	139957..141876	+	639	114797326	ftsH	HNE_0158	-	ATP-dependent metalloprotease FtsH
159	 61.80	0	141950..142606	+	218	114800066	-	HNE_0159	-	hypothetical protein
160	 61.21	0	142647..142976	+	109	114797110	-	HNE_0160	-	hypothetical protein
161	 59.82	0	143079..143837	+	252	114799876	-	HNE_0161	-	hypothetical protein
162	 60.54	0	143838..145013	-	391	114798254	-	HNE_0162	-	L-carnitine dehydratase
163	 63.17	0	145081..146508	-	475	114797399	-	HNE_0163	-	hypothetical protein
164	 57.60	-1	146696..149584	+	962	114799790	-	HNE_0164	-	TonB-dependent receptor
165	 59.34	0	149724..152084	-	786	114798938	-	HNE_0165	-	tonB dependent receptor
166	 59.35	0	152262..153218	-	318	114798639	-	HNE_0166	-	GDXG family lipase
167	 59.76	0	153300..155153	-	617	114797895	fcs1	HNE_0167	-	acyl-CoA synthetase
168	 59.93	0	155246..156595	-	449	114800209	glmM	HNE_0168	-	phosphoglucosamine mutase
169	 61.34	0	156619..157407	-	262	114799459	cysQ	HNE_0169	-	3'(2'),5'-bisphosphate nucleotidase
170	 57.30	-1	157423..158319	-	298	114797197	-	HNE_0170	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
171	 60.80	0	158401..159627	-	408	114797934	ilvA	HNE_0171	-	threonine dehydratase
62.10	MEAN

3.66	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.