IslandPath Analysis: Helicobacter pylori G27



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.14   STD DEV: 3.74
Helicobacter pylori G27, complete genome - 1..1652982
1493 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
855	 37.75	0	956884..957426	+	180	208434831	-	HPG27_877	-	GTP cyclohydrolase I
856	 37.17	0	957442..958353	+	303	208434832	-	HPG27_878	-	geranyltrans transferase
857	 41.79	0	958350..959153	+	267	208434833	-	HPG27_879	-	stationary-phase survival protein
858	 40.45	0	959150..959809	+	219	208434834	-	HPG27_880	-	hypothetical protein
859	 39.14	0	959813..960415	+	200	208434835	-	HPG27_881	-	hypothetical protein
860	 36.77	0	960412..961167	+	251	208434836	-	HPG27_882	-	hypothetical protein
861	 41.98	0	961178..961663	+	161	208434837	-	HPG27_883	-	hypothetical protein
862	 33.33	-1	961753..961995	+	80	208434838	-	HPG27_884	-	putative outer membrane protein
863	 39.30	0	962157..963497	-	446	208434839	-	HPG27_885	-	proline and betaine transporter
864	 31.84	-1	963787..964053	-	88	208434840	-	HPG27_886	-	hypothetical protein
865	 33.92	-1	964118..965488	-	456	208434841	-	HPG27_887	-	hypothetical protein
866	 41.74	0	965552..966241	-	229	208434842	-	HPG27_888	-	amino acid ABC transporter, permease protein
867	 40.03	0	966249..967025	-	258	208434843	-	HPG27_889	-	amino acid ABC transporter, periplasmic binding protein
868	 39.68	0	967096..968229	-	377	208434844	-	HPG27_890	-	alanine racemase, biosynthetic
869	 43.39	+1	968236..969588	-	450	208434845	-	HPG27_891	-	D-alanine glycine permease
870	 40.55	0	969629..970861	-	410	208434846	-	HPG27_892	-	D-amino acid dehydrogenase
871	 40.48	0	970884..971261	-	125	208434847	-	HPG27_893	-	translation initiation inhibitor
872	 41.42	0	972241..973674	+	477	208434848	-	HPG27_894	-	hypothetical protein
873	 38.57	0	974001..974363	+	120	208434849	-	HPG27_895	-	hypothetical protein
874	 35.80	0	976591..977604	-	337	208434850	-	HPG27_896	-	hypothetical protein
875	 36.84	0	977614..978069	-	151	208434851	-	HPG27_897	-	conserved hypothetical secreted protein
876	 42.87	0	978080..978949	-	289	208434852	-	HPG27_898	-	acetyl-CoA carboxylase beta subunit
877	 38.37	0	979030..979644	+	204	208434853	-	HPG27_899	-	hypothetical protein
878	 39.42	0	979655..980311	+	218	208434854	-	HPG27_900	-	hypothetical protein
879	 39.51	0	980314..980880	-	188	208434855	-	HPG27_901	-	hypothetical protein
880	 39.65	0	980945..981577	-	210	208434856	-	HPG27_902	-	oxygen-insensitive NADPH nitroreductase
881	 39.88	0	981574..982428	-	284	208434857	-	HPG27_903	-	prolipoprotein diacylglyceryl transferase
882	 38.27	0	982438..983166	-	242	208434858	-	HPG27_904	-	ribosomal large subunit pseudouridine synthase C
883	 38.92	0	983178..984359	-	393	208434859	-	HPG27_905	-	3-deoxy-D-manno-octulosonic-acid transferase
884	 36.52	0	984360..985112	-	250	208434860	-	HPG27_906	-	hypothetical protein
885	 38.80	0	985122..985853	-	243	208434861	-	HPG27_907	-	hypothetical protein
886	 42.36	0	985855..986751	-	298	208434862	-	HPG27_908	-	glycyl-tRNA synthetase, alpha subunit
887	 44.21	+1	986765..987739	-	324	208434863	-	HPG27_909	-	glycerol-3-phosphate dehydrogenase, NAD(P)+ dependent
888	 37.80	0	988097..989620	-	507	208434864	-	HPG27_910	-	hypothetical protein
889	 36.63	0	989692..990177	-	161	208434865	-	HPG27_911	-	hypothetical protein
890	 40.16	0	992039..993736	-	565	208434866	-	HPG27_912	-	hypothetical protein
891	 36.84	0	993733..995214	-	493	208434867	-	HPG27_913	-	hypothetical protein
892	 37.91	0	995262..995414	-	50	208434868	-	HPG27_914	-	hypothetical protein
893	 34.75	-1	995870..996151	-	93	208434869	-	HPG27_915	-	hypothetical protein
894	 41.67	0	996162..999221	-	1019	208434870	-	HPG27_916	-	cobalt-zinc-cadmium resistance protein
895	 40.28	0	999221..1000300	-	359	208434871	-	HPG27_917	-	cobalt-zinc-cadmium resistance protein
896	 39.23	0	1000297..1001550	-	417	208434872	-	HPG27_918	-	hypothetical protein
897	 37.32	0	1001582..1003687	-	701	208434873	-	HPG27_919	-	glycyl-tRNA synthetase, beta subunit
898	 40.60	0	1003800..1004858	+	352	208434874	-	HPG27_920	-	hypothetical protein
899	 41.67	0	1004871..1006346	+	491	208434875	-	HPG27_921	-	phosphoglycerate mutase
900	 39.72	0	1006361..1006642	+	93	208434876	-	HPG27_922	-	Glu-tRNA amido transferase, subunit C
901	 39.44	0	1006761..1008071	-	436	208434877	-	HPG27_923	-	adenosyl methionine-8-amino-7-oxononanoate aminotransferase
902	 37.15	0	1008147..1009664	+	505	208434878	-	HPG27_924	-	peptidyl-prolylcis-transisomerase D
903	 42.08	0	1009665..1011161	+	498	208434879	ftsA	HPG27_925	-	cell division protein
904	 43.87	+1	1011292..1012449	+	385	208434880	ftsZ	HPG27_926	-	cell division protein
905	 40.00	0	1012854..1013018	+	54	208434881	-	HPG27_927	-	hypothetical protein
906	 33.78	-1	1013312..1013536	-	74	208434882	-	HPG27_928	-	hypothetical protein
907	 40.74	0	1013613..1013909	+	98	208434883	-	HPG27_929	-	hypothetical protein
908	 42.12	0	1013920..1014192	+	90	208434884	-	HPG27_930	-	exonuclease VII, large subunit
909	 36.74	0	1014666..1015193	+	175	208434885	-	HPG27_931	-	hypothetical protein
910	 37.90	0	1015806..1016024	+	72	208434886	-	HPG27_932	-	hypothetical protein
911	 38.79	0	1016096..1016920	+	274	208434887	-	HPG27_933	-	hypothetical protein
912	 29.01	-2	1017000..1017161	+	53	208434888	-	HPG27_934	-	hypothetical protein
913	 34.26	-1	1017207..1017422	+	71	208434889	-	HPG27_935	-	hypothetical protein
914	 31.21	-2	1017686..1018438	-	250	208434890	-	HPG27_936	-	hypothetical protein
915	 36.90	0	1018435..1018686	-	83	208434891	-	HPG27_937	-	hypothetical protein
916	 29.90	-2	1018712..1018915	-	67	208434892	-	HPG27_938	-	hypothetical protein
917	 36.08	0	1018917..1019171	-	84	208434893	-	HPG27_939	-	hypothetical protein
918	 34.35	-1	1019238..1019531	-	97	208434894	-	HPG27_940	-	hypothetical protein
919	 33.60	-1	1019536..1021785	-	749	208434895	-	HPG27_941	-	hypothetical protein
920	 34.16	-1	1021790..1022392	-	200	208434896	-	HPG27_942	-	protein kinase C-like protein
921	 35.28	-1	1022451..1023068	-	205	208434897	-	HPG27_943	-	protein phosphatase 2 C-like protein (ptc1)
922	 34.25	-1	1023065..1023391	-	108	208434898	-	HPG27_944	-	hypothetical protein
923	 37.86	0	1023479..1024030	-	183	208434899	-	HPG27_945	-	phage/colicin/tellurite resistance cluster Y protein
924	 24.04	-2	1028206..1028388	-	60	208434900	-	HPG27_946	-	hypothetical protein
925	 36.48	0	1028819..1030564	+	581	208434901	-	HPG27_947	-	hypothetical protein
926	 35.89	0	1030605..1031858	+	417	208434902	-	HPG27_948	-	hypothetical protein
927	 36.83	0	1031902..1033761	+	619	208434903	-	HPG27_949	-	hypothetical protein
928	 39.51	0	1033868..1034806	+	312	208434904	-	HPG27_950	-	hypothetical protein
929	 40.85	0	1034915..1036762	-	615	208434905	-	HPG27_951	-	arginine decarboxylase
930	 37.69	0	1036777..1037946	-	389	208434906	-	HPG27_952	-	type 1 capsular polysaccharide biosynthesis protein J
931	 39.16	0	1037951..1038379	-	142	208434907	-	HPG27_953	-	hypothetical protein
932	 37.53	0	1038395..1039180	-	261	208434908	-	HPG27_954	-	S-adenosyl methionine-dependent methyltransferase
933	 35.91	0	1039184..1040191	-	335	208434909	-	HPG27_955	-	hypothetical protein
934	 38.81	0	1040192..1042144	-	650	208434910	-	HPG27_956	-	methionyl-tRNA synthetase
935	 42.05	0	1042313..1043482	+	389	208434911	-	HPG27_957	-	cyclopropane fatty acid synthase
936	 37.58	0	1043492..1045375	-	627	208434912	-	HPG27_958	-	hypothetical protein
937	 30.98	-2	1045764..1046528	+	254	208434913	-	HPG27_959	-	hypothetical protein
938	 29.34	-2	1046540..1048216	+	558	208434914	-	HPG27_960	-	hypothetical protein
939	 33.66	-1	1048432..1048734	+	100	208434915	-	HPG27_961	-	hypothetical protein
940	 27.20	-2	1048735..1048995	+	86	208434916	-	HPG27_962	-	hypothetical protein
941	 31.29	-2	1051623..1053434	+	603	208434917	-	HPG27_964	-	DNA topoisomerase I
942	 32.52	-1	1053564..1054550	+	328	208434918	comB8-2	HPG27_965	-	competence protein
943	 35.02	-1	1054550..1056091	+	513	208434919	-	HPG27_966	-	comB9-like competence protein
944	 34.79	-1	1056088..1057323	+	411	208434920	comB10-2	HPG27_967	-	competence protein
945	 33.00	-1	1057393..1057689	+	98	208434921	-	HPG27_968	-	hypothetical protein
946	 25.09	-2	1057939..1058205	+	88	208434922	-	HPG27_969	-	hypothetical protein
947	 31.95	-1	1058237..1059178	+	313	208434923	-	HPG27_970	-	type IV secretion system ATPase (virB11-like)
948	 30.92	-2	1059175..1059630	+	151	208434924	-	HPG27_971	-	hypothetical protein
949	 25.09	-2	1059627..1059917	+	96	208434925	-	HPG27_972	-	hypothetical protein
950	 27.96	-2	1059918..1060475	+	185	208434926	-	HPG27_973	-	hypothetical protein
951	 33.68	-1	1060476..1062203	+	575	208434927	-	HPG27_974	-	cag island protein,DNA transfer protein (virD4-like)
952	 33.02	-1	1062740..1063054	-	104	208434928	-	HPG27_975	-	hypothetical protein
953	 29.98	-2	1063336..1065246	+	636	208434929	-	HPG27_976	-	hypothetical protein
954	 35.89	0	1065271..1066443	-	390	208434930	-	HPG27_977	-	hypothetical protein
39.14	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.