version 1.0
Helicobacter pylori G27, complete genome - 1..1652982 1493 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 462 38.21 0 509577..510908 + 443 208434438 - HPG27_475 - heatshock protein, ATP-bindingsubunit 463 37.53 0 510908..511813 + 301 208434439 - HPG27_476 - GTP-binding protein era-like protein 464 38.17 0 511810..512802 + 330 208434440 - HPG27_477 - conserved hypothetical secreted protein 465 36.17 0 512885..513766 - 293 208434441 - HPG27_478 - hypothetical protein 466 36.49 0 513910..514257 + 115 208434442 cag1 HPG27_479 - cag pathogenicity island protein 1 467 30.16 -2 514464..514715 + 83 208434443 - HPG27_480 - hypothetical protein 468 38.87 0 514715..516160 + 481 208434444 cag3 HPG27_481 - cag pathogenicity island protein 3 469 36.67 0 516165..516674 + 169 208434445 cag4 HPG27_482 - cag pathogenicity island protein 4 470 37.96 0 516793..519039 - 748 208434446 cag5 HPG27_483 - cag pathogenicity island protein 5 471 36.76 0 519048..520040 - 330 208434447 - HPG27_484 - virB11-like cag pathogenicity islandencoded protein / ATPase protein 472 33.33 -1 520045..520644 - 199 208434448 cagZ HPG27_485 - cag pathogenicity island protein Z 473 34.48 -1 526506..528071 - 521 208434449 cagX HPG27_487 - cag pathogenicity island protein X 474 36.50 0 528123..529730 - 535 208434450 cagW HPG27_488 - cag pathogenicity island protein W 475 34.52 -1 529735..530493 - 252 208434451 cagV HPG27_489 - cag pathogenicity island protein V 476 34.56 -1 530890..531540 + 216 208434452 cagU HPG27_490 - cag pathogenicity island protein U 477 37.01 0 531553..532395 + 280 208434453 cagT HPG27_491 - cag pathogenicity island protein T 478 33.67 -1 532592..533191 - 199 208434454 cagS HPG27_492 - cag pathogenicity island protein S 479 34.97 -1 535518..535823 - 101 208434455 cagQ HPG27_493 - cag pathogenicity island protein Q 480 33.89 -1 535835..536014 - 59 208434456 - HPG27_494 - hypothetical protein 481 34.31 -1 537100..538230 + 376 208434457 cagM HPG27_495 - cag pathogenicity island protein M 482 34.85 -1 538245..539165 + 306 208434458 cagN HPG27_496 - cag pathogenicity island protein N 483 35.01 -1 539247..539960 - 237 208434459 cagL HPG27_497 - cag pathogenicity island protein L 484 39.37 0 539957..541033 - 358 208434460 cagI HPG27_498 - cag pathogenicity island protein I 485 39.66 0 541113..542045 - 310 208434462 cagH HPG27_499 - cag pathogenicity island protein H 486 42.79 0 542044..542244 + 66 208434461 - HPG27_500 - hypothetical protein 487 35.20 -1 542241..542669 - 142 208434463 cagG HPG27_501 - cag pathogenicity island protein G 488 30.86 -2 542724..543530 - 268 208434464 cagF HPG27_502 - cag pathogenicity island protein F 489 36.38 0 543532..546483 - 983 208434465 cagE HPG27_503 - cag pathogenicity island protein E 490 31.73 -1 546492..547115 - 207 208434466 cagD HPG27_504 - cag pathogenicity island protein D 491 42.82 0 547117..547464 - 115 208434467 cagC HPG27_505 - cag pathogenicity island protein C 492 34.21 -1 547609..547836 - 75 208434468 cagB HPG27_506 - cag pathogenicity island protein B 493 38.18 0 548263..551955 + 1230 208434469 cagA HPG27_507 - cytotoxin-associated protein A 494 35.64 0 552282..552584 + 100 208434470 - HPG27_508 - hypothetical protein 495 40.10 0 552642..553409 - 255 208434471 - HPG27_509 - glutamate racemase 496 42.52 0 553446..554762 - 438 208434472 - HPG27_510 - transcription termination factor Rho 497 40.20 0 555028..555231 + 67 208434473 - HPG27_511 - ribosomal protein L31 498 38.66 0 556157..556813 + 218 208434474 - HPG27_513 - 23S rRNA methyltransferase 499 34.06 -1 556826..557791 + 321 208434475 - HPG27_514 - hypothetical protein 500 37.65 0 557869..558609 + 246 208434476 - HPG27_515 - hypothetical protein 501 36.53 0 558678..559115 - 145 208434477 - HPG27_516 - hypothetical protein 502 39.94 0 559583..560521 - 312 208434478 - HPG27_517 - acetyl-coenzyme A carboxylase 503 45.51 +1 560544..561758 - 404 208434479 - HPG27_518 - beta ketoacyl-acyl carrier protein synthase II 504 42.19 0 562089..562325 - 78 208434480 - HPG27_519 - acyl carrier protein 505 43.11 +1 562555..563301 - 248 208434481 - HPG27_520 - 3-ketoacyl-acyl carrier protein reductase 506 38.50 0 563340..563552 - 70 208434482 - HPG27_521 - ribosomal protein S21 507 38.45 0 563653..564903 - 416 208434483 - HPG27_522 - hypothetical protein 508 33.74 -1 565075..565320 + 81 208434484 - HPG27_523 - hypothetical protein 509 41.82 0 565343..565990 - 215 208434485 - HPG27_524 - hypothetical protein 510 38.58 0 566097..566915 - 272 208434486 - HPG27_525 - diaminopimelate epimerase 511 35.82 0 567031..568077 + 348 208434487 - HPG27_526 - membrane protein 512 37.34 0 568209..569081 - 290 208434488 - HPG27_527 - hypothetical protein 513 41.05 0 569120..570220 - 366 208434489 - HPG27_528 - GTP-binding protein 514 40.64 0 570222..571712 - 496 208434490 - HPG27_529 - amino peptidase a/I 515 41.45 0 571760..572338 - 192 208434491 - HPG27_530 - hypothetical protein 516 43.15 +1 572353..572892 - 179 208434492 - HPG27_531 - adenine phosphoribosyl transferase 517 37.54 0 572950..573282 - 110 208434493 - HPG27_532 - hypothetical protein 518 41.34 0 573327..573788 - 153 208434494 - HPG27_533 - ribose 5-phosphate isomerase 519 42.35 0 573809..574507 - 232 208434495 - HPG27_534 - hypothetical protein 520 39.40 0 574516..575388 - 290 208434496 lepB HPG27_535 - signal peptidase I 521 42.61 0 575388..576260 - 290 208434497 - HPG27_536 - methylene-tetra hydrofolate dehydrogenase 522 37.05 0 576339..578384 - 681 208434498 - HPG27_537 - hypothetical protein 523 35.14 -1 578390..578944 - 184 208434499 - HPG27_538 - hypothetical protein 524 38.81 0 578951..580027 - 358 208434500 - HPG27_539 - hypothetical protein 525 39.41 0 580045..581064 - 339 208434501 - HPG27_540 - dihydroorotase 526 37.12 0 582017..582913 - 298 208434502 - HPG27_542 - hypothetical protein 527 36.83 0 582910..583281 - 123 208434503 fliY-2 HPG27_543 - flagellar switch protein 528 40.49 0 583363..584019 - 218 208434504 - HPG27_544 - endonuclease III 529 39.83 0 584016..584246 - 76 208434505 - HPG27_545 - hypothetical protein 530 35.04 -1 584248..587181 - 977 208434506 - HPG27_546 - hypothetical protein 531 39.58 0 587225..588088 + 287 208434507 - HPG27_547 - amino deoxy chorismate lyase 532 45.03 +1 588273..588614 + 113 208434508 - HPG27_548 - 2-oxoglutarate oxidoreductase OorD subunit 533 44.50 +1 588614..589741 + 375 208434509 korA HPG27_549 - 2-oxoglutarate oxidoreductase OorA subunit 534 44.16 +1 589744..590565 + 273 208434510 korB HPG27_550 - 2-oxoglutarate oxidoreductase OorB subunit 535 42.42 0 590565..591125 + 186 208434511 korC HPG27_551 - 2-oxoglutarate oxidoreductase OorC subunit 536 37.55 0 591285..594227 + 980 208434512 - HPG27_552 - type IIIR-M system restriction enzyme 537 37.81 0 594224..596098 + 624 208434513 - HPG27_553 - type III R-M system modification enzyme 538 36.36 0 596206..596370 + 54 208434514 - HPG27_554 - hypothetical protein 539 40.19 0 596379..597851 + 490 208434515 - HPG27_555 - DsbB-like protein 540 38.03 0 598266..598904 + 212 208434516 - HPG27_556 - hypothetical protein 541 40.90 0 598907..600889 - 660 208434517 - HPG27_557 - penicillin-binding protein 1A 542 37.68 0 600890..602038 - 382 208434518 bioF HPG27_558 - 8-amino-7-oxononanoate synthase 543 38.71 0 602035..603336 - 433 208434519 - HPG27_559 - hemolysin secretion protein 544 31.01 -2 603408..604355 - 315 208434520 - HPG27_560 - multi drug resistance protein 545 31.19 -2 604396..605190 - 264 208434521 - HPG27_561 - hypothetical protein 546 44.03 +1 605351..606883 + 510 208434522 flaA HPG27_562 - flagellin A 547 34.55 -1 607011..607667 + 218 208434523 - HPG27_563 - 3-methyladenine DNA glycosylase 548 38.83 0 607664..608281 + 205 208434524 - HPG27_564 - hypothetical protein 549 41.18 0 608350..609369 + 339 208434525 - HPG27_565 - uroporphyrinogen decarboxylase 550 38.91 0 609379..610812 + 477 208434526 hefA HPG27_566 - outer-membrane protein of the hefABC efflux system 551 40.43 0 610822..611526 + 234 208434527 hefB HPG27_567 - membrane fusion protein of the hefABC efflux system 552 42.47 0 611539..614625 + 1028 208434528 hefC HPG27_568 - cytoplasmic pump protein of the hefABC efflux system 553 39.47 0 614622..615191 + 189 208434529 - HPG27_569 - hypothetical protein 554 39.29 0 615343..624921 + 3192 208434530 - HPG27_570 - putative vacuolating cytotoxin(VacA)-like protein 555 30.54 -2 624980..625480 - 166 208434531 - HPG27_571 - ABC transporter, permease 556 30.83 -2 625497..625736 - 79 208434532 - HPG27_572 - ABC transporter, permease 557 32.76 -1 625736..626437 - 233 208434533 - HPG27_573 - ABC transporter. ATP-binding protein 558 38.74 0 626748..627080 - 110 208434534 - HPG27_574 - hypothetical protein 559 38.95 0 627181..629157 - 658 208434535 ligA HPG27_575 - DNA ligase 560 38.85 0 629236..630177 + 313 208434536 cheV-1 HPG27_576 - chemotaxis protein 561 40.60 0 630212..631945 + 577 208434537 - HPG27_577 - aspartyl-tRNA synthetase 39.14 MEAN 3.74 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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