version 1.0
Helicobacter pylori Shi470, complete genome - 1..1608548 1569 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 914 40.33 0 934215..934943 - 242 188527726 - HPSH_04745 - hydrogenase expression/formation protein HypB 915 33.33 -1 934960..935064 - 34 188527727 - HPSH_04750 - hypothetical protein 916 38.67 0 935204..935503 - 99 188527728 - HPSH_04755 - hypothetical protein 917 41.87 0 935514..936719 - 401 188527729 - HPSH_04760 - acetate kinase 918 43.16 +1 936737..938293 - 518 188527730 - HPSH_04765 - phosphotransacetylase 919 41.41 0 938515..940074 + 519 188527731 - HPSH_04770 - hypothetical protein 920 40.82 0 940125..941099 + 324 188527732 flgD HPSH_04775 - flagellar basal body rod modification protein 921 42.96 +1 941096..942913 + 605 188527733 flgE HPSH_04780 - flagellar hook protein FlgE 922 31.60 -1 942972..943607 + 211 188527734 - HPSH_04785 - putative restriction endonuclease 923 36.21 0 943588..944736 + 382 188527735 - HPSH_04790 - type II DNA modification enzyme (methyltransferase) 924 40.13 0 944730..946760 + 676 188527736 - HPSH_04795 - rep helicase, single-stranded DNA-dependent ATPase 925 29.41 -2 947076..947177 + 33 188527737 - HPSH_04800 - hypothetical protein 926 44.87 +1 947287..948855 + 522 188527738 - HPSH_04805 - outer membrane protein HopC 927 43.07 +1 948877..950457 + 526 188527739 - HPSH_04810 - outer membrane protein HopB 928 40.28 0 950601..950672 - 23 188527740 - HPSH_04815 - hypothetical protein 929 42.10 0 952775..955216 - 813 188527741 - HPSH_04830 - iron-regulated outer membrane protein 930 42.36 0 955391..955822 - 143 188527742 - HPSH_04835 - hypothetical protein 931 41.80 0 955827..959084 - 1085 188527743 carB HPSH_04840 - carbamoyl phosphate synthase large subunit 932 39.83 0 959179..959871 - 230 188527744 - HPSH_04845 - hypothetical protein 933 41.67 0 960014..961009 + 331 188527745 - HPSH_04850 - glyceraldehyde-3-phosphate dehydrogenase 934 36.41 0 968318..969421 + 367 188527746 - HPSH_04865 - outer membrane protein (omp22) 935 37.68 0 969478..969684 - 68 188527747 - HPSH_04870 - 4-oxalocrotonate tautomerase 936 37.11 0 969830..970411 + 193 188527748 recR HPSH_04875 - recombination protein RecR 937 35.51 0 970408..971553 + 381 188527749 truD HPSH_04880 - tRNA pseudouridine synthase D 938 37.62 0 971540..972472 + 310 188527750 - HPSH_04885 - heat shock protein HtpX 939 37.75 0 972473..973015 + 180 188527751 folE HPSH_04890 - GTP cyclohydrolase I 940 37.72 0 973031..973942 + 303 188527752 - HPSH_04895 - geranyltranstransferase 941 40.55 0 973939..974742 + 267 188527753 surE HPSH_04900 - stationary phase survival protein SurE 942 41.21 0 974739..975398 + 219 188527754 - HPSH_04905 - hypothetical protein 943 38.31 0 975402..976004 + 200 188527755 - HPSH_04910 - hypothetical protein 944 35.85 0 976001..976756 + 251 188527756 - HPSH_04915 - hypothetical protein 945 42.59 0 976767..977252 + 161 188527757 - HPSH_04920 - hypothetical protein 946 38.52 0 977473..979458 + 661 188527758 - HPSH_04925 - putative outer membrane protein HomB 947 37.69 0 979596..980765 - 389 188527759 - HPSH_04930 - proline and betaine transporter 948 34.76 0 981198..981407 - 69 188527760 - HPSH_04935 - hypothetical protein 949 41.22 0 981475..982197 - 240 188527761 - HPSH_04940 - amino acid ABC transporter, permease protein 950 40.80 0 982172..982948 - 258 188527762 - HPSH_04945 - ABC-type polar amino acid transport,periplasmic component 951 26.98 -2 982945..983007 - 20 188527763 - HPSH_04950 - hypothetical protein 952 40.30 0 983017..984150 - 377 188527764 - HPSH_04955 - alanine racemase, biosynthetic (alr) 953 43.39 +1 984157..985509 - 450 188527765 - HPSH_04960 - D-alanine glycine permease 954 40.71 0 985550..986782 - 410 188527766 - HPSH_04965 - D-Amino acid dehydrogenase 955 40.48 0 986805..987182 - 125 188527767 - HPSH_04970 - hypothetical protein 956 43.43 +1 987594..987890 - 98 188527768 - HPSH_04975 - hypothetical protein 957 39.39 0 990240..990635 + 131 188527769 - HPSH_04990 - hypothetical protein 958 36.00 0 991213..992226 - 337 188527770 - HPSH_04995 - hypothetical protein 959 36.20 0 992236..992688 - 150 188527771 - HPSH_05000 - hypothetical protein 960 43.45 +1 992702..993571 - 289 188527772 - HPSH_05005 - acetyl-CoA carboxylase subunit beta 961 38.05 0 993652..994266 + 204 188527773 - HPSH_05010 - hypothetical protein 962 38.36 0 994277..994933 + 218 188527774 - HPSH_05015 - hypothetical protein 963 38.80 0 994936..995502 - 188 188527775 - HPSH_05020 - hypothetical protein 964 40.58 0 996196..997050 - 284 188527776 - HPSH_05035 - prolipoprotein diacylglyceryl transferase 965 37.72 0 997060..997788 - 242 188527777 - HPSH_05040 - hypothetical protein 966 38.07 0 997806..998987 - 393 188527778 - HPSH_05045 - 3-deoxy-D-manno-octulosonic-acid transferase 967 36.86 0 998988..999752 - 254 188527779 - HPSH_05050 - hypothetical protein 968 38.66 0 999762..1000493 - 243 188527780 - HPSH_05055 - hypothetical protein 969 41.81 0 1000495..1001391 - 298 188527781 glyQ HPSH_05060 - glycyl-tRNA synthetase subunit alpha 970 44.41 +1 1001405..1002343 - 312 188527782 gpsA HPSH_05065 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 971 34.00 -1 1002373..1002522 - 49 188527783 - HPSH_05070 - hypothetical protein 972 39.63 0 1003750..1006050 - 766 188527784 - HPSH_05085 - hypothetical protein 973 35.29 0 1007543..1007695 - 50 188527785 - HPSH_05105 - hypothetical protein 974 39.58 0 1007902..1008189 - 95 188527786 - HPSH_05110 - virulence associated protein D (vapD) 975 34.40 -1 1008257..1008538 - 93 188527787 - HPSH_05115 - hypothetical protein 976 41.73 0 1008549..1011608 - 1019 188527788 - HPSH_05120 - putative cation efflux system protein 977 38.89 0 1011608..1012687 - 359 188527789 - HPSH_05125 - cobalt-zinc-cadmium resistance protein 978 39.14 0 1012684..1014009 - 441 188527790 - HPSH_05130 - hypothetical protein 979 37.66 0 1013981..1016083 - 700 188527791 glyS HPSH_05135 - glycyl-tRNA synthetase subunit beta 980 40.26 0 1016195..1017262 + 355 188527792 - HPSH_05140 - hypothetical protein 981 41.46 0 1017275..1018750 + 491 188527793 - HPSH_05145 - phosphoglyceromutase 982 40.78 0 1018765..1019046 + 93 188527794 gatC HPSH_05150 - aspartyl/glutamyl-tRNA amidotransferase subunit C 983 40.27 0 1019119..1020429 - 436 188527795 - HPSH_05155 - adenosylmethionine--8-amino-7-oxononanoate transaminase 984 36.55 0 1020469..1022022 + 517 188527796 - HPSH_05160 - conserved hypothetical secreted protein 985 42.44 0 1022037..1023518 + 493 188527797 - HPSH_05165 - cell division protein 986 43.60 +1 1023653..1024801 + 382 188527798 - HPSH_05170 - cell division protein FtsZ 987 38.89 0 1024868..1024975 - 35 188527799 - HPSH_05175 - hypothetical protein 988 38.55 0 1026463..1027287 - 274 188527800 - HPSH_05200 - hypothetical protein 989 32.78 -1 1027300..1027479 - 59 188527801 - HPSH_05205 - hypothetical protein 990 40.50 0 1027745..1028107 - 120 188527802 xseA HPSH_05210 - exodeoxyribonuclease VII large subunit 991 37.04 0 1028113..1028193 - 26 188527803 - HPSH_05215 - hypothetical protein 992 31.16 -1 1028402..1029136 - 244 188527804 - HPSH_05220 - hypothetical protein 993 34.68 0 1029146..1029367 - 73 188527805 - HPSH_05225 - hypothetical protein 994 32.44 -1 1029367..1029702 - 111 188527806 - HPSH_05230 - hypothetical protein 995 33.80 -1 1029689..1030114 - 141 188527807 - HPSH_05235 - hypothetical protein 996 36.64 0 1030253..1030675 - 140 188527808 - HPSH_05240 - hypothetical protein 997 35.84 0 1030685..1030963 - 92 188527809 - HPSH_05245 - hypothetical protein 998 35.17 0 1030976..1031629 - 217 188527810 - HPSH_05250 - phage/colicin/tellurite resistance cluster terY protein 999 27.34 -2 1036094..1036360 - 88 188527811 - HPSH_05255 - hypothetical protein 1000 36.13 0 1036552..1038303 + 583 188527812 - HPSH_05260 - hypothetical protein 1001 40.71 0 1041604..1042443 + 279 188527813 - HPSH_05290 - hypothetical protein 1002 38.89 0 1042450..1042539 + 29 188527814 - HPSH_05295 - hypothetical protein 1003 40.69 0 1042645..1044492 - 615 188527815 - HPSH_05300 - arginine decarboxylase 1004 36.84 0 1044507..1045676 - 389 188527816 - HPSH_05305 - type 1 capsular polysaccharide biosynthesis protein J 1005 39.16 0 1045680..1046108 - 142 188527817 - HPSH_05310 - hypothetical protein 1006 38.17 0 1046124..1046909 - 261 188527818 - HPSH_05315 - hypothetical protein 1007 36.21 0 1046913..1047920 - 335 188527819 - HPSH_05320 - hypothetical protein 1008 38.51 0 1047921..1049909 - 662 188527820 - HPSH_05325 - methionyl-tRNA synthetase 1009 41.71 0 1050079..1051248 + 389 188527821 - HPSH_05330 - cyclopropane fatty acid synthase (cfa) 1010 37.45 0 1051251..1053122 - 623 188527822 - HPSH_05335 - hypothetical protein 1011 35.29 0 1054042..1054143 - 33 188527823 - HPSH_05345 - hypothetical protein 1012 37.04 0 1054236..1055018 - 260 188527824 - HPSH_05350 - hypothetical protein 1013 28.79 -2 1055015..1055080 - 21 188527825 - HPSH_05355 - hypothetical protein 38.76 MEAN 4.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0