IslandPath Analysis: Helicobacter pylori Shi470



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.76   STD DEV: 4.11
Helicobacter pylori Shi470, complete genome - 1..1608548
1569 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
865	 38.10	0	878730..880871	-	713	188527677	-	HPSH_04495	-	hypothetical protein
866	 27.27	-2	880915..882183	-	422	188527678	-	HPSH_04500	-	hypothetical protein
867	 30.44	-2	882184..883221	-	345	188527679	-	HPSH_04505	-	hypothetical protein
868	 36.42	0	883375..891786	+	2803	188527680	-	HPSH_04510	-	hypothetical protein
869	 36.99	0	892053..892709	+	218	188527681	-	HPSH_04515	-	PARA protein
870	 32.59	-1	892794..893063	+	89	188527682	-	HPSH_04520	-	hypothetical protein
871	 35.11	0	893095..894273	+	392	188527683	-	HPSH_04525	-	hypothetical protein
872	 30.19	-2	894298..896205	-	635	188527684	-	HPSH_04530	-	hypothetical protein
873	 32.70	-1	896499..896813	+	104	188527685	-	HPSH_04535	-	hypothetical protein
874	 35.82	0	896806..897087	+	93	188527686	-	HPSH_04540	-	hypothetical protein
875	 33.97	-1	897362..899089	-	575	188527687	-	HPSH_04545	-	conjugal transfer protein (traG)
876	 27.60	-2	899090..899647	-	185	188527688	-	HPSH_04550	-	hypothetical protein
877	 24.40	-2	899648..899938	-	96	188527689	-	HPSH_04555	-	hypothetical protein
878	 29.39	-2	899935..900390	-	151	188527690	-	HPSH_04560	-	hypothetical protein
879	 31.85	-1	900387..901328	-	313	188527691	-	HPSH_04565	-	VIRB11
880	 26.00	-2	901328..901627	-	99	188527692	-	HPSH_04570	-	hypothetical protein
881	 28.03	-2	901624..901887	-	87	188527693	-	HPSH_04575	-	hypothetical protein
882	 32.12	-1	902009..902173	-	54	188527694	-	HPSH_04580	-	hypothetical protein
883	 16.09	-2	902170..902256	-	28	188527695	-	HPSH_04585	-	hypothetical protein
884	 34.79	0	902243..903478	-	411	188527696	-	HPSH_04590	-	ComB3 protein
885	 34.50	-1	903475..905016	-	513	188527697	-	HPSH_04595	-	Component of conjugal plasmid transfer system
886	 32.52	-1	905016..906002	-	328	188527698	-	HPSH_04600	-	hypothetical protein
887	 32.56	-1	906004..906132	-	42	188527699	-	HPSH_04605	-	hypothetical protein
888	 30.90	-1	906132..908066	-	644	188527700	-	HPSH_04610	-	topoisomerase I
889	 29.33	-2	908059..910557	-	832	188527701	-	HPSH_04615	-	DNA transfer protein
890	 27.20	-2	910570..910830	-	86	188527702	-	HPSH_04620	-	hypothetical protein
891	 34.32	-1	910831..911133	-	100	188527703	-	HPSH_04625	-	hypothetical protein
892	 28.87	-2	911123..911593	-	156	188527704	-	HPSH_04630	-	hypothetical protein
893	 29.74	-2	911758..913038	-	426	188527705	-	HPSH_04635	-	hypothetical protein
894	 31.76	-1	913049..913813	-	254	188527706	-	HPSH_04640	-	hypothetical protein
895	 38.21	0	913835..915454	-	539	188527707	-	HPSH_04645	-	hypothetical protein
896	 37.45	0	915459..915701	+	80	188527708	-	HPSH_04650	-	hypothetical protein
897	 40.22	0	915726..916277	-	183	188527709	ruvA	HPSH_04655	-	Holliday junction DNA helicase motor protein
898	 37.56	0	916302..918146	-	614	188527710	-	HPSH_04660	-	hypothetical protein
899	 38.12	0	918239..919699	+	486	188527711	-	HPSH_04665	-	virulence factor MviN
900	 38.70	0	919700..921097	+	465	188527712	cysS	HPSH_04670	-	cysteinyl-tRNA synthetase
901	 41.95	0	921330..925193	+	1287	188527713	-	HPSH_04675	-	vacuolating cytotoxin A
902	 37.18	0	925190..925345	-	51	188527714	-	HPSH_04680	-	hypothetical protein
903	 39.06	0	925497..926264	-	255	188527715	-	HPSH_04685	-	iron(III) dicitrate transporter, ATP-binding protein
904	 46.08	+1	926264..927244	-	326	188527716	-	HPSH_04690	-	iron(III) dicitrate ABC transporter, permease protein (fecD)
905	 42.70	0	927237..928079	-	280	188527717	-	HPSH_04695	-	short-chain oxidoreductase
906	 43.05	+1	928220..928744	+	174	188527718	-	HPSH_04700	-	hypothetical protein
907	 33.71	-1	928847..929113	-	88	188527719	-	HPSH_04705	-	hypothetical protein
908	 33.60	-1	929094..929471	-	125	188527720	-	HPSH_04710	-	hypothetical protein
909	 29.70	-2	929531..929695	-	54	188527721	-	HPSH_04715	-	hypothetical protein
910	 46.28	+1	929699..931930	-	743	188527722	-	HPSH_04720	-	outer membrane protein BabA
911	 31.78	-1	931997..932125	+	42	188527723	-	HPSH_04725	-	hypothetical protein
912	 44.03	+1	932848..933960	-	370	188527724	-	HPSH_04735	-	hydrogenase expression/formation protein (hypD)
913	 42.19	0	933979..934215	-	78	188527725	-	HPSH_04740	-	hydrogenase expression/formation protein HypC
914	 40.33	0	934215..934943	-	242	188527726	-	HPSH_04745	-	hydrogenase expression/formation protein HypB
915	 33.33	-1	934960..935064	-	34	188527727	-	HPSH_04750	-	hypothetical protein
916	 38.67	0	935204..935503	-	99	188527728	-	HPSH_04755	-	hypothetical protein
917	 41.87	0	935514..936719	-	401	188527729	-	HPSH_04760	-	acetate kinase
918	 43.16	+1	936737..938293	-	518	188527730	-	HPSH_04765	-	phosphotransacetylase
919	 41.41	0	938515..940074	+	519	188527731	-	HPSH_04770	-	hypothetical protein
920	 40.82	0	940125..941099	+	324	188527732	flgD	HPSH_04775	-	flagellar basal body rod modification protein
921	 42.96	+1	941096..942913	+	605	188527733	flgE	HPSH_04780	-	flagellar hook protein FlgE
922	 31.60	-1	942972..943607	+	211	188527734	-	HPSH_04785	-	putative restriction endonuclease
923	 36.21	0	943588..944736	+	382	188527735	-	HPSH_04790	-	type II DNA modification enzyme (methyltransferase)
924	 40.13	0	944730..946760	+	676	188527736	-	HPSH_04795	-	rep helicase, single-stranded DNA-dependent ATPase
925	 29.41	-2	947076..947177	+	33	188527737	-	HPSH_04800	-	hypothetical protein
926	 44.87	+1	947287..948855	+	522	188527738	-	HPSH_04805	-	outer membrane protein HopC
927	 43.07	+1	948877..950457	+	526	188527739	-	HPSH_04810	-	outer membrane protein HopB
928	 40.28	0	950601..950672	-	23	188527740	-	HPSH_04815	-	hypothetical protein
929	 42.10	0	952775..955216	-	813	188527741	-	HPSH_04830	-	iron-regulated outer membrane protein
930	 42.36	0	955391..955822	-	143	188527742	-	HPSH_04835	-	hypothetical protein
931	 41.80	0	955827..959084	-	1085	188527743	carB	HPSH_04840	-	carbamoyl phosphate synthase large subunit
932	 39.83	0	959179..959871	-	230	188527744	-	HPSH_04845	-	hypothetical protein
933	 41.67	0	960014..961009	+	331	188527745	-	HPSH_04850	-	glyceraldehyde-3-phosphate dehydrogenase
934	 36.41	0	968318..969421	+	367	188527746	-	HPSH_04865	-	outer membrane protein (omp22)
935	 37.68	0	969478..969684	-	68	188527747	-	HPSH_04870	-	4-oxalocrotonate tautomerase
936	 37.11	0	969830..970411	+	193	188527748	recR	HPSH_04875	-	recombination protein RecR
937	 35.51	0	970408..971553	+	381	188527749	truD	HPSH_04880	-	tRNA pseudouridine synthase D
938	 37.62	0	971540..972472	+	310	188527750	-	HPSH_04885	-	heat shock protein HtpX
939	 37.75	0	972473..973015	+	180	188527751	folE	HPSH_04890	-	GTP cyclohydrolase I
940	 37.72	0	973031..973942	+	303	188527752	-	HPSH_04895	-	geranyltranstransferase
941	 40.55	0	973939..974742	+	267	188527753	surE	HPSH_04900	-	stationary phase survival protein SurE
942	 41.21	0	974739..975398	+	219	188527754	-	HPSH_04905	-	hypothetical protein
943	 38.31	0	975402..976004	+	200	188527755	-	HPSH_04910	-	hypothetical protein
944	 35.85	0	976001..976756	+	251	188527756	-	HPSH_04915	-	hypothetical protein
945	 42.59	0	976767..977252	+	161	188527757	-	HPSH_04920	-	hypothetical protein
946	 38.52	0	977473..979458	+	661	188527758	-	HPSH_04925	-	putative outer membrane protein HomB
947	 37.69	0	979596..980765	-	389	188527759	-	HPSH_04930	-	proline and betaine transporter
948	 34.76	0	981198..981407	-	69	188527760	-	HPSH_04935	-	hypothetical protein
949	 41.22	0	981475..982197	-	240	188527761	-	HPSH_04940	-	amino acid ABC transporter, permease protein
950	 40.80	0	982172..982948	-	258	188527762	-	HPSH_04945	-	ABC-type polar amino acid transport,periplasmic component
951	 26.98	-2	982945..983007	-	20	188527763	-	HPSH_04950	-	hypothetical protein
952	 40.30	0	983017..984150	-	377	188527764	-	HPSH_04955	-	alanine racemase, biosynthetic (alr)
953	 43.39	+1	984157..985509	-	450	188527765	-	HPSH_04960	-	D-alanine glycine permease
954	 40.71	0	985550..986782	-	410	188527766	-	HPSH_04965	-	D-Amino acid dehydrogenase
955	 40.48	0	986805..987182	-	125	188527767	-	HPSH_04970	-	hypothetical protein
956	 43.43	+1	987594..987890	-	98	188527768	-	HPSH_04975	-	hypothetical protein
957	 39.39	0	990240..990635	+	131	188527769	-	HPSH_04990	-	hypothetical protein
958	 36.00	0	991213..992226	-	337	188527770	-	HPSH_04995	-	hypothetical protein
959	 36.20	0	992236..992688	-	150	188527771	-	HPSH_05000	-	hypothetical protein
960	 43.45	+1	992702..993571	-	289	188527772	-	HPSH_05005	-	acetyl-CoA carboxylase subunit beta
961	 38.05	0	993652..994266	+	204	188527773	-	HPSH_05010	-	hypothetical protein
962	 38.36	0	994277..994933	+	218	188527774	-	HPSH_05015	-	hypothetical protein
963	 38.80	0	994936..995502	-	188	188527775	-	HPSH_05020	-	hypothetical protein
964	 40.58	0	996196..997050	-	284	188527776	-	HPSH_05035	-	prolipoprotein diacylglyceryl transferase
38.76	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.