IslandPath Analysis: Helicobacter pylori Shi470



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.76   STD DEV: 4.11
Helicobacter pylori Shi470, complete genome - 1..1608548
1569 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
822	 34.48	-1	831082..832650	+	522	188527634	-	HPSH_04280	-	cag pathogenicity island protein (cagX, cag8)
823	 36.57	0	832665..838229	+	1854	188527635	-	HPSH_04285	-	cag pathogenicity island protein (cagY, cag7)
824	 33.33	-1	838219..838353	+	44	188527636	-	HPSH_04290	-	hypothetical protein
825	 33.67	-1	838366..838965	+	199	188527637	-	HPSH_04295	-	cag pathogenicity island protein (cagZ, cag6)
826	 36.15	0	838970..839962	+	330	188527638	-	HPSH_04300	-	cag pathogenicity island protein (caga)
827	 37.78	0	839971..842217	+	748	188527639	-	HPSH_04305	-	cag pathogenicity island protein (cagb, cag5)
828	 37.53	0	842336..842716	-	126	188527640	-	HPSH_04310	-	cag pathogenicity island protein (cagg, cag4)
829	 38.31	0	842855..844300	-	481	188527641	-	HPSH_04315	-	cag pathogenicity island protein (cagd, cag3)
830	 33.33	-1	844314..844511	-	65	188527642	-	HPSH_04320	-	cag pathogenicity island protein (cage, cag2)
831	 35.63	0	844527..844874	-	115	188527643	-	HPSH_04325	-	cag pathogenicity island protein (cagz, cag1)
832	 36.94	0	845087..845917	+	276	188527644	-	HPSH_04330	-	hypothetical protein
833	 38.07	0	845992..846984	-	330	188527645	-	HPSH_04335	-	conserved hypothetical secreted protein
834	 37.86	0	846981..847886	-	301	188527646	era	HPSH_04340	-	GTP-binding protein Era
835	 38.81	0	847886..849217	-	443	188527647	hslU	HPSH_04345	-	ATP-dependent protease ATP-binding subunit
836	 43.83	+1	849217..849759	-	180	188527648	-	HPSH_04350	-	ATP-dependent protease peptidase subunit
837	 39.11	0	849763..850212	-	149	188527649	rplI	HPSH_04355	-	50S ribosomal protein L9
838	 34.78	0	850275..852344	-	689	188527650	-	HPSH_04360	-	hypothetical protein
839	 43.02	+1	852479..853924	+	481	188527651	-	HPSH_04365	-	glutamine synthetase
840	 38.27	0	854202..854282	-	26	188527652	-	HPSH_04370	-	hypothetical protein
841	 42.35	0	854616..855380	-	254	188527653	-	HPSH_04375	-	dihydrodipicolinate reductase
842	 42.75	0	855403..856782	-	459	188527654	-	HPSH_04380	-	putative Glycolate oxidase
843	 37.84	0	856784..858091	-	435	188527655	-	HPSH_04385	-	plasminogen binding protein
844	 35.05	0	858102..858740	-	212	188527656	-	HPSH_04390	-	hypothetical protein
845	 39.21	0	858740..859948	-	402	188527657	-	HPSH_04395	-	putative outer membrane protein
846	 34.64	-1	860422..860805	+	127	188527658	-	HPSH_04400	-	hypothetical protein
847	 37.33	0	860819..860893	-	24	188527659	-	HPSH_04405	-	hypothetical protein
848	 40.53	0	860900..863221	-	773	188527660	gyrB	HPSH_04410	-	DNA gyrase subunit B
849	 36.00	0	863233..864357	-	374	188527661	-	HPSH_04415	-	DNA polymerase III subunit beta
850	 40.26	0	864415..865482	-	355	188527662	-	HPSH_04420	-	phospholipase A1
851	 37.55	0	865497..866825	-	442	188527663	-	HPSH_04425	-	sodium- and chloride-dependent transporter
852	 37.40	0	866836..868164	-	442	188527664	-	HPSH_04430	-	sodium- and chloride-dependent transporter
853	 38.06	0	868394..868795	+	133	188527665	-	HPSH_04435	-	hypothetical protein
854	 34.48	-1	868785..869045	+	86	188527666	-	HPSH_04440	-	hypothetical protein
855	 37.35	0	869042..870310	-	422	188527667	murD	HPSH_04445	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
856	 40.58	0	870312..871373	-	353	188527668	mraY	HPSH_04450	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
857	 36.18	0	871498..872340	+	280	188527669	-	HPSH_04455	-	hypothetical protein
858	 44.44	+1	872440..872628	+	62	188527670	rpmB	HPSH_04460	-	50S ribosomal protein L28
859	 40.19	0	872778..873914	+	378	188527671	-	HPSH_04465	-	putative potassium channel protein
860	 35.35	0	873916..874311	-	131	188527672	-	HPSH_04470	-	hypothetical protein
861	 34.93	0	874327..874701	-	124	188527673	-	HPSH_04475	-	hypothetical protein
862	 29.06	-2	874998..876074	+	358	188527674	-	HPSH_04480	-	integrase/recombinase (xerD)
863	 29.76	-2	876139..877341	-	400	188527675	-	HPSH_04485	-	hypothetical protein
864	 31.39	-1	877341..878726	-	461	188527676	-	HPSH_04490	-	hypothetical protein
865	 38.10	0	878730..880871	-	713	188527677	-	HPSH_04495	-	hypothetical protein
866	 27.27	-2	880915..882183	-	422	188527678	-	HPSH_04500	-	hypothetical protein
867	 30.44	-2	882184..883221	-	345	188527679	-	HPSH_04505	-	hypothetical protein
868	 36.42	0	883375..891786	+	2803	188527680	-	HPSH_04510	-	hypothetical protein
869	 36.99	0	892053..892709	+	218	188527681	-	HPSH_04515	-	PARA protein
870	 32.59	-1	892794..893063	+	89	188527682	-	HPSH_04520	-	hypothetical protein
871	 35.11	0	893095..894273	+	392	188527683	-	HPSH_04525	-	hypothetical protein
872	 30.19	-2	894298..896205	-	635	188527684	-	HPSH_04530	-	hypothetical protein
873	 32.70	-1	896499..896813	+	104	188527685	-	HPSH_04535	-	hypothetical protein
874	 35.82	0	896806..897087	+	93	188527686	-	HPSH_04540	-	hypothetical protein
875	 33.97	-1	897362..899089	-	575	188527687	-	HPSH_04545	-	conjugal transfer protein (traG)
876	 27.60	-2	899090..899647	-	185	188527688	-	HPSH_04550	-	hypothetical protein
877	 24.40	-2	899648..899938	-	96	188527689	-	HPSH_04555	-	hypothetical protein
878	 29.39	-2	899935..900390	-	151	188527690	-	HPSH_04560	-	hypothetical protein
879	 31.85	-1	900387..901328	-	313	188527691	-	HPSH_04565	-	VIRB11
880	 26.00	-2	901328..901627	-	99	188527692	-	HPSH_04570	-	hypothetical protein
881	 28.03	-2	901624..901887	-	87	188527693	-	HPSH_04575	-	hypothetical protein
882	 32.12	-1	902009..902173	-	54	188527694	-	HPSH_04580	-	hypothetical protein
883	 16.09	-2	902170..902256	-	28	188527695	-	HPSH_04585	-	hypothetical protein
884	 34.79	0	902243..903478	-	411	188527696	-	HPSH_04590	-	ComB3 protein
885	 34.50	-1	903475..905016	-	513	188527697	-	HPSH_04595	-	Component of conjugal plasmid transfer system
886	 32.52	-1	905016..906002	-	328	188527698	-	HPSH_04600	-	hypothetical protein
887	 32.56	-1	906004..906132	-	42	188527699	-	HPSH_04605	-	hypothetical protein
888	 30.90	-1	906132..908066	-	644	188527700	-	HPSH_04610	-	topoisomerase I
889	 29.33	-2	908059..910557	-	832	188527701	-	HPSH_04615	-	DNA transfer protein
890	 27.20	-2	910570..910830	-	86	188527702	-	HPSH_04620	-	hypothetical protein
891	 34.32	-1	910831..911133	-	100	188527703	-	HPSH_04625	-	hypothetical protein
892	 28.87	-2	911123..911593	-	156	188527704	-	HPSH_04630	-	hypothetical protein
893	 29.74	-2	911758..913038	-	426	188527705	-	HPSH_04635	-	hypothetical protein
894	 31.76	-1	913049..913813	-	254	188527706	-	HPSH_04640	-	hypothetical protein
895	 38.21	0	913835..915454	-	539	188527707	-	HPSH_04645	-	hypothetical protein
896	 37.45	0	915459..915701	+	80	188527708	-	HPSH_04650	-	hypothetical protein
897	 40.22	0	915726..916277	-	183	188527709	ruvA	HPSH_04655	-	Holliday junction DNA helicase motor protein
898	 37.56	0	916302..918146	-	614	188527710	-	HPSH_04660	-	hypothetical protein
899	 38.12	0	918239..919699	+	486	188527711	-	HPSH_04665	-	virulence factor MviN
900	 38.70	0	919700..921097	+	465	188527712	cysS	HPSH_04670	-	cysteinyl-tRNA synthetase
901	 41.95	0	921330..925193	+	1287	188527713	-	HPSH_04675	-	vacuolating cytotoxin A
902	 37.18	0	925190..925345	-	51	188527714	-	HPSH_04680	-	hypothetical protein
903	 39.06	0	925497..926264	-	255	188527715	-	HPSH_04685	-	iron(III) dicitrate transporter, ATP-binding protein
904	 46.08	+1	926264..927244	-	326	188527716	-	HPSH_04690	-	iron(III) dicitrate ABC transporter, permease protein (fecD)
905	 42.70	0	927237..928079	-	280	188527717	-	HPSH_04695	-	short-chain oxidoreductase
906	 43.05	+1	928220..928744	+	174	188527718	-	HPSH_04700	-	hypothetical protein
907	 33.71	-1	928847..929113	-	88	188527719	-	HPSH_04705	-	hypothetical protein
908	 33.60	-1	929094..929471	-	125	188527720	-	HPSH_04710	-	hypothetical protein
909	 29.70	-2	929531..929695	-	54	188527721	-	HPSH_04715	-	hypothetical protein
910	 46.28	+1	929699..931930	-	743	188527722	-	HPSH_04720	-	outer membrane protein BabA
911	 31.78	-1	931997..932125	+	42	188527723	-	HPSH_04725	-	hypothetical protein
912	 44.03	+1	932848..933960	-	370	188527724	-	HPSH_04735	-	hydrogenase expression/formation protein (hypD)
913	 42.19	0	933979..934215	-	78	188527725	-	HPSH_04740	-	hydrogenase expression/formation protein HypC
914	 40.33	0	934215..934943	-	242	188527726	-	HPSH_04745	-	hydrogenase expression/formation protein HypB
915	 33.33	-1	934960..935064	-	34	188527727	-	HPSH_04750	-	hypothetical protein
916	 38.67	0	935204..935503	-	99	188527728	-	HPSH_04755	-	hypothetical protein
917	 41.87	0	935514..936719	-	401	188527729	-	HPSH_04760	-	acetate kinase
918	 43.16	+1	936737..938293	-	518	188527730	-	HPSH_04765	-	phosphotransacetylase
919	 41.41	0	938515..940074	+	519	188527731	-	HPSH_04770	-	hypothetical protein
920	 40.82	0	940125..941099	+	324	188527732	flgD	HPSH_04775	-	flagellar basal body rod modification protein
921	 42.96	+1	941096..942913	+	605	188527733	flgE	HPSH_04780	-	flagellar hook protein FlgE
38.76	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.