IslandPath Analysis: Helicobacter pylori Shi470



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.76   STD DEV: 4.11
Helicobacter pylori Shi470, complete genome - 1..1608548
1569 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
779	 38.50	0	793034..793246	+	70	188527591	rpsU	HPSH_04065	-	30S ribosomal protein S21
780	 43.15	+1	793283..794026	+	247	188527592	fabG	HPSH_04070	-	3-ketoacyl-(acyl-carrier-protein) reductase
781	 41.77	0	794256..794492	+	78	188527593	-	HPSH_04075	-	acyl carrier protein
782	 37.96	0	794682..794789	+	35	188527594	-	HPSH_04080	-	hypothetical protein
783	 44.96	+1	794805..796043	+	412	188527595	-	HPSH_04085	-	3-oxoacyl-(acyl carrier protein) synthase II
784	 40.68	0	796066..797004	+	312	188527596	-	HPSH_04090	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
785	 35.56	0	797117..797206	+	29	188527597	-	HPSH_04095	-	hypothetical protein
786	 26.98	-2	797193..797255	-	20	188527598	-	HPSH_04100	-	hypothetical protein
787	 33.84	-1	797415..797612	+	65	188527599	-	HPSH_04105	-	hypothetical protein
788	 37.23	0	797699..798520	-	273	188527600	-	HPSH_04110	-	hypothetical protein
789	 34.77	0	798517..799491	-	324	188527601	-	HPSH_04115	-	hypothetical protein
790	 39.33	0	799504..800187	-	227	188527602	-	HPSH_04120	-	hypothetical protein
791	 41.32	0	800200..801063	-	287	188527603	-	HPSH_04125	-	hypothetical protein
792	 39.22	0	801088..801291	-	67	188527604	rpmE	HPSH_04130	-	50S ribosomal protein L31
793	 42.75	0	801553..802869	+	438	188527605	rho	HPSH_04135	-	transcription termination factor Rho
794	 40.76	0	802905..803672	+	255	188527606	-	HPSH_04140	-	glutamate racemase
795	 37.95	0	804109..807594	-	1161	188527607	-	HPSH_04145	-	cag pathogenicity island protein (cagA, cag26)
796	 33.77	-1	808001..808228	+	75	188527608	-	HPSH_04150	-	cag pathogenicity island protein (cagB)
797	 43.10	+1	808395..808742	+	115	188527609	-	HPSH_04155	-	cag pathogenicity island protein (cagC, cag25)
798	 31.57	-1	808744..809367	+	207	188527610	-	HPSH_04160	-	cag pathogenicity island protein (cagD, cag24)
799	 35.98	0	809382..812327	+	981	188527611	-	HPSH_04165	-	cag pathogenicity island protein (cagE, cag23)
800	 31.10	-1	812329..813135	+	268	188527612	-	HPSH_04170	-	cag pathogenicity island protein (cagF, cag22)
801	 36.11	0	813190..813621	+	143	188527613	-	HPSH_04175	-	cag pathogenicity island protein (cagG, cag21)
802	 44.95	+1	813607..813804	-	65	188527614	-	HPSH_04180	-	hypothetical protein
803	 39.98	0	813803..814735	+	310	188527615	-	HPSH_04185	-	cag pathogenicity island protein (cagH, cag20)
804	 38.25	0	814746..815885	+	379	188527616	-	HPSH_04190	-	cag pathogenicity island protein (cagI, cag19)
805	 35.01	0	815882..816595	+	237	188527617	-	HPSH_04195	-	cag pathogenicity island protein (cagL, cag18)
806	 34.31	-1	816678..817598	-	306	188527618	-	HPSH_04200	-	cag pathogenicity island protein (cagN, cag17)
807	 33.60	-1	817613..818743	-	376	188527619	-	HPSH_04205	-	cag pathogenicity island protein (cagM, cag16)
808	 30.14	-2	819169..819513	+	114	188527620	-	HPSH_04210	-	cag pathogenicity island protein (cagP, cag15)
809	 38.15	0	819912..823169	-	1085	188527621	-	HPSH_04215	-	cag pathogenicity island protein (cagA, cag26)
810	 37.37	0	823362..823460	+	32	188527622	-	HPSH_04220	-	hypothetical protein
811	 33.33	-1	823481..823708	+	75	188527623	-	HPSH_04225	-	cag pathogenicity island protein (cagB)
812	 39.58	0	823876..824067	+	63	188527624	-	HPSH_04230	-	cag pathogenicity island protein (cagC, cag25)
813	 22.92	-2	824137..824232	+	31	188527625	-	HPSH_04235	-	hypothetical protein
814	 33.01	-1	824858..825163	-	101	188527626	-	HPSH_04240	-	cag pathogenicity island protein (cagQ, cag14)
815	 35.52	0	825192..825374	-	60	188527627	-	HPSH_04245	-	hypothetical protein
816	 21.01	-2	825507..825644	+	45	188527628	-	HPSH_04250	-	hypothetical protein
817	 33.33	-1	826078..826677	+	199	188527629	-	HPSH_04255	-	cag pathogenicity island protein (cagS, cag13)
818	 36.30	0	826879..827721	-	280	188527630	-	HPSH_04260	-	cag pathogenicity island protein (cagT, cag12)
819	 33.95	-1	827737..828384	-	215	188527631	-	HPSH_04265	-	cag pathogenicity island protein (cagU, cag11)
820	 33.47	-1	828660..829418	+	252	188527632	-	HPSH_04270	-	cag pathogenicity island protein (cagV, cag10)
821	 36.07	0	829423..831030	+	535	188527633	-	HPSH_04275	-	cag pathogenicity island protein (cagW, cag9)
822	 34.48	-1	831082..832650	+	522	188527634	-	HPSH_04280	-	cag pathogenicity island protein (cagX, cag8)
823	 36.57	0	832665..838229	+	1854	188527635	-	HPSH_04285	-	cag pathogenicity island protein (cagY, cag7)
824	 33.33	-1	838219..838353	+	44	188527636	-	HPSH_04290	-	hypothetical protein
825	 33.67	-1	838366..838965	+	199	188527637	-	HPSH_04295	-	cag pathogenicity island protein (cagZ, cag6)
826	 36.15	0	838970..839962	+	330	188527638	-	HPSH_04300	-	cag pathogenicity island protein (caga)
827	 37.78	0	839971..842217	+	748	188527639	-	HPSH_04305	-	cag pathogenicity island protein (cagb, cag5)
828	 37.53	0	842336..842716	-	126	188527640	-	HPSH_04310	-	cag pathogenicity island protein (cagg, cag4)
829	 38.31	0	842855..844300	-	481	188527641	-	HPSH_04315	-	cag pathogenicity island protein (cagd, cag3)
830	 33.33	-1	844314..844511	-	65	188527642	-	HPSH_04320	-	cag pathogenicity island protein (cage, cag2)
831	 35.63	0	844527..844874	-	115	188527643	-	HPSH_04325	-	cag pathogenicity island protein (cagz, cag1)
832	 36.94	0	845087..845917	+	276	188527644	-	HPSH_04330	-	hypothetical protein
833	 38.07	0	845992..846984	-	330	188527645	-	HPSH_04335	-	conserved hypothetical secreted protein
834	 37.86	0	846981..847886	-	301	188527646	era	HPSH_04340	-	GTP-binding protein Era
835	 38.81	0	847886..849217	-	443	188527647	hslU	HPSH_04345	-	ATP-dependent protease ATP-binding subunit
836	 43.83	+1	849217..849759	-	180	188527648	-	HPSH_04350	-	ATP-dependent protease peptidase subunit
837	 39.11	0	849763..850212	-	149	188527649	rplI	HPSH_04355	-	50S ribosomal protein L9
838	 34.78	0	850275..852344	-	689	188527650	-	HPSH_04360	-	hypothetical protein
839	 43.02	+1	852479..853924	+	481	188527651	-	HPSH_04365	-	glutamine synthetase
840	 38.27	0	854202..854282	-	26	188527652	-	HPSH_04370	-	hypothetical protein
841	 42.35	0	854616..855380	-	254	188527653	-	HPSH_04375	-	dihydrodipicolinate reductase
842	 42.75	0	855403..856782	-	459	188527654	-	HPSH_04380	-	putative Glycolate oxidase
843	 37.84	0	856784..858091	-	435	188527655	-	HPSH_04385	-	plasminogen binding protein
844	 35.05	0	858102..858740	-	212	188527656	-	HPSH_04390	-	hypothetical protein
845	 39.21	0	858740..859948	-	402	188527657	-	HPSH_04395	-	putative outer membrane protein
846	 34.64	-1	860422..860805	+	127	188527658	-	HPSH_04400	-	hypothetical protein
847	 37.33	0	860819..860893	-	24	188527659	-	HPSH_04405	-	hypothetical protein
848	 40.53	0	860900..863221	-	773	188527660	gyrB	HPSH_04410	-	DNA gyrase subunit B
849	 36.00	0	863233..864357	-	374	188527661	-	HPSH_04415	-	DNA polymerase III subunit beta
850	 40.26	0	864415..865482	-	355	188527662	-	HPSH_04420	-	phospholipase A1
851	 37.55	0	865497..866825	-	442	188527663	-	HPSH_04425	-	sodium- and chloride-dependent transporter
852	 37.40	0	866836..868164	-	442	188527664	-	HPSH_04430	-	sodium- and chloride-dependent transporter
853	 38.06	0	868394..868795	+	133	188527665	-	HPSH_04435	-	hypothetical protein
854	 34.48	-1	868785..869045	+	86	188527666	-	HPSH_04440	-	hypothetical protein
855	 37.35	0	869042..870310	-	422	188527667	murD	HPSH_04445	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
856	 40.58	0	870312..871373	-	353	188527668	mraY	HPSH_04450	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
857	 36.18	0	871498..872340	+	280	188527669	-	HPSH_04455	-	hypothetical protein
858	 44.44	+1	872440..872628	+	62	188527670	rpmB	HPSH_04460	-	50S ribosomal protein L28
859	 40.19	0	872778..873914	+	378	188527671	-	HPSH_04465	-	putative potassium channel protein
860	 35.35	0	873916..874311	-	131	188527672	-	HPSH_04470	-	hypothetical protein
861	 34.93	0	874327..874701	-	124	188527673	-	HPSH_04475	-	hypothetical protein
862	 29.06	-2	874998..876074	+	358	188527674	-	HPSH_04480	-	integrase/recombinase (xerD)
863	 29.76	-2	876139..877341	-	400	188527675	-	HPSH_04485	-	hypothetical protein
864	 31.39	-1	877341..878726	-	461	188527676	-	HPSH_04490	-	hypothetical protein
865	 38.10	0	878730..880871	-	713	188527677	-	HPSH_04495	-	hypothetical protein
866	 27.27	-2	880915..882183	-	422	188527678	-	HPSH_04500	-	hypothetical protein
867	 30.44	-2	882184..883221	-	345	188527679	-	HPSH_04505	-	hypothetical protein
868	 36.42	0	883375..891786	+	2803	188527680	-	HPSH_04510	-	hypothetical protein
869	 36.99	0	892053..892709	+	218	188527681	-	HPSH_04515	-	PARA protein
870	 32.59	-1	892794..893063	+	89	188527682	-	HPSH_04520	-	hypothetical protein
871	 35.11	0	893095..894273	+	392	188527683	-	HPSH_04525	-	hypothetical protein
872	 30.19	-2	894298..896205	-	635	188527684	-	HPSH_04530	-	hypothetical protein
873	 32.70	-1	896499..896813	+	104	188527685	-	HPSH_04535	-	hypothetical protein
874	 35.82	0	896806..897087	+	93	188527686	-	HPSH_04540	-	hypothetical protein
875	 33.97	-1	897362..899089	-	575	188527687	-	HPSH_04545	-	conjugal transfer protein (traG)
876	 27.60	-2	899090..899647	-	185	188527688	-	HPSH_04550	-	hypothetical protein
877	 24.40	-2	899648..899938	-	96	188527689	-	HPSH_04555	-	hypothetical protein
878	 29.39	-2	899935..900390	-	151	188527690	-	HPSH_04560	-	hypothetical protein
38.76	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.