version 1.0
Helicobacter pylori Shi470, complete genome - 1..1608548 1569 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 722 40.62 0 727240..727815 - 191 188527534 adk HPSH_03780 - adenylate kinase 723 40.60 0 727832..729565 - 577 188527535 aspS HPSH_03785 - aspartyl-tRNA synthetase 724 38.85 0 729600..730541 - 313 188527536 - HPSH_03790 - chemotaxis protein 725 39.62 0 730619..732589 + 656 188527537 ligA HPSH_03795 - NAD-dependent DNA ligase LigA 726 38.14 0 732690..733022 + 110 188527538 - HPSH_03800 - hypothetical protein 727 30.72 -1 733594..734052 + 152 188527539 - HPSH_03805 - putative abc transporter, ATP-binding protein 728 31.33 -1 734052..734801 + 249 188527540 - HPSH_03810 - hypothetical protein 729 39.30 0 734861..744430 - 3189 188527541 - HPSH_03815 - putative vacuolating cytotoxin (VacA)-like protein 730 39.82 0 744569..745138 - 189 188527542 - HPSH_03820 - hypothetical protein 731 42.92 +1 745135..748221 - 1028 188527543 - HPSH_03825 - cytoplasmic pump protein of the hefABC efflux system HefC 732 40.85 0 748234..748938 - 234 188527544 - HPSH_03830 - membrane fusion protein of the hefABC efflux system HefB 733 39.19 0 748948..750381 - 477 188527545 - HPSH_03835 - outer-membrane protein of the hefABC efflux system HefA 734 40.20 0 750392..751411 - 339 188527546 hemE HPSH_03840 - uroporphyrinogen decarboxylase 735 38.60 0 751477..752046 - 189 188527547 - HPSH_03845 - hypothetical protein 736 35.31 0 752091..752747 - 218 188527548 - HPSH_03850 - endonuclease III 737 44.16 +1 752865..754397 - 510 188527549 - HPSH_03855 - flagellin A 738 32.81 -1 754561..755325 + 254 188527550 - HPSH_03860 - putative secretion/efflux abc transporter, ATP-binding protein 739 31.65 -1 755395..756342 + 315 188527551 - HPSH_03865 - multidrug resistance protein (spaB) 740 39.78 0 756414..757715 + 433 188527552 - HPSH_03870 - methyl-accepting chemotaxis protein (MCP) 741 38.41 0 757738..758859 + 373 188527553 - HPSH_03875 - 8-amino-7-oxononanoate synthase (bioF) 742 40.35 0 758859..760838 + 659 188527554 - HPSH_03880 - penicillin-binding protein 1A (PBP-1A) 743 39.03 0 760841..761419 - 192 188527555 - HPSH_03885 - tumor necrosis factor alpha-inducing protein 744 38.33 0 761578..761697 + 39 188527556 - HPSH_03890 - hypothetical protein 745 39.65 0 761895..763367 - 490 188527557 - HPSH_03895 - DsbB-like protein 746 38.18 0 763376..763540 - 54 188527558 - HPSH_03900 - hypothetical protein 747 29.62 -2 763680..765458 - 592 188527559 - HPSH_03905 - hypothetical protein 748 41.80 0 765566..766120 - 184 188527560 oorC HPSH_03910 - 2-oxoglutarate-acceptor oxidoreductase subunit OorC 749 43.19 +1 766120..766941 - 273 188527561 oorB HPSH_03915 - 2-oxoglutarate-acceptor oxidoreductase subunit OorB 750 44.77 +1 766943..768070 - 375 188527562 oorA HPSH_03920 - 2-oxoglutarate-acceptor oxidoreductase subunit OorA 751 44.74 +1 768070..768411 - 113 188527563 oorD HPSH_03925 - 2-oxoglutarate-acceptor oxidoreductase subunit OorD 752 32.26 -1 768399..768491 - 30 188527564 - HPSH_03930 - hypothetical protein 753 38.37 0 768587..769519 - 310 188527565 - HPSH_03935 - aminodeoxychorismate lyase (pabC) 754 35.21 0 769500..772433 + 977 188527566 - HPSH_03940 - hypothetical protein 755 40.69 0 772435..772665 + 76 188527567 - HPSH_03945 - hypothetical protein 756 41.25 0 772662..773318 + 218 188527568 - HPSH_03950 - endonuclease III (nth) 757 36.56 0 773400..773771 + 123 188527569 - HPSH_03955 - flagellar motor switch protein 758 35.99 0 773783..774649 + 288 188527570 - HPSH_03960 - hypothetical protein 759 39.14 0 774633..775580 + 315 188527571 - HPSH_03965 - hypothetical protein 760 40.39 0 775584..776603 + 339 188527572 - HPSH_03970 - dihydroorotase 761 38.34 0 776579..777697 + 372 188527573 - HPSH_03975 - hypothetical protein 762 35.14 0 777704..778258 + 184 188527574 - HPSH_03980 - hypothetical protein 763 36.59 0 778264..780291 + 675 188527575 - HPSH_03985 - hypothetical protein 764 42.15 0 780368..781240 + 290 188527576 - HPSH_03990 - methylene-tetrahydrofolate dehydrogenase 765 39.98 0 781241..782113 + 290 188527577 - HPSH_03995 - signal peptidase I (lepB) 766 40.92 0 782122..782820 + 232 188527578 - HPSH_04000 - hypothetical protein 767 41.23 0 782841..783296 + 151 188527579 - HPSH_04005 - ribose-5-phosphate isomerase B 768 36.94 0 783349..783681 + 110 188527580 - HPSH_04010 - hypothetical protein 769 43.15 +1 783739..784278 + 179 188527581 - HPSH_04015 - adenine phosphoribosyltransferase 770 41.11 0 784293..784871 + 192 188527582 - HPSH_04020 - hypothetical protein 771 40.64 0 784933..786423 + 496 188527583 - HPSH_04025 - leucyl aminopeptidase 772 41.42 0 786425..787525 + 366 188527584 - HPSH_04030 - translation-associated GTPase 773 37.46 0 787559..788431 + 290 188527585 - HPSH_04035 - hypothetical protein 774 37.15 0 788507..789553 - 348 188527586 - HPSH_04040 - membrane protein 775 39.05 0 789668..790489 + 273 188527587 dapF HPSH_04045 - diaminopimelate epimerase 776 41.05 0 790596..791243 + 215 188527588 - HPSH_04050 - hypothetical protein 777 32.51 -1 791267..791509 - 80 188527589 - HPSH_04055 - hypothetical protein 778 38.85 0 791682..792932 + 416 188527590 - HPSH_04060 - hypothetical protein 779 38.50 0 793034..793246 + 70 188527591 rpsU HPSH_04065 - 30S ribosomal protein S21 780 43.15 +1 793283..794026 + 247 188527592 fabG HPSH_04070 - 3-ketoacyl-(acyl-carrier-protein) reductase 781 41.77 0 794256..794492 + 78 188527593 - HPSH_04075 - acyl carrier protein 782 37.96 0 794682..794789 + 35 188527594 - HPSH_04080 - hypothetical protein 783 44.96 +1 794805..796043 + 412 188527595 - HPSH_04085 - 3-oxoacyl-(acyl carrier protein) synthase II 784 40.68 0 796066..797004 + 312 188527596 - HPSH_04090 - acetyl-CoA carboxylase carboxyltransferase subunit alpha 785 35.56 0 797117..797206 + 29 188527597 - HPSH_04095 - hypothetical protein 786 26.98 -2 797193..797255 - 20 188527598 - HPSH_04100 - hypothetical protein 787 33.84 -1 797415..797612 + 65 188527599 - HPSH_04105 - hypothetical protein 788 37.23 0 797699..798520 - 273 188527600 - HPSH_04110 - hypothetical protein 789 34.77 0 798517..799491 - 324 188527601 - HPSH_04115 - hypothetical protein 790 39.33 0 799504..800187 - 227 188527602 - HPSH_04120 - hypothetical protein 791 41.32 0 800200..801063 - 287 188527603 - HPSH_04125 - hypothetical protein 792 39.22 0 801088..801291 - 67 188527604 rpmE HPSH_04130 - 50S ribosomal protein L31 793 42.75 0 801553..802869 + 438 188527605 rho HPSH_04135 - transcription termination factor Rho 794 40.76 0 802905..803672 + 255 188527606 - HPSH_04140 - glutamate racemase 795 37.95 0 804109..807594 - 1161 188527607 - HPSH_04145 - cag pathogenicity island protein (cagA, cag26) 796 33.77 -1 808001..808228 + 75 188527608 - HPSH_04150 - cag pathogenicity island protein (cagB) 797 43.10 +1 808395..808742 + 115 188527609 - HPSH_04155 - cag pathogenicity island protein (cagC, cag25) 798 31.57 -1 808744..809367 + 207 188527610 - HPSH_04160 - cag pathogenicity island protein (cagD, cag24) 799 35.98 0 809382..812327 + 981 188527611 - HPSH_04165 - cag pathogenicity island protein (cagE, cag23) 800 31.10 -1 812329..813135 + 268 188527612 - HPSH_04170 - cag pathogenicity island protein (cagF, cag22) 801 36.11 0 813190..813621 + 143 188527613 - HPSH_04175 - cag pathogenicity island protein (cagG, cag21) 802 44.95 +1 813607..813804 - 65 188527614 - HPSH_04180 - hypothetical protein 803 39.98 0 813803..814735 + 310 188527615 - HPSH_04185 - cag pathogenicity island protein (cagH, cag20) 804 38.25 0 814746..815885 + 379 188527616 - HPSH_04190 - cag pathogenicity island protein (cagI, cag19) 805 35.01 0 815882..816595 + 237 188527617 - HPSH_04195 - cag pathogenicity island protein (cagL, cag18) 806 34.31 -1 816678..817598 - 306 188527618 - HPSH_04200 - cag pathogenicity island protein (cagN, cag17) 807 33.60 -1 817613..818743 - 376 188527619 - HPSH_04205 - cag pathogenicity island protein (cagM, cag16) 808 30.14 -2 819169..819513 + 114 188527620 - HPSH_04210 - cag pathogenicity island protein (cagP, cag15) 809 38.15 0 819912..823169 - 1085 188527621 - HPSH_04215 - cag pathogenicity island protein (cagA, cag26) 810 37.37 0 823362..823460 + 32 188527622 - HPSH_04220 - hypothetical protein 811 33.33 -1 823481..823708 + 75 188527623 - HPSH_04225 - cag pathogenicity island protein (cagB) 812 39.58 0 823876..824067 + 63 188527624 - HPSH_04230 - cag pathogenicity island protein (cagC, cag25) 813 22.92 -2 824137..824232 + 31 188527625 - HPSH_04235 - hypothetical protein 814 33.01 -1 824858..825163 - 101 188527626 - HPSH_04240 - cag pathogenicity island protein (cagQ, cag14) 815 35.52 0 825192..825374 - 60 188527627 - HPSH_04245 - hypothetical protein 816 21.01 -2 825507..825644 + 45 188527628 - HPSH_04250 - hypothetical protein 817 33.33 -1 826078..826677 + 199 188527629 - HPSH_04255 - cag pathogenicity island protein (cagS, cag13) 818 36.30 0 826879..827721 - 280 188527630 - HPSH_04260 - cag pathogenicity island protein (cagT, cag12) 819 33.95 -1 827737..828384 - 215 188527631 - HPSH_04265 - cag pathogenicity island protein (cagU, cag11) 820 33.47 -1 828660..829418 + 252 188527632 - HPSH_04270 - cag pathogenicity island protein (cagV, cag10) 821 36.07 0 829423..831030 + 535 188527633 - HPSH_04275 - cag pathogenicity island protein (cagW, cag9) 38.76 MEAN 4.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.