IslandPath Analysis: Helicobacter pylori Shi470



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.76   STD DEV: 4.11
Helicobacter pylori Shi470, complete genome - 1..1608548
1569 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
720	 36.87	0	725560..726210	-	216	188527532	-	HPSH_03770	-	putative lipopolysaccharide biosynthesis protein
721	 34.93	0	726217..727215	-	332	188527533	-	HPSH_03775	-	putative lipopolysaccharide biosynthesis protein
722	 40.62	0	727240..727815	-	191	188527534	adk	HPSH_03780	-	adenylate kinase
723	 40.60	0	727832..729565	-	577	188527535	aspS	HPSH_03785	-	aspartyl-tRNA synthetase
724	 38.85	0	729600..730541	-	313	188527536	-	HPSH_03790	-	chemotaxis protein
725	 39.62	0	730619..732589	+	656	188527537	ligA	HPSH_03795	-	NAD-dependent DNA ligase LigA
726	 38.14	0	732690..733022	+	110	188527538	-	HPSH_03800	-	hypothetical protein
727	 30.72	-1	733594..734052	+	152	188527539	-	HPSH_03805	-	putative abc transporter, ATP-binding protein
728	 31.33	-1	734052..734801	+	249	188527540	-	HPSH_03810	-	hypothetical protein
729	 39.30	0	734861..744430	-	3189	188527541	-	HPSH_03815	-	putative vacuolating cytotoxin (VacA)-like protein
730	 39.82	0	744569..745138	-	189	188527542	-	HPSH_03820	-	hypothetical protein
731	 42.92	+1	745135..748221	-	1028	188527543	-	HPSH_03825	-	cytoplasmic pump protein of the hefABC efflux system HefC
732	 40.85	0	748234..748938	-	234	188527544	-	HPSH_03830	-	membrane fusion protein of the hefABC efflux system HefB
733	 39.19	0	748948..750381	-	477	188527545	-	HPSH_03835	-	outer-membrane protein of the hefABC efflux system HefA
734	 40.20	0	750392..751411	-	339	188527546	hemE	HPSH_03840	-	uroporphyrinogen decarboxylase
735	 38.60	0	751477..752046	-	189	188527547	-	HPSH_03845	-	hypothetical protein
736	 35.31	0	752091..752747	-	218	188527548	-	HPSH_03850	-	endonuclease III
737	 44.16	+1	752865..754397	-	510	188527549	-	HPSH_03855	-	flagellin A
738	 32.81	-1	754561..755325	+	254	188527550	-	HPSH_03860	-	putative secretion/efflux abc transporter, ATP-binding protein
739	 31.65	-1	755395..756342	+	315	188527551	-	HPSH_03865	-	multidrug resistance protein (spaB)
740	 39.78	0	756414..757715	+	433	188527552	-	HPSH_03870	-	methyl-accepting chemotaxis protein (MCP)
741	 38.41	0	757738..758859	+	373	188527553	-	HPSH_03875	-	8-amino-7-oxononanoate synthase (bioF)
742	 40.35	0	758859..760838	+	659	188527554	-	HPSH_03880	-	penicillin-binding protein 1A (PBP-1A)
743	 39.03	0	760841..761419	-	192	188527555	-	HPSH_03885	-	tumor necrosis factor alpha-inducing protein
744	 38.33	0	761578..761697	+	39	188527556	-	HPSH_03890	-	hypothetical protein
745	 39.65	0	761895..763367	-	490	188527557	-	HPSH_03895	-	DsbB-like protein
746	 38.18	0	763376..763540	-	54	188527558	-	HPSH_03900	-	hypothetical protein
747	 29.62	-2	763680..765458	-	592	188527559	-	HPSH_03905	-	hypothetical protein
748	 41.80	0	765566..766120	-	184	188527560	oorC	HPSH_03910	-	2-oxoglutarate-acceptor oxidoreductase subunit OorC
749	 43.19	+1	766120..766941	-	273	188527561	oorB	HPSH_03915	-	2-oxoglutarate-acceptor oxidoreductase subunit OorB
750	 44.77	+1	766943..768070	-	375	188527562	oorA	HPSH_03920	-	2-oxoglutarate-acceptor oxidoreductase subunit OorA
751	 44.74	+1	768070..768411	-	113	188527563	oorD	HPSH_03925	-	2-oxoglutarate-acceptor oxidoreductase subunit OorD
752	 32.26	-1	768399..768491	-	30	188527564	-	HPSH_03930	-	hypothetical protein
753	 38.37	0	768587..769519	-	310	188527565	-	HPSH_03935	-	aminodeoxychorismate lyase (pabC)
754	 35.21	0	769500..772433	+	977	188527566	-	HPSH_03940	-	hypothetical protein
755	 40.69	0	772435..772665	+	76	188527567	-	HPSH_03945	-	hypothetical protein
756	 41.25	0	772662..773318	+	218	188527568	-	HPSH_03950	-	endonuclease III (nth)
757	 36.56	0	773400..773771	+	123	188527569	-	HPSH_03955	-	flagellar motor switch protein
758	 35.99	0	773783..774649	+	288	188527570	-	HPSH_03960	-	hypothetical protein
759	 39.14	0	774633..775580	+	315	188527571	-	HPSH_03965	-	hypothetical protein
760	 40.39	0	775584..776603	+	339	188527572	-	HPSH_03970	-	dihydroorotase
761	 38.34	0	776579..777697	+	372	188527573	-	HPSH_03975	-	hypothetical protein
762	 35.14	0	777704..778258	+	184	188527574	-	HPSH_03980	-	hypothetical protein
763	 36.59	0	778264..780291	+	675	188527575	-	HPSH_03985	-	hypothetical protein
764	 42.15	0	780368..781240	+	290	188527576	-	HPSH_03990	-	methylene-tetrahydrofolate dehydrogenase
765	 39.98	0	781241..782113	+	290	188527577	-	HPSH_03995	-	signal peptidase I (lepB)
766	 40.92	0	782122..782820	+	232	188527578	-	HPSH_04000	-	hypothetical protein
767	 41.23	0	782841..783296	+	151	188527579	-	HPSH_04005	-	ribose-5-phosphate isomerase B
768	 36.94	0	783349..783681	+	110	188527580	-	HPSH_04010	-	hypothetical protein
769	 43.15	+1	783739..784278	+	179	188527581	-	HPSH_04015	-	adenine phosphoribosyltransferase
770	 41.11	0	784293..784871	+	192	188527582	-	HPSH_04020	-	hypothetical protein
771	 40.64	0	784933..786423	+	496	188527583	-	HPSH_04025	-	leucyl aminopeptidase
772	 41.42	0	786425..787525	+	366	188527584	-	HPSH_04030	-	translation-associated GTPase
773	 37.46	0	787559..788431	+	290	188527585	-	HPSH_04035	-	hypothetical protein
774	 37.15	0	788507..789553	-	348	188527586	-	HPSH_04040	-	membrane protein
775	 39.05	0	789668..790489	+	273	188527587	dapF	HPSH_04045	-	diaminopimelate epimerase
776	 41.05	0	790596..791243	+	215	188527588	-	HPSH_04050	-	hypothetical protein
777	 32.51	-1	791267..791509	-	80	188527589	-	HPSH_04055	-	hypothetical protein
778	 38.85	0	791682..792932	+	416	188527590	-	HPSH_04060	-	hypothetical protein
779	 38.50	0	793034..793246	+	70	188527591	rpsU	HPSH_04065	-	30S ribosomal protein S21
780	 43.15	+1	793283..794026	+	247	188527592	fabG	HPSH_04070	-	3-ketoacyl-(acyl-carrier-protein) reductase
781	 41.77	0	794256..794492	+	78	188527593	-	HPSH_04075	-	acyl carrier protein
782	 37.96	0	794682..794789	+	35	188527594	-	HPSH_04080	-	hypothetical protein
783	 44.96	+1	794805..796043	+	412	188527595	-	HPSH_04085	-	3-oxoacyl-(acyl carrier protein) synthase II
784	 40.68	0	796066..797004	+	312	188527596	-	HPSH_04090	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
785	 35.56	0	797117..797206	+	29	188527597	-	HPSH_04095	-	hypothetical protein
786	 26.98	-2	797193..797255	-	20	188527598	-	HPSH_04100	-	hypothetical protein
787	 33.84	-1	797415..797612	+	65	188527599	-	HPSH_04105	-	hypothetical protein
788	 37.23	0	797699..798520	-	273	188527600	-	HPSH_04110	-	hypothetical protein
789	 34.77	0	798517..799491	-	324	188527601	-	HPSH_04115	-	hypothetical protein
790	 39.33	0	799504..800187	-	227	188527602	-	HPSH_04120	-	hypothetical protein
791	 41.32	0	800200..801063	-	287	188527603	-	HPSH_04125	-	hypothetical protein
792	 39.22	0	801088..801291	-	67	188527604	rpmE	HPSH_04130	-	50S ribosomal protein L31
793	 42.75	0	801553..802869	+	438	188527605	rho	HPSH_04135	-	transcription termination factor Rho
794	 40.76	0	802905..803672	+	255	188527606	-	HPSH_04140	-	glutamate racemase
795	 37.95	0	804109..807594	-	1161	188527607	-	HPSH_04145	-	cag pathogenicity island protein (cagA, cag26)
796	 33.77	-1	808001..808228	+	75	188527608	-	HPSH_04150	-	cag pathogenicity island protein (cagB)
797	 43.10	+1	808395..808742	+	115	188527609	-	HPSH_04155	-	cag pathogenicity island protein (cagC, cag25)
798	 31.57	-1	808744..809367	+	207	188527610	-	HPSH_04160	-	cag pathogenicity island protein (cagD, cag24)
799	 35.98	0	809382..812327	+	981	188527611	-	HPSH_04165	-	cag pathogenicity island protein (cagE, cag23)
800	 31.10	-1	812329..813135	+	268	188527612	-	HPSH_04170	-	cag pathogenicity island protein (cagF, cag22)
801	 36.11	0	813190..813621	+	143	188527613	-	HPSH_04175	-	cag pathogenicity island protein (cagG, cag21)
802	 44.95	+1	813607..813804	-	65	188527614	-	HPSH_04180	-	hypothetical protein
803	 39.98	0	813803..814735	+	310	188527615	-	HPSH_04185	-	cag pathogenicity island protein (cagH, cag20)
804	 38.25	0	814746..815885	+	379	188527616	-	HPSH_04190	-	cag pathogenicity island protein (cagI, cag19)
805	 35.01	0	815882..816595	+	237	188527617	-	HPSH_04195	-	cag pathogenicity island protein (cagL, cag18)
806	 34.31	-1	816678..817598	-	306	188527618	-	HPSH_04200	-	cag pathogenicity island protein (cagN, cag17)
807	 33.60	-1	817613..818743	-	376	188527619	-	HPSH_04205	-	cag pathogenicity island protein (cagM, cag16)
808	 30.14	-2	819169..819513	+	114	188527620	-	HPSH_04210	-	cag pathogenicity island protein (cagP, cag15)
809	 38.15	0	819912..823169	-	1085	188527621	-	HPSH_04215	-	cag pathogenicity island protein (cagA, cag26)
810	 37.37	0	823362..823460	+	32	188527622	-	HPSH_04220	-	hypothetical protein
811	 33.33	-1	823481..823708	+	75	188527623	-	HPSH_04225	-	cag pathogenicity island protein (cagB)
812	 39.58	0	823876..824067	+	63	188527624	-	HPSH_04230	-	cag pathogenicity island protein (cagC, cag25)
813	 22.92	-2	824137..824232	+	31	188527625	-	HPSH_04235	-	hypothetical protein
814	 33.01	-1	824858..825163	-	101	188527626	-	HPSH_04240	-	cag pathogenicity island protein (cagQ, cag14)
815	 35.52	0	825192..825374	-	60	188527627	-	HPSH_04245	-	hypothetical protein
816	 21.01	-2	825507..825644	+	45	188527628	-	HPSH_04250	-	hypothetical protein
817	 33.33	-1	826078..826677	+	199	188527629	-	HPSH_04255	-	cag pathogenicity island protein (cagS, cag13)
818	 36.30	0	826879..827721	-	280	188527630	-	HPSH_04260	-	cag pathogenicity island protein (cagT, cag12)
819	 33.95	-1	827737..828384	-	215	188527631	-	HPSH_04265	-	cag pathogenicity island protein (cagU, cag11)
38.76	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.