version 1.0
Helicobacter pylori Shi470, complete genome - 1..1608548 1569 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 688 44.05 +1 692629..692712 + 27 188527500 - HPSH_03600 - hypothetical protein 689 37.72 0 692721..693905 + 394 188527501 - HPSH_03605 - alpha-(1,3)-fucosyltransferase 690 38.34 0 693914..694492 - 192 188527502 - HPSH_03610 - hypothetical protein 691 43.00 +1 694549..695955 - 468 188527503 aspA HPSH_03615 - aspartate ammonia-lyase 692 44.92 +1 696010..697278 - 422 188527504 - HPSH_03620 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase 693 37.25 0 697281..697688 - 135 188527505 - HPSH_03625 - hypothetical protein 694 42.70 0 697700..698521 - 273 188527506 - HPSH_03630 - UDP-glucose pyrophosphorylase (galU) 695 37.85 0 698518..700200 - 560 188527507 - HPSH_03635 - soluble lytic murein transglycosylase 696 39.80 0 700209..700502 - 97 188527508 - HPSH_03640 - hypothetical protein 697 36.82 0 700499..701818 - 439 188527509 - HPSH_03645 - glutamyl-tRNA synthetase 698 37.88 0 702712..702843 - 43 188527510 - HPSH_03660 - hypothetical protein 699 36.42 0 702902..704068 - 388 188527511 - HPSH_03665 - poly(A) polymerase 700 38.91 0 704130..704810 + 226 188527512 - HPSH_03670 - ExsB trans-regulatory protein 701 34.33 -1 704856..705155 - 99 188527513 - HPSH_03675 - outer membrane protein HopH 702 42.38 0 705979..706431 + 150 188527514 - HPSH_03680 - hypothetical protein 703 35.51 0 706546..706959 + 137 188527515 - HPSH_03685 - hypothetical protein 704 37.49 0 706964..708502 - 512 188527516 - HPSH_03690 - hypothetical protein 705 42.64 0 708504..709040 - 178 188527517 - HPSH_03695 - Hydrogenase expression/formation protein 706 40.15 0 709037..709711 - 224 188527518 - HPSH_03700 - quinone-reactive Ni/Fe hydrogenase, cytochrome b subunit (hydC) 707 43.18 +1 709724..711460 - 578 188527519 - HPSH_03705 - quinone-reactive Ni/Fe hydrogenase HydB 708 45.63 +1 711477..712631 - 384 188527520 - HPSH_03710 - Hydrogenase, small subunit 709 44.27 +1 712766..713350 + 194 188527521 - HPSH_03715 - modulator of drug activity 710 39.88 0 713397..715442 - 681 188527522 - HPSH_03720 - hypothetical protein 711 44.38 +1 715567..716625 - 352 188527523 - HPSH_03725 - cysteine-rich protein F 712 40.88 0 716637..717842 - 401 188527524 - HPSH_03730 - tetrahydrodipicolinate N-succinyltransferase (dapD) 713 42.50 0 717845..718924 - 359 188527525 ispG HPSH_03735 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 714 39.72 0 719044..720171 + 375 188527526 - HPSH_03740 - hypothetical protein 715 38.30 0 720164..721513 + 449 188527527 murC HPSH_03745 - UDP-N-acetylmuramate--L-alanine ligase 716 36.89 0 721513..721878 + 121 188527528 - HPSH_03750 - hypothetical protein 717 37.96 0 721885..724134 + 749 188527529 - HPSH_03755 - recombination and DNA strand exchange inhibitor protein 718 40.42 0 724282..724803 - 173 188527530 - HPSH_03760 - inorganic pyrophosphatase 719 36.11 0 724859..725614 - 251 188527531 - HPSH_03765 - putative lipopolysaccharide biosynthesis protein 720 36.87 0 725560..726210 - 216 188527532 - HPSH_03770 - putative lipopolysaccharide biosynthesis protein 721 34.93 0 726217..727215 - 332 188527533 - HPSH_03775 - putative lipopolysaccharide biosynthesis protein 722 40.62 0 727240..727815 - 191 188527534 adk HPSH_03780 - adenylate kinase 723 40.60 0 727832..729565 - 577 188527535 aspS HPSH_03785 - aspartyl-tRNA synthetase 724 38.85 0 729600..730541 - 313 188527536 - HPSH_03790 - chemotaxis protein 725 39.62 0 730619..732589 + 656 188527537 ligA HPSH_03795 - NAD-dependent DNA ligase LigA 726 38.14 0 732690..733022 + 110 188527538 - HPSH_03800 - hypothetical protein 727 30.72 -1 733594..734052 + 152 188527539 - HPSH_03805 - putative abc transporter, ATP-binding protein 728 31.33 -1 734052..734801 + 249 188527540 - HPSH_03810 - hypothetical protein 729 39.30 0 734861..744430 - 3189 188527541 - HPSH_03815 - putative vacuolating cytotoxin (VacA)-like protein 730 39.82 0 744569..745138 - 189 188527542 - HPSH_03820 - hypothetical protein 731 42.92 +1 745135..748221 - 1028 188527543 - HPSH_03825 - cytoplasmic pump protein of the hefABC efflux system HefC 732 40.85 0 748234..748938 - 234 188527544 - HPSH_03830 - membrane fusion protein of the hefABC efflux system HefB 733 39.19 0 748948..750381 - 477 188527545 - HPSH_03835 - outer-membrane protein of the hefABC efflux system HefA 734 40.20 0 750392..751411 - 339 188527546 hemE HPSH_03840 - uroporphyrinogen decarboxylase 735 38.60 0 751477..752046 - 189 188527547 - HPSH_03845 - hypothetical protein 736 35.31 0 752091..752747 - 218 188527548 - HPSH_03850 - endonuclease III 737 44.16 +1 752865..754397 - 510 188527549 - HPSH_03855 - flagellin A 738 32.81 -1 754561..755325 + 254 188527550 - HPSH_03860 - putative secretion/efflux abc transporter, ATP-binding protein 739 31.65 -1 755395..756342 + 315 188527551 - HPSH_03865 - multidrug resistance protein (spaB) 740 39.78 0 756414..757715 + 433 188527552 - HPSH_03870 - methyl-accepting chemotaxis protein (MCP) 741 38.41 0 757738..758859 + 373 188527553 - HPSH_03875 - 8-amino-7-oxononanoate synthase (bioF) 742 40.35 0 758859..760838 + 659 188527554 - HPSH_03880 - penicillin-binding protein 1A (PBP-1A) 743 39.03 0 760841..761419 - 192 188527555 - HPSH_03885 - tumor necrosis factor alpha-inducing protein 744 38.33 0 761578..761697 + 39 188527556 - HPSH_03890 - hypothetical protein 745 39.65 0 761895..763367 - 490 188527557 - HPSH_03895 - DsbB-like protein 746 38.18 0 763376..763540 - 54 188527558 - HPSH_03900 - hypothetical protein 747 29.62 -2 763680..765458 - 592 188527559 - HPSH_03905 - hypothetical protein 748 41.80 0 765566..766120 - 184 188527560 oorC HPSH_03910 - 2-oxoglutarate-acceptor oxidoreductase subunit OorC 749 43.19 +1 766120..766941 - 273 188527561 oorB HPSH_03915 - 2-oxoglutarate-acceptor oxidoreductase subunit OorB 750 44.77 +1 766943..768070 - 375 188527562 oorA HPSH_03920 - 2-oxoglutarate-acceptor oxidoreductase subunit OorA 751 44.74 +1 768070..768411 - 113 188527563 oorD HPSH_03925 - 2-oxoglutarate-acceptor oxidoreductase subunit OorD 752 32.26 -1 768399..768491 - 30 188527564 - HPSH_03930 - hypothetical protein 753 38.37 0 768587..769519 - 310 188527565 - HPSH_03935 - aminodeoxychorismate lyase (pabC) 754 35.21 0 769500..772433 + 977 188527566 - HPSH_03940 - hypothetical protein 755 40.69 0 772435..772665 + 76 188527567 - HPSH_03945 - hypothetical protein 756 41.25 0 772662..773318 + 218 188527568 - HPSH_03950 - endonuclease III (nth) 757 36.56 0 773400..773771 + 123 188527569 - HPSH_03955 - flagellar motor switch protein 758 35.99 0 773783..774649 + 288 188527570 - HPSH_03960 - hypothetical protein 759 39.14 0 774633..775580 + 315 188527571 - HPSH_03965 - hypothetical protein 760 40.39 0 775584..776603 + 339 188527572 - HPSH_03970 - dihydroorotase 761 38.34 0 776579..777697 + 372 188527573 - HPSH_03975 - hypothetical protein 762 35.14 0 777704..778258 + 184 188527574 - HPSH_03980 - hypothetical protein 763 36.59 0 778264..780291 + 675 188527575 - HPSH_03985 - hypothetical protein 764 42.15 0 780368..781240 + 290 188527576 - HPSH_03990 - methylene-tetrahydrofolate dehydrogenase 765 39.98 0 781241..782113 + 290 188527577 - HPSH_03995 - signal peptidase I (lepB) 766 40.92 0 782122..782820 + 232 188527578 - HPSH_04000 - hypothetical protein 767 41.23 0 782841..783296 + 151 188527579 - HPSH_04005 - ribose-5-phosphate isomerase B 768 36.94 0 783349..783681 + 110 188527580 - HPSH_04010 - hypothetical protein 769 43.15 +1 783739..784278 + 179 188527581 - HPSH_04015 - adenine phosphoribosyltransferase 770 41.11 0 784293..784871 + 192 188527582 - HPSH_04020 - hypothetical protein 771 40.64 0 784933..786423 + 496 188527583 - HPSH_04025 - leucyl aminopeptidase 772 41.42 0 786425..787525 + 366 188527584 - HPSH_04030 - translation-associated GTPase 773 37.46 0 787559..788431 + 290 188527585 - HPSH_04035 - hypothetical protein 774 37.15 0 788507..789553 - 348 188527586 - HPSH_04040 - membrane protein 775 39.05 0 789668..790489 + 273 188527587 dapF HPSH_04045 - diaminopimelate epimerase 776 41.05 0 790596..791243 + 215 188527588 - HPSH_04050 - hypothetical protein 777 32.51 -1 791267..791509 - 80 188527589 - HPSH_04055 - hypothetical protein 778 38.85 0 791682..792932 + 416 188527590 - HPSH_04060 - hypothetical protein 779 38.50 0 793034..793246 + 70 188527591 rpsU HPSH_04065 - 30S ribosomal protein S21 780 43.15 +1 793283..794026 + 247 188527592 fabG HPSH_04070 - 3-ketoacyl-(acyl-carrier-protein) reductase 781 41.77 0 794256..794492 + 78 188527593 - HPSH_04075 - acyl carrier protein 782 37.96 0 794682..794789 + 35 188527594 - HPSH_04080 - hypothetical protein 783 44.96 +1 794805..796043 + 412 188527595 - HPSH_04085 - 3-oxoacyl-(acyl carrier protein) synthase II 784 40.68 0 796066..797004 + 312 188527596 - HPSH_04090 - acetyl-CoA carboxylase carboxyltransferase subunit alpha 785 35.56 0 797117..797206 + 29 188527597 - HPSH_04095 - hypothetical protein 786 26.98 -2 797193..797255 - 20 188527598 - HPSH_04100 - hypothetical protein 787 33.84 -1 797415..797612 + 65 188527599 - HPSH_04105 - hypothetical protein 38.76 MEAN 4.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0