version 1.0
Helicobacter pylori Shi470, complete genome - 1..1608548 1569 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 586 42.69 0 582079..583392 - 437 188527398 - HPSH_03035 - hypothetical protein 587 35.71 0 583386..583469 - 27 188527399 - HPSH_03040 - hypothetical protein 588 41.98 0 583519..584397 - 292 188527400 - HPSH_03045 - carbon-nitrogen hydrolase 589 34.69 0 584401..584547 - 48 188527401 - HPSH_03050 - hypothetical protein 590 40.00 0 584576..585235 - 219 188527402 - HPSH_03055 - molybdopterin biosynthesis protein 591 31.25 -1 585288..585527 - 79 188527403 - HPSH_03060 - hypothetical protein 592 39.11 0 585514..585894 - 126 188527404 fliS HPSH_03065 - flagellar protein FliS 593 42.23 0 585942..587999 - 685 188527405 fliD HPSH_03070 - flagellar capping protein 594 39.72 0 588016..588375 - 119 188527406 - HPSH_03075 - flagellar protein FlaG 595 37.82 0 588470..589672 - 400 188527407 - HPSH_03080 - hypothetical protein 596 35.07 0 589665..590471 - 268 188527408 - HPSH_03085 - cell division membrane protein (ftsX) 597 41.22 0 590458..591129 - 223 188527409 - HPSH_03090 - cell division protein 598 34.60 -1 591126..592307 - 393 188527410 trmB HPSH_03095 - tRNA (guanine-N(7))-methyltransferase 599 40.62 0 592318..593565 - 415 188527411 - HPSH_03100 - hypothetical protein 600 38.62 0 593528..594511 - 327 188527412 - HPSH_03105 - hypothetical protein 601 40.64 0 595914..597035 + 373 188527413 - HPSH_03120 - rod shape-determining protein (mreB) 602 43.78 +1 597129..598085 - 318 188527414 - HPSH_03125 - ribose-phosphate pyrophosphokinase 603 33.33 -1 598082..598153 - 23 188527415 - HPSH_03130 - hypothetical protein 604 38.68 0 598150..598635 - 161 188527416 - HPSH_03135 - histidine triad (HIT) family protein 605 37.65 0 598645..600057 - 470 188527417 - HPSH_03140 - UDP-MurNac-pentapeptide presynthetase (murF) 606 37.34 0 600113..600835 - 240 188527418 - HPSH_03145 - 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase 607 36.02 0 600835..601878 - 347 188527419 ddl HPSH_03150 - D-alanyl-alanine synthetase A 608 39.20 0 601956..602432 - 158 188527420 - HPSH_03155 - phosphatidylglycerophosphatase A 609 41.65 0 602536..603690 + 384 188527421 - HPSH_03160 - putative aminotransferase 610 38.74 0 603699..604160 + 153 188527422 - HPSH_03165 - xanthine guanine phosphoribosyl transferase (gpt) 611 40.98 0 604162..605481 + 439 188527423 - HPSH_03170 - hypothetical protein 612 37.72 0 605499..605726 + 75 188527424 - HPSH_03175 - hypothetical protein 613 33.79 -1 606787..607221 + 144 188527425 - HPSH_03190 - hypothetical protein 614 37.25 0 608386..608691 + 101 188527426 - HPSH_03210 - hypothetical protein 615 34.64 -1 608700..609767 + 355 188527427 - HPSH_03215 - hypothetical protein 616 36.14 0 609790..610821 + 343 188527428 - HPSH_03220 - hypothetical protein 617 40.73 0 610915..611901 + 328 188527429 - HPSH_03225 - transcriptional regulator 618 40.20 0 611871..612788 + 305 188527430 - HPSH_03230 - outer membrane protein 619 44.52 +1 615029..616360 - 443 188527431 - HPSH_03245 - anaerobic C4-dicarboxylate transporter 620 45.42 +1 616445..617437 + 330 188527432 - HPSH_03250 - L-asparaginase II (ansB) 621 37.37 0 617446..617643 - 65 188527433 - HPSH_03255 - hypothetical protein 622 31.48 -1 617777..617884 - 35 188527434 - HPSH_03260 - hypothetical protein 623 39.28 0 617969..618439 - 156 188527435 - HPSH_03265 - hypothetical protein 624 40.90 0 618468..618890 - 140 188527436 - HPSH_03270 - hypothetical protein 625 37.12 0 619157..619789 + 210 188527437 - HPSH_03275 - hypothetical protein 626 39.45 0 619858..621573 + 571 188527438 - HPSH_03280 - DNA polymerase III subunits gamma and tau 627 40.05 0 621570..621971 + 133 188527439 - HPSH_03285 - hypothetical protein 628 42.74 0 621984..622706 + 240 188527440 - HPSH_03290 - putative abc transporter, ATP-binding protein 629 36.79 0 622709..623953 + 414 188527441 - HPSH_03295 - RNA polymerase factor sigma-54 630 37.60 0 624274..625188 + 304 188527442 - HPSH_03300 - outer membrane protein HopH 631 39.31 0 625296..626516 - 406 188527443 - HPSH_03305 - hypothetical protein 632 43.19 +1 626961..627863 - 300 188527444 - HPSH_03310 - hypothetical protein 633 33.91 -1 628108..628452 - 114 188527445 - HPSH_03315 - hypothetical protein 634 38.83 0 628472..629398 - 308 188527446 mraW HPSH_03320 - S-adenosyl-methyltransferase MraW 635 41.45 0 629598..630410 - 270 188527447 - HPSH_03325 - Outer membrane protein/porin 636 40.38 0 630594..633419 + 941 188527448 uvrA HPSH_03330 - excinuclease ABC subunit A 637 35.89 0 633606..634427 - 273 188527449 - HPSH_03335 - hypothetical protein 638 40.14 0 634532..635677 - 381 188527450 - HPSH_03340 - transcriptional activator of flagella proteins 639 37.94 0 635674..636129 - 151 188527451 - HPSH_03345 - hypothetical protein 640 41.35 0 636147..638627 - 826 188527452 - HPSH_03350 - DNA gyrase subunit A 641 40.83 0 638647..639033 - 128 188527453 - HPSH_03355 - diacylglycerol kinase 642 36.79 0 639026..640039 - 337 188527454 - HPSH_03360 - hypothetical protein 643 42.71 0 640362..640862 - 166 188527455 - HPSH_03365 - hypothetical protein 644 43.73 +1 640879..643176 - 765 188527456 - HPSH_03370 - N-methylhydantoinase 645 44.96 +1 643188..645329 - 713 188527457 - HPSH_03375 - hydantoin utilization protein A 646 39.02 0 645548..646549 - 333 188527458 - HPSH_03380 - putative outer membrane protein 647 41.25 0 646676..648040 - 454 188527459 - HPSH_03385 - short-chain fatty acids transporter 648 39.58 0 647961..648104 + 47 188527460 - HPSH_03390 - hypothetical protein 649 44.39 +1 648059..648682 - 207 188527461 - HPSH_03395 - succinyl-CoA-transferase subunit B 650 43.92 +1 648679..649377 - 232 188527462 - HPSH_03400 - 3-oxoacid Coa-transferase, subunit A 651 46.26 +1 649388..650563 - 391 188527463 - HPSH_03405 - acetyl coenzyme A acetyltransferase (thiolase) (fadA) 652 37.56 0 650820..651221 - 133 188527464 - HPSH_03410 - hypothetical protein 653 26.80 -2 651311..652183 - 290 188527465 - HPSH_03415 - putative type II restriction enzyme 654 30.04 -2 652186..653400 - 404 188527466 - HPSH_03420 - putative type II cytosine specific methyltransferase 655 37.64 0 653455..654267 - 270 188527467 - HPSH_03425 - hypothetical protein 656 39.39 0 654393..656339 + 648 188527468 - HPSH_03430 - iron(II) transport protein 657 39.84 0 656582..658885 + 767 188527469 - HPSH_03435 - iron(III) dicitrate transport protein 658 38.55 0 658924..659670 - 248 188527470 fliP HPSH_03440 - flagellar biosynthesis protein FliP 659 29.41 -2 659649..659801 - 50 188527471 - HPSH_03445 - hypothetical protein 660 42.30 0 659800..661059 + 419 188527472 - HPSH_03450 - UDP-N-acetylglucosamine pyrophosphorylase (glmU) 661 46.97 +1 661324..661653 + 109 188527473 - HPSH_03455 - hypothetical protein 662 39.10 0 661752..662150 + 132 188527474 - HPSH_03460 - hypothetical protein 663 40.90 0 662322..664688 + 788 188527475 - HPSH_03465 - ribonucleotide-diphosphate reductase subunit alpha 664 39.98 0 664750..665697 + 315 188527476 - HPSH_03470 - putative lipopolysaccharide biosynthesis protein 665 37.28 0 666524..667030 + 168 188527477 - HPSH_03485 - methylated-DNA--protein-cysteine methyltransferase (dat1) 666 38.75 0 667093..668163 - 356 188527478 - HPSH_03490 - integrase-recombinase protein 667 34.17 -1 668170..668289 - 39 188527479 - HPSH_03495 - hypothetical protein 668 43.39 +1 668413..669585 - 390 188527480 - HPSH_03500 - aspartate aminotransferase 669 43.67 +1 669744..670556 - 270 188527481 - HPSH_03505 - outer membrane protein HorF 670 39.39 0 670659..670757 - 32 188527482 - HPSH_03510 - hypothetical protein 671 39.24 0 670800..675029 - 1409 188527483 - HPSH_03515 - hypothetical protein 672 39.65 0 674993..675625 - 210 188527484 - HPSH_03520 - hypothetical protein 673 39.15 0 675703..676992 - 429 188527485 - HPSH_03525 - anaerobic glycerol-3-phosphate dehydrogenase, subunit C (glpC) 674 39.30 0 676989..678362 - 457 188527486 - HPSH_03530 - coproporphyrinogen III oxidase 675 33.72 -1 678362..678877 - 171 188527487 - HPSH_03535 - hypothetical protein 676 41.80 0 678915..680012 - 365 188527488 - HPSH_03540 - chorismate synthase 677 38.91 0 680009..680725 - 238 188527489 rnc HPSH_03545 - ribonuclease III 678 40.43 0 680700..681164 - 154 188527490 rnhA HPSH_03550 - ribonuclease H 679 34.32 -1 681151..682167 - 338 188527491 - HPSH_03555 - hypothetical protein 680 38.33 0 682178..683458 - 426 188527492 - HPSH_03560 - hypothetical protein 681 41.26 0 683458..684882 - 474 188527493 gatB HPSH_03565 - aspartyl/glutamyl-tRNA amidotransferase subunit B 682 37.88 0 684882..686180 - 432 188527494 - HPSH_03570 - processing protease 683 40.96 0 686183..687244 - 353 188527495 - HPSH_03575 - hypothetical protein 684 42.74 0 687246..689891 - 881 188527496 - HPSH_03580 - protective surface antigen D15 685 38.60 0 690064..691146 - 360 188527497 - HPSH_03585 - hypothetical protein 38.76 MEAN 4.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0