version 1.0
Helicobacter pylori Shi470, complete genome - 1..1608548 1569 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 533 33.59 -1 531690..532082 + 130 188527345 - HPSH_02760 - hypothetical protein 534 36.67 0 532124..532663 + 179 188527346 - HPSH_02765 - N-6 adenine methyltransferase 535 36.96 0 532672..533223 + 183 188527347 fliL HPSH_02770 - flagellar basal body-associated protein FliL 536 38.38 0 533290..533586 + 98 188527348 acpS HPSH_02775 - 4'-phosphopantetheinyl transferase 537 45.93 +1 533692..533826 + 44 188527349 - HPSH_02780 - iron(III) dicitrate transport protein (fecA) 538 37.04 0 533830..534450 - 206 188527350 - HPSH_02785 - hypothetical protein 539 36.80 0 534532..535368 + 278 188527351 - HPSH_02790 - putative lipopolysaccharide biosynthesis protein 540 39.90 0 535451..536485 + 344 188527352 - HPSH_02795 - bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein 541 40.96 0 536665..537411 + 248 188527353 - HPSH_02800 - hypothetical protein 542 40.76 0 537530..538108 + 192 188527354 ribA HPSH_02805 - GTP cyclohydrolase II 543 40.99 0 538182..538403 + 73 188527355 - HPSH_02810 - molybdopterin converting factor, subunit 1 (moaD) 544 37.67 0 538404..538841 + 145 188527356 - HPSH_02815 - molybdopterin converting factor, subunit 2 545 39.74 0 538854..539384 + 176 188527357 mogA HPSH_02820 - molybdenum cofactor biosynthesis protein 546 40.25 0 539393..539869 + 158 188527358 moaC HPSH_02825 - molybdenum cofactor biosynthesis protein C 547 37.55 0 539988..540770 + 260 188527359 - HPSH_02830 - flagellar sheath adhesin 548 36.56 0 540796..541632 + 278 188527360 - HPSH_02835 - outer membrane protein (omp18) 549 37.83 0 541745..543100 + 451 188527361 tig HPSH_02840 - trigger factor 550 44.56 +1 543121..543708 + 195 188527362 clpP HPSH_02845 - ATP-dependent Clp protease proteolytic subunit 551 38.64 0 543713..544240 + 175 188527363 def HPSH_02850 - peptide deformylase 552 41.35 0 544243..545763 + 506 188527364 - HPSH_02855 - sigma-54 interacting protein 553 42.99 +1 545788..547848 + 686 188527365 - HPSH_02860 - cadmium-transporting ATPase 554 35.69 0 547884..549158 + 424 188527366 - HPSH_02865 - anti-codon nuclease masking agent (prrB) 555 41.80 0 549367..550866 - 499 188527367 - HPSH_02870 - outer membrane protein HofF 556 39.55 0 551146..552432 - 428 188527368 - HPSH_02875 - lipoprotein release system transmembrane protein 557 39.88 0 552368..554965 - 865 188527369 - HPSH_02880 - preprotein translocase subunit SecA 558 33.68 -1 555085..555666 + 193 188527370 lolA HPSH_02885 - outer-membrane lipoprotein carrier protein 559 37.04 0 555691..555825 - 44 188527371 - HPSH_02890 - hypothetical protein 560 38.83 0 556159..556686 + 175 188527372 - HPSH_02895 - hypothetical protein 561 39.18 0 556693..558060 - 455 188527373 - HPSH_02900 - hypothetical protein 562 37.52 0 558154..559443 - 429 188527374 - HPSH_02905 - hypothetical protein 563 36.59 0 559843..559965 - 40 188527375 - HPSH_02910 - hypothetical protein 564 44.82 +1 560042..562600 - 852 188527376 - HPSH_02915 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 565 36.84 0 562731..563414 + 227 188527377 - HPSH_02920 - hypothetical protein 566 41.22 0 563524..564246 + 240 188527378 pyrH HPSH_02925 - uridylate kinase 567 36.89 0 564289..564513 + 74 188527379 - HPSH_02930 - DNA-directed RNA polymerase subunit omega 568 38.65 0 564500..566830 + 776 188527380 - HPSH_02935 - penta-phosphate guanosine-3'-pyrophosphohydrolase (spoT) 569 39.21 0 566851..568059 + 402 188527381 - HPSH_02940 - tyrosyl-tRNA synthetase 570 44.14 +1 568070..569161 + 363 188527382 - HPSH_02945 - hypothetical protein 571 39.08 0 569168..570490 + 440 188527383 - HPSH_02950 - N-acetylmuramoyl-L-alanine amidase 572 35.37 0 570509..571246 + 245 188527384 - HPSH_02955 - hypothetical protein 573 34.16 -1 572414..573019 - 201 188527385 - HPSH_02970 - molybdopterin-guanine dinucleotide biosynthesis protein A 574 35.26 0 573189..574070 + 293 188527386 moaA HPSH_02975 - molybdenum cofactor biosynthesis protein A 575 41.43 0 574203..574412 - 69 188527387 - HPSH_02980 - hypothetical protein 576 40.48 0 574311..574646 + 111 188527388 - HPSH_02985 - hypothetical protein 577 37.00 0 574528..574854 + 108 188527389 - HPSH_02990 - hypothetical protein 578 42.62 0 574871..575764 + 297 188527390 - HPSH_02995 - hypothetical protein 579 45.96 +1 575776..576630 + 284 188527391 - HPSH_03000 - hypothetical protein 580 41.26 0 576670..577035 + 121 188527392 - HPSH_03005 - hypothetical protein 581 41.05 0 577044..577937 - 297 188527393 - HPSH_03010 - cell division protein (ftsY) 582 33.69 -1 577944..578501 - 185 188527394 - HPSH_03015 - hypothetical protein 583 38.89 0 578626..579273 + 215 188527395 - HPSH_03020 - hypothetical protein 584 42.06 0 579251..580762 + 503 188527396 - HPSH_03025 - hypothetical protein 585 38.92 0 580763..582016 - 417 188527397 - HPSH_03030 - hypothetical protein 586 42.69 0 582079..583392 - 437 188527398 - HPSH_03035 - hypothetical protein 587 35.71 0 583386..583469 - 27 188527399 - HPSH_03040 - hypothetical protein 588 41.98 0 583519..584397 - 292 188527400 - HPSH_03045 - carbon-nitrogen hydrolase 589 34.69 0 584401..584547 - 48 188527401 - HPSH_03050 - hypothetical protein 590 40.00 0 584576..585235 - 219 188527402 - HPSH_03055 - molybdopterin biosynthesis protein 591 31.25 -1 585288..585527 - 79 188527403 - HPSH_03060 - hypothetical protein 592 39.11 0 585514..585894 - 126 188527404 fliS HPSH_03065 - flagellar protein FliS 593 42.23 0 585942..587999 - 685 188527405 fliD HPSH_03070 - flagellar capping protein 594 39.72 0 588016..588375 - 119 188527406 - HPSH_03075 - flagellar protein FlaG 595 37.82 0 588470..589672 - 400 188527407 - HPSH_03080 - hypothetical protein 596 35.07 0 589665..590471 - 268 188527408 - HPSH_03085 - cell division membrane protein (ftsX) 597 41.22 0 590458..591129 - 223 188527409 - HPSH_03090 - cell division protein 598 34.60 -1 591126..592307 - 393 188527410 trmB HPSH_03095 - tRNA (guanine-N(7))-methyltransferase 599 40.62 0 592318..593565 - 415 188527411 - HPSH_03100 - hypothetical protein 600 38.62 0 593528..594511 - 327 188527412 - HPSH_03105 - hypothetical protein 601 40.64 0 595914..597035 + 373 188527413 - HPSH_03120 - rod shape-determining protein (mreB) 602 43.78 +1 597129..598085 - 318 188527414 - HPSH_03125 - ribose-phosphate pyrophosphokinase 603 33.33 -1 598082..598153 - 23 188527415 - HPSH_03130 - hypothetical protein 604 38.68 0 598150..598635 - 161 188527416 - HPSH_03135 - histidine triad (HIT) family protein 605 37.65 0 598645..600057 - 470 188527417 - HPSH_03140 - UDP-MurNac-pentapeptide presynthetase (murF) 606 37.34 0 600113..600835 - 240 188527418 - HPSH_03145 - 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase 607 36.02 0 600835..601878 - 347 188527419 ddl HPSH_03150 - D-alanyl-alanine synthetase A 608 39.20 0 601956..602432 - 158 188527420 - HPSH_03155 - phosphatidylglycerophosphatase A 609 41.65 0 602536..603690 + 384 188527421 - HPSH_03160 - putative aminotransferase 610 38.74 0 603699..604160 + 153 188527422 - HPSH_03165 - xanthine guanine phosphoribosyl transferase (gpt) 611 40.98 0 604162..605481 + 439 188527423 - HPSH_03170 - hypothetical protein 612 37.72 0 605499..605726 + 75 188527424 - HPSH_03175 - hypothetical protein 613 33.79 -1 606787..607221 + 144 188527425 - HPSH_03190 - hypothetical protein 614 37.25 0 608386..608691 + 101 188527426 - HPSH_03210 - hypothetical protein 615 34.64 -1 608700..609767 + 355 188527427 - HPSH_03215 - hypothetical protein 616 36.14 0 609790..610821 + 343 188527428 - HPSH_03220 - hypothetical protein 617 40.73 0 610915..611901 + 328 188527429 - HPSH_03225 - transcriptional regulator 618 40.20 0 611871..612788 + 305 188527430 - HPSH_03230 - outer membrane protein 619 44.52 +1 615029..616360 - 443 188527431 - HPSH_03245 - anaerobic C4-dicarboxylate transporter 620 45.42 +1 616445..617437 + 330 188527432 - HPSH_03250 - L-asparaginase II (ansB) 621 37.37 0 617446..617643 - 65 188527433 - HPSH_03255 - hypothetical protein 622 31.48 -1 617777..617884 - 35 188527434 - HPSH_03260 - hypothetical protein 623 39.28 0 617969..618439 - 156 188527435 - HPSH_03265 - hypothetical protein 624 40.90 0 618468..618890 - 140 188527436 - HPSH_03270 - hypothetical protein 625 37.12 0 619157..619789 + 210 188527437 - HPSH_03275 - hypothetical protein 626 39.45 0 619858..621573 + 571 188527438 - HPSH_03280 - DNA polymerase III subunits gamma and tau 627 40.05 0 621570..621971 + 133 188527439 - HPSH_03285 - hypothetical protein 628 42.74 0 621984..622706 + 240 188527440 - HPSH_03290 - putative abc transporter, ATP-binding protein 629 36.79 0 622709..623953 + 414 188527441 - HPSH_03295 - RNA polymerase factor sigma-54 630 37.60 0 624274..625188 + 304 188527442 - HPSH_03300 - outer membrane protein HopH 631 39.31 0 625296..626516 - 406 188527443 - HPSH_03305 - hypothetical protein 632 43.19 +1 626961..627863 - 300 188527444 - HPSH_03310 - hypothetical protein 38.76 MEAN 4.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0