version 1.0
Helicobacter pylori Shi470, complete genome - 1..1608548 1569 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 450 39.37 0 449951..451342 - 463 188527262 gltX HPSH_02345 - glutamyl-tRNA synthetase 451 36.41 0 451461..452564 + 367 188527263 - HPSH_02350 - outer membrane protein (omp22) 452 32.84 -1 452573..455023 + 816 188527264 - HPSH_02355 - type II adenine specific methyltransferase 453 43.33 +1 455069..456868 + 599 188527265 - HPSH_02360 - hypothetical protein 454 34.52 -1 456884..457813 + 309 188527266 - HPSH_02365 - type II adenine specific DNA methyltransferase 455 35.42 0 457816..458439 + 207 188527267 - HPSH_02370 - type II restriction endonuclease 456 36.87 0 458530..459576 + 348 188527268 - HPSH_02375 - type II DNA modification enzyme (methyltransferase) 457 27.27 -2 459579..459842 + 87 188527269 - HPSH_02380 - hypothetical protein 458 34.25 -1 459889..460326 + 145 188527270 - HPSH_02385 - hypothetical protein 459 37.50 0 460342..460509 - 55 188527271 - HPSH_02390 - hypothetical protein 460 39.68 0 460559..461503 - 314 188527272 - HPSH_02395 - catalase-like protein 461 44.23 +1 461787..463373 + 528 188527273 - HPSH_02400 - outer membrane protein HofC 462 39.48 0 463443..464840 + 465 188527274 - HPSH_02405 - putative Outer membrane protein 463 40.10 0 465292..465498 - 68 188527275 - HPSH_02410 - hypothetical protein 464 37.50 0 465596..466195 + 199 188527276 - HPSH_02415 - hypothetical protein 465 37.74 0 466552..467277 - 241 188527277 - HPSH_02420 - hypothetical protein 466 43.25 +1 467410..467883 + 157 188527278 ruvC HPSH_02425 - Holliday junction resolvase 467 43.90 +1 467884..470259 - 791 188527279 - HPSH_02430 - iron-regulated outer membrane protein (frpB) 468 41.39 0 470584..472110 + 508 188527280 - HPSH_02435 - catalase 469 40.18 0 472261..473136 + 291 188527281 - HPSH_02440 - hypothetical protein 470 37.04 0 473217..473432 + 71 188527282 - HPSH_02445 - hypothetical protein 471 38.48 0 473490..473819 - 109 188527283 - HPSH_02450 - alkylphosphonate uptake protein 472 42.99 +1 474171..474905 + 244 188527284 - HPSH_02455 - CDP-diacylglycerol pyrophosphatase 473 45.76 +1 475109..477265 + 718 188527285 flgE HPSH_02460 - flagellar hook protein FlgE 474 39.83 0 477323..477676 + 117 188527286 hypA HPSH_02465 - hydrogenase nickel incorporation protein 475 33.12 -1 477683..478144 + 153 188527287 - HPSH_02470 - hypothetical protein 476 38.69 0 478144..479226 + 360 188527288 lpxB HPSH_02475 - lipid-A-disaccharide synthase 477 38.18 0 479267..479761 + 164 188527289 greA HPSH_02480 - transcription elongation factor GreA 478 41.78 0 479751..480188 + 145 188527290 dut HPSH_02485 - deoxyuridine 5'-triphosphate nucleotidohydrolase 479 34.86 0 480185..480841 + 218 188527291 - HPSH_02490 - hypothetical protein 480 37.88 0 480846..482540 + 564 188527292 - HPSH_02495 - hypothetical protein 481 39.43 0 482545..483216 + 223 188527293 - HPSH_02500 - pantothenate kinase 482 42.82 0 483207..483944 + 245 188527294 - HPSH_02505 - hypothetical protein 483 36.57 0 483931..484455 + 174 188527295 - HPSH_02510 - hypothetical protein 484 38.17 0 484464..485456 + 330 188527296 - HPSH_02515 - ADP-L-glycero-D-mannoheptose-6-epimerase (rfaD) 485 42.31 0 485453..486844 + 463 188527297 - HPSH_02520 - ADP-heptose synthase 486 40.76 0 486837..487415 + 192 188527298 - HPSH_02525 - phosphoheptose isomerase 487 40.39 0 487592..488569 - 325 188527299 - HPSH_02530 - guanosine 5'-monophosphate oxidoreductase 488 41.70 0 488818..490419 + 533 188527300 - HPSH_02535 - ABC transporter, ATP-binding protein 489 38.02 0 490416..491333 + 305 188527301 - HPSH_02540 - hypothetical protein 490 42.04 0 491371..492048 - 225 188527302 - HPSH_02545 - hypothetical protein 491 31.66 -1 492215..493168 - 317 188527303 - HPSH_02550 - type II restriction endonuclease 492 34.86 0 493165..494148 - 327 188527304 - HPSH_02555 - site-specific DNA methyltransferase 493 40.63 0 494332..495921 + 529 188527305 - HPSH_02560 - type I restriction enzyme M protein (hsdM) 494 34.59 -1 495914..497182 + 422 188527306 - HPSH_02565 - anti-codon nuclease masking agent (prrB) 495 36.30 0 497186..500185 + 999 188527307 - HPSH_02570 - type I restriction enzyme R protein 496 42.82 0 500272..501051 + 259 188527308 - HPSH_02575 - hydroxyethylthiazole kinase 497 44.07 +1 501048..501857 + 269 188527309 - HPSH_02580 - thiamine biosynthesis protein (thi) 498 41.97 0 501850..502509 + 219 188527310 - HPSH_02585 - thiamine phosphate pyrophosphorylase 499 37.40 0 502564..503301 - 245 188527311 - HPSH_02590 - hypothetical protein 500 40.77 0 503301..504578 - 425 188527312 - HPSH_02595 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 501 44.00 +1 504575..505558 - 327 188527313 - HPSH_02600 - UDP-GlcNAc C6 dehydratase 502 44.16 +1 505562..507325 - 587 188527314 - HPSH_02605 - outer membrane protein P1 503 37.22 0 507322..507939 - 205 188527315 - HPSH_02610 - hypothetical protein 504 46.20 +1 507958..508563 - 201 188527316 - HPSH_02615 - hypothetical protein 505 20.00 -2 508903..509007 - 34 188527317 - HPSH_02620 - hypothetical protein 506 40.35 0 509236..509520 - 94 188527318 - HPSH_02625 - dna-binding protein hu 507 39.54 0 509662..511047 - 461 188527319 engA HPSH_02630 - GTP-binding protein EngA 508 36.27 0 511124..512008 + 294 188527320 - HPSH_02635 - hypothetical protein 509 36.38 0 512093..512881 + 262 188527321 speE HPSH_02640 - spermidine synthase 510 37.23 0 512883..513473 + 196 188527322 coaE HPSH_02645 - dephospho-CoA kinase 511 42.95 +1 513532..514893 + 453 188527323 gatA HPSH_02650 - aspartyl/glutamyl-tRNA amidotransferase subunit A 512 43.78 +1 514903..516348 + 481 188527324 - HPSH_02655 - inositol-5-monophosphate dehydrogenase 513 40.97 0 516470..517150 + 226 188527325 - HPSH_02660 - F0F1 ATP synthase subunit A 514 29.17 -2 517147..517242 - 31 188527326 - HPSH_02665 - hypothetical protein 515 36.55 0 517470..517718 + 82 188527327 - HPSH_02670 - RNA binding protein 516 38.44 0 517921..518742 - 273 188527328 - HPSH_02675 - lipooligosaccharide 5G8 epitope biosynthesis-associated protein (lex2B) 517 44.34 +1 518909..519844 - 311 188527329 - HPSH_02680 - thioredoxin reductase 518 39.56 0 519850..520170 - 106 188527330 - HPSH_02685 - thioredoxin 519 34.78 0 520259..520603 - 114 188527331 - HPSH_02690 - hypothetical protein 520 39.89 0 520604..521869 - 421 188527332 - HPSH_02695 - homoserine dehydrogenase 521 37.09 0 521880..523664 - 594 188527333 uvrC HPSH_02700 - excinuclease ABC subunit C 522 35.06 0 523665..524126 - 153 188527334 - HPSH_02705 - hypothetical protein 523 38.89 0 524118..524297 + 59 188527335 - HPSH_02710 - hypothetical protein 524 38.47 0 524309..524950 - 213 188527336 - HPSH_02715 - osmoprotection protein (proV) 525 40.07 0 524952..526613 - 553 188527337 - HPSH_02720 - osmoprotection protein (proWX) 526 41.78 0 526793..527230 - 145 188527338 - HPSH_02725 - hypothetical protein 527 41.80 0 527234..528001 - 255 188527339 motB HPSH_02730 - flagellar motor protein MotB 528 43.54 +1 528004..528777 - 257 188527340 - HPSH_02735 - flagellar motor protein MotA 529 39.45 0 528793..529560 - 255 188527341 - HPSH_02740 - thiamin biosynthesis protein (thiF) 530 39.48 0 529561..530178 - 205 188527342 - HPSH_02745 - hypothetical protein 531 37.78 0 530311..531321 + 336 188527343 - HPSH_02750 - hypothetical protein 532 28.33 -2 531511..531630 + 39 188527344 - HPSH_02755 - hypothetical protein 533 33.59 -1 531690..532082 + 130 188527345 - HPSH_02760 - hypothetical protein 534 36.67 0 532124..532663 + 179 188527346 - HPSH_02765 - N-6 adenine methyltransferase 535 36.96 0 532672..533223 + 183 188527347 fliL HPSH_02770 - flagellar basal body-associated protein FliL 536 38.38 0 533290..533586 + 98 188527348 acpS HPSH_02775 - 4'-phosphopantetheinyl transferase 537 45.93 +1 533692..533826 + 44 188527349 - HPSH_02780 - iron(III) dicitrate transport protein (fecA) 538 37.04 0 533830..534450 - 206 188527350 - HPSH_02785 - hypothetical protein 539 36.80 0 534532..535368 + 278 188527351 - HPSH_02790 - putative lipopolysaccharide biosynthesis protein 540 39.90 0 535451..536485 + 344 188527352 - HPSH_02795 - bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein 541 40.96 0 536665..537411 + 248 188527353 - HPSH_02800 - hypothetical protein 542 40.76 0 537530..538108 + 192 188527354 ribA HPSH_02805 - GTP cyclohydrolase II 543 40.99 0 538182..538403 + 73 188527355 - HPSH_02810 - molybdopterin converting factor, subunit 1 (moaD) 544 37.67 0 538404..538841 + 145 188527356 - HPSH_02815 - molybdopterin converting factor, subunit 2 545 39.74 0 538854..539384 + 176 188527357 mogA HPSH_02820 - molybdenum cofactor biosynthesis protein 546 40.25 0 539393..539869 + 158 188527358 moaC HPSH_02825 - molybdenum cofactor biosynthesis protein C 547 37.55 0 539988..540770 + 260 188527359 - HPSH_02830 - flagellar sheath adhesin 548 36.56 0 540796..541632 + 278 188527360 - HPSH_02835 - outer membrane protein (omp18) 549 37.83 0 541745..543100 + 451 188527361 tig HPSH_02840 - trigger factor 38.76 MEAN 4.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0