version 1.0
Helicobacter pylori Shi470, complete genome - 1..1608548 1569 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 394 38.82 0 392343..392816 + 157 188527206 - HPSH_02065 - hypothetical protein 395 42.06 0 392871..393752 + 293 188527207 - HPSH_02070 - homoserine kinase 396 34.90 0 393739..393993 + 84 188527208 - HPSH_02075 - hypothetical protein 397 41.24 0 393990..396836 + 948 188527209 infB HPSH_02080 - translation initiation factor IF-2 398 38.99 0 396836..397171 + 111 188527210 rbfA HPSH_02085 - ribosome-binding factor A 399 37.64 0 397164..397604 + 146 188527211 - HPSH_02090 - hypothetical protein 400 37.65 0 397774..398886 + 370 188527212 - HPSH_02095 - hypothetical protein 401 41.07 0 399227..399898 + 223 188527213 - HPSH_02100 - putative transcriptional regulator 402 37.15 0 400230..401276 - 348 188527214 - HPSH_02105 - hypothetical protein 403 41.55 0 401304..403505 - 733 188527215 flhA HPSH_02110 - flagellar biosynthesis protein FlhA 404 38.46 0 403643..403915 + 90 188527216 rpsO HPSH_02115 - 30S ribosomal protein S15 405 36.43 0 403945..405234 + 429 188527217 - HPSH_02120 - hypothetical protein 406 41.07 0 405363..405866 + 167 188527218 - HPSH_02125 - 3-dehydroquinate dehydratase 407 41.90 0 405880..406953 + 357 188527219 - HPSH_02130 - hypothetical protein 408 35.38 0 406953..407441 + 162 188527220 - HPSH_02135 - 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (folK) 409 39.06 0 407435..408814 + 459 188527221 flhF HPSH_02140 - flagellar biosynthesis regulator FlhF 410 39.55 0 408811..409695 + 294 188527222 - HPSH_02145 - ATP-binding protein (ylxH) 411 35.24 0 409700..410014 + 104 188527223 - HPSH_02150 - hypothetical protein 412 39.04 0 410016..410768 + 250 188527224 fliA HPSH_02155 - flagellar biosynthesis sigma factor 413 40.75 0 410761..411825 + 354 188527225 fliM HPSH_02160 - flagellar motor switch protein FliM 414 39.10 0 411829..412695 + 288 188527226 - HPSH_02165 - flagellar motor switch protein FliY 415 38.92 0 412724..413260 + 178 188527227 - HPSH_02170 - hypothetical protein 416 36.73 0 413257..413757 + 166 188527228 - HPSH_02175 - hypothetical protein 417 38.19 0 413777..414229 - 150 188527229 - HPSH_02180 - ferric uptake regulation protein 418 40.65 0 414389..415564 - 391 188527230 - HPSH_02185 - recombination factor protein RarA 419 38.17 0 415561..415932 - 123 188527231 - HPSH_02190 - putative heat shock protein (hspR) 420 39.22 0 415942..416808 - 288 188527232 - HPSH_02195 - co-chaperone-curved DNA binding protein A 421 40.21 0 416976..418226 + 416 188527233 - HPSH_02200 - hypothetical protein 422 37.71 0 418248..419024 - 258 188527234 - HPSH_02205 - hypothetical protein 423 38.80 0 419350..420246 - 298 188527235 - HPSH_02210 - response regulator 424 41.36 0 420278..421498 - 406 188527236 ispDF HPSH_02215 - bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein 425 40.39 0 421520..422950 - 476 188527237 - HPSH_02220 - protease DO 426 41.86 0 422995..424437 - 480 188527238 - HPSH_02225 - amino acid permease 427 36.11 0 424632..425171 - 179 188527239 - HPSH_02230 - phosphatidylglycerophosphate synthase 428 38.26 0 425168..425776 - 202 188527240 - HPSH_02235 - hypothetical protein 429 43.22 +1 425786..426574 - 262 188527241 - HPSH_02240 - 7-alpha-hydroxysteroid dehydrogenase 430 42.30 0 426571..427473 - 300 188527242 - HPSH_02245 - dihydrodipicolinate synthase 431 40.60 0 427488..428822 - 444 188527243 - HPSH_02250 - putative zinc protease 432 38.64 0 428819..429874 - 351 188527244 - HPSH_02255 - dihydroorotate dehydrogenase 2 433 39.69 0 429911..431938 - 675 188527245 - HPSH_02260 - polyphosphate kinase 434 31.09 -1 432577..433692 - 371 188527246 - HPSH_02265 - hypothetical protein 435 37.25 0 433685..435316 - 543 188527247 - HPSH_02270 - type I restriction enzyme M protein 436 36.33 0 435309..438410 - 1033 188527248 - HPSH_02275 - type I restriction enzyme R protein (hsdR) 437 35.92 0 438458..440353 - 631 188527249 - HPSH_02280 - hypothetical protein 438 35.68 0 440379..441146 - 255 188527250 - HPSH_02285 - hypothetical protein 439 37.46 0 441156..441470 - 104 188527251 - HPSH_02290 - hypothetical protein 440 36.83 0 441472..442959 - 495 188527252 - HPSH_02295 - hypothetical protein 441 38.85 0 442971..443459 - 162 188527253 - HPSH_02300 - hypothetical protein 442 38.63 0 443444..445180 - 578 188527254 - HPSH_02305 - oligoendopeptidase F (pepF) 443 36.61 0 445277..446527 - 416 188527255 - HPSH_02310 - glutathione-regulated potassium-efflux system protein (kefB) 444 35.42 0 446680..446871 - 63 188527256 - HPSH_02315 - hypothetical protein 445 42.78 0 446855..447415 - 186 188527257 - HPSH_02320 - outer membrane protein (omp11) 446 24.18 -2 447459..447611 - 50 188527258 - HPSH_02325 - hypothetical protein 447 35.09 0 447639..448379 + 246 188527259 - HPSH_02330 - molybdenum ABC transporter ModA 448 36.89 0 448401..449075 + 224 188527260 - HPSH_02335 - molybdenum ABC transporter ModB 449 37.09 0 449072..449869 + 265 188527261 - HPSH_02340 - molybdenum ABC transporter ModD 450 39.37 0 449951..451342 - 463 188527262 gltX HPSH_02345 - glutamyl-tRNA synthetase 451 36.41 0 451461..452564 + 367 188527263 - HPSH_02350 - outer membrane protein (omp22) 452 32.84 -1 452573..455023 + 816 188527264 - HPSH_02355 - type II adenine specific methyltransferase 453 43.33 +1 455069..456868 + 599 188527265 - HPSH_02360 - hypothetical protein 454 34.52 -1 456884..457813 + 309 188527266 - HPSH_02365 - type II adenine specific DNA methyltransferase 455 35.42 0 457816..458439 + 207 188527267 - HPSH_02370 - type II restriction endonuclease 456 36.87 0 458530..459576 + 348 188527268 - HPSH_02375 - type II DNA modification enzyme (methyltransferase) 457 27.27 -2 459579..459842 + 87 188527269 - HPSH_02380 - hypothetical protein 458 34.25 -1 459889..460326 + 145 188527270 - HPSH_02385 - hypothetical protein 459 37.50 0 460342..460509 - 55 188527271 - HPSH_02390 - hypothetical protein 460 39.68 0 460559..461503 - 314 188527272 - HPSH_02395 - catalase-like protein 461 44.23 +1 461787..463373 + 528 188527273 - HPSH_02400 - outer membrane protein HofC 462 39.48 0 463443..464840 + 465 188527274 - HPSH_02405 - putative Outer membrane protein 463 40.10 0 465292..465498 - 68 188527275 - HPSH_02410 - hypothetical protein 464 37.50 0 465596..466195 + 199 188527276 - HPSH_02415 - hypothetical protein 465 37.74 0 466552..467277 - 241 188527277 - HPSH_02420 - hypothetical protein 466 43.25 +1 467410..467883 + 157 188527278 ruvC HPSH_02425 - Holliday junction resolvase 467 43.90 +1 467884..470259 - 791 188527279 - HPSH_02430 - iron-regulated outer membrane protein (frpB) 468 41.39 0 470584..472110 + 508 188527280 - HPSH_02435 - catalase 469 40.18 0 472261..473136 + 291 188527281 - HPSH_02440 - hypothetical protein 470 37.04 0 473217..473432 + 71 188527282 - HPSH_02445 - hypothetical protein 471 38.48 0 473490..473819 - 109 188527283 - HPSH_02450 - alkylphosphonate uptake protein 472 42.99 +1 474171..474905 + 244 188527284 - HPSH_02455 - CDP-diacylglycerol pyrophosphatase 473 45.76 +1 475109..477265 + 718 188527285 flgE HPSH_02460 - flagellar hook protein FlgE 474 39.83 0 477323..477676 + 117 188527286 hypA HPSH_02465 - hydrogenase nickel incorporation protein 475 33.12 -1 477683..478144 + 153 188527287 - HPSH_02470 - hypothetical protein 476 38.69 0 478144..479226 + 360 188527288 lpxB HPSH_02475 - lipid-A-disaccharide synthase 477 38.18 0 479267..479761 + 164 188527289 greA HPSH_02480 - transcription elongation factor GreA 478 41.78 0 479751..480188 + 145 188527290 dut HPSH_02485 - deoxyuridine 5'-triphosphate nucleotidohydrolase 479 34.86 0 480185..480841 + 218 188527291 - HPSH_02490 - hypothetical protein 480 37.88 0 480846..482540 + 564 188527292 - HPSH_02495 - hypothetical protein 481 39.43 0 482545..483216 + 223 188527293 - HPSH_02500 - pantothenate kinase 482 42.82 0 483207..483944 + 245 188527294 - HPSH_02505 - hypothetical protein 483 36.57 0 483931..484455 + 174 188527295 - HPSH_02510 - hypothetical protein 484 38.17 0 484464..485456 + 330 188527296 - HPSH_02515 - ADP-L-glycero-D-mannoheptose-6-epimerase (rfaD) 485 42.31 0 485453..486844 + 463 188527297 - HPSH_02520 - ADP-heptose synthase 486 40.76 0 486837..487415 + 192 188527298 - HPSH_02525 - phosphoheptose isomerase 487 40.39 0 487592..488569 - 325 188527299 - HPSH_02530 - guanosine 5'-monophosphate oxidoreductase 488 41.70 0 488818..490419 + 533 188527300 - HPSH_02535 - ABC transporter, ATP-binding protein 489 38.02 0 490416..491333 + 305 188527301 - HPSH_02540 - hypothetical protein 490 42.04 0 491371..492048 - 225 188527302 - HPSH_02545 - hypothetical protein 491 31.66 -1 492215..493168 - 317 188527303 - HPSH_02550 - type II restriction endonuclease 492 34.86 0 493165..494148 - 327 188527304 - HPSH_02555 - site-specific DNA methyltransferase 493 40.63 0 494332..495921 + 529 188527305 - HPSH_02560 - type I restriction enzyme M protein (hsdM) 38.76 MEAN 4.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0