version 1.0
Helicobacter pylori Shi470, complete genome - 1..1608548 1569 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 337 38.96 0 334312..334773 + 153 188527149 - HPSH_01780 - hypothetical protein 338 40.46 0 334789..335574 + 261 188527150 - HPSH_01785 - hypothetical protein 339 36.47 0 335564..336646 + 360 188527151 - HPSH_01790 - hypothetical protein 340 41.72 0 336702..337583 - 293 188527152 - HPSH_01795 - hypothetical protein 341 40.43 0 337583..339133 - 516 188527153 - HPSH_01800 - single-stranded-DNA specific exonuclease 342 42.18 0 339142..340758 - 538 188527154 - HPSH_01805 - CTP synthetase 343 38.16 0 341014..341676 + 220 188527155 - HPSH_01810 - hypothetical protein 344 39.44 0 341720..343423 + 567 188527156 fliF HPSH_01815 - flagellar MS-ring protein 345 41.57 0 343442..344473 + 343 188527157 fliG HPSH_01820 - flagellar motor switch protein G 346 37.22 0 344466..345236 + 256 188527158 fliH HPSH_01825 - flagellar assembly protein H 347 43.06 +1 345239..347089 + 616 188527159 - HPSH_01830 - 1-deoxy-D-xylulose-5-phosphate synthase 348 42.18 0 347086..348894 + 602 188527160 - HPSH_01835 - GTP-binding protein LepA 349 33.55 -1 348903..349832 + 309 188527161 - HPSH_01840 - DNA-cytosine methyltransferase 350 40.34 0 349825..350295 + 156 188527162 - HPSH_01845 - hypothetical protein 351 42.84 0 350770..351579 - 269 188527163 - HPSH_01850 - flagellar basal-body rod protein (flgG) 352 40.48 0 351634..352920 - 428 188527164 - HPSH_01855 - alpha-ketoglutarate permease 353 39.77 0 353083..355722 - 879 188527165 - HPSH_01860 - cell division protein 354 35.56 0 355719..358055 - 778 188527166 - HPSH_01865 - hypothetical protein 355 44.76 +1 358052..359977 - 641 188527167 - HPSH_01870 - transketolase 356 36.65 0 360024..360866 - 280 188527168 - HPSH_01875 - bifunctional riboflavin kinase/FMN adenylyltransferase 357 36.30 0 360832..361539 - 235 188527169 - HPSH_01880 - hemolysin 358 38.63 0 361539..362048 - 169 188527170 - HPSH_01885 - hypothetical protein 359 41.34 0 362121..363044 + 307 188527171 pyrB HPSH_01890 - aspartate carbamoyltransferase catalytic subunit 360 25.93 -2 363054..363134 - 26 188527172 - HPSH_01895 - hypothetical protein 361 42.64 0 363339..364778 + 479 188527173 - HPSH_01900 - hypothetical protein 362 38.89 0 364870..366525 + 551 188527174 - HPSH_01905 - multidrug resistance protein (msbA) 363 37.34 0 366519..367142 + 207 188527175 - HPSH_01910 - hypothetical protein 364 39.12 0 367146..367715 + 189 188527176 - HPSH_01915 - hypothetical protein 365 32.33 -1 367826..369016 + 396 188527177 - HPSH_01920 - hypothetical protein 366 28.36 -2 369009..369671 + 220 188527178 - HPSH_01925 - hypothetical protein 367 42.02 0 369752..370741 + 329 188527179 - HPSH_01930 - high affinity nickel transport protein 368 34.88 0 370745..371260 - 171 188527180 - HPSH_01935 - hypothetical protein 369 40.24 0 371393..372709 + 438 188527181 - HPSH_01940 - hypothetical protein 370 30.43 -2 373057..373194 + 45 188527182 - HPSH_01945 - hypothetical protein 371 37.88 0 373184..373249 + 21 188527183 - HPSH_01950 - hypothetical protein 372 31.01 -1 373334..373462 + 42 188527184 - HPSH_01955 - hypothetical protein 373 42.65 0 373835..374038 - 67 188527185 - HPSH_01960 - copper ion binding protein (copP) 374 39.98 0 374039..376264 - 741 188527186 - HPSH_01965 - copper-transporting ATPase 375 40.34 0 376261..376974 - 237 188527187 - HPSH_01970 - phosphatidylserine synthase 376 43.23 +1 377220..379118 - 632 188527188 - HPSH_01975 - cell division protein (ftsH) 377 37.68 0 379127..380116 - 329 188527189 prmA HPSH_01980 - ribosomal protein L11 methyltransferase 378 42.40 0 380117..380491 - 124 188527190 - HPSH_01985 - response regulator 379 36.15 0 380783..381385 + 200 188527191 - HPSH_01990 - outer membrane protein HorD 380 33.58 -1 381517..381924 - 135 188527192 - HPSH_01995 - hypothetical protein 381 38.53 0 381927..382157 - 76 188527193 - HPSH_02000 - hypothetical protein 382 35.94 0 382151..382687 - 178 188527194 gidB HPSH_02005 - glucose-inhibited division protein B 383 38.25 0 382684..383721 - 345 188527195 queA HPSH_02010 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase 384 39.63 0 383722..384483 - 253 188527196 - HPSH_02015 - hypothetical protein 385 37.06 0 384476..384958 - 160 188527197 - HPSH_02020 - sec-independent translocase 386 42.04 0 385026..386036 - 336 188527198 ruvB HPSH_02025 - Holliday junction DNA helicase B 387 41.33 0 386037..386849 - 270 188527199 panB HPSH_02030 - 3-methyl-2-oxobutanoate hydroxymethyltransferase 388 37.90 0 386997..387719 + 240 188527200 - HPSH_02035 - hypothetical protein 389 35.44 0 387709..388563 + 284 188527201 - HPSH_02040 - hypothetical protein 390 36.94 0 388575..389516 + 313 188527202 - HPSH_02045 - hypothetical protein 391 36.81 0 389526..390848 + 440 188527203 - HPSH_02050 - hypothetical protein 392 34.18 -1 390851..391438 + 195 188527204 minC HPSH_02055 - septum formation inhibitor 393 40.88 0 391435..392322 + 295 188527205 lpxC HPSH_02060 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 394 38.82 0 392343..392816 + 157 188527206 - HPSH_02065 - hypothetical protein 395 42.06 0 392871..393752 + 293 188527207 - HPSH_02070 - homoserine kinase 396 34.90 0 393739..393993 + 84 188527208 - HPSH_02075 - hypothetical protein 397 41.24 0 393990..396836 + 948 188527209 infB HPSH_02080 - translation initiation factor IF-2 398 38.99 0 396836..397171 + 111 188527210 rbfA HPSH_02085 - ribosome-binding factor A 399 37.64 0 397164..397604 + 146 188527211 - HPSH_02090 - hypothetical protein 400 37.65 0 397774..398886 + 370 188527212 - HPSH_02095 - hypothetical protein 401 41.07 0 399227..399898 + 223 188527213 - HPSH_02100 - putative transcriptional regulator 402 37.15 0 400230..401276 - 348 188527214 - HPSH_02105 - hypothetical protein 403 41.55 0 401304..403505 - 733 188527215 flhA HPSH_02110 - flagellar biosynthesis protein FlhA 404 38.46 0 403643..403915 + 90 188527216 rpsO HPSH_02115 - 30S ribosomal protein S15 405 36.43 0 403945..405234 + 429 188527217 - HPSH_02120 - hypothetical protein 406 41.07 0 405363..405866 + 167 188527218 - HPSH_02125 - 3-dehydroquinate dehydratase 407 41.90 0 405880..406953 + 357 188527219 - HPSH_02130 - hypothetical protein 408 35.38 0 406953..407441 + 162 188527220 - HPSH_02135 - 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (folK) 409 39.06 0 407435..408814 + 459 188527221 flhF HPSH_02140 - flagellar biosynthesis regulator FlhF 410 39.55 0 408811..409695 + 294 188527222 - HPSH_02145 - ATP-binding protein (ylxH) 411 35.24 0 409700..410014 + 104 188527223 - HPSH_02150 - hypothetical protein 412 39.04 0 410016..410768 + 250 188527224 fliA HPSH_02155 - flagellar biosynthesis sigma factor 413 40.75 0 410761..411825 + 354 188527225 fliM HPSH_02160 - flagellar motor switch protein FliM 414 39.10 0 411829..412695 + 288 188527226 - HPSH_02165 - flagellar motor switch protein FliY 415 38.92 0 412724..413260 + 178 188527227 - HPSH_02170 - hypothetical protein 416 36.73 0 413257..413757 + 166 188527228 - HPSH_02175 - hypothetical protein 417 38.19 0 413777..414229 - 150 188527229 - HPSH_02180 - ferric uptake regulation protein 418 40.65 0 414389..415564 - 391 188527230 - HPSH_02185 - recombination factor protein RarA 419 38.17 0 415561..415932 - 123 188527231 - HPSH_02190 - putative heat shock protein (hspR) 420 39.22 0 415942..416808 - 288 188527232 - HPSH_02195 - co-chaperone-curved DNA binding protein A 421 40.21 0 416976..418226 + 416 188527233 - HPSH_02200 - hypothetical protein 422 37.71 0 418248..419024 - 258 188527234 - HPSH_02205 - hypothetical protein 423 38.80 0 419350..420246 - 298 188527235 - HPSH_02210 - response regulator 424 41.36 0 420278..421498 - 406 188527236 ispDF HPSH_02215 - bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein 425 40.39 0 421520..422950 - 476 188527237 - HPSH_02220 - protease DO 426 41.86 0 422995..424437 - 480 188527238 - HPSH_02225 - amino acid permease 427 36.11 0 424632..425171 - 179 188527239 - HPSH_02230 - phosphatidylglycerophosphate synthase 428 38.26 0 425168..425776 - 202 188527240 - HPSH_02235 - hypothetical protein 429 43.22 +1 425786..426574 - 262 188527241 - HPSH_02240 - 7-alpha-hydroxysteroid dehydrogenase 430 42.30 0 426571..427473 - 300 188527242 - HPSH_02245 - dihydrodipicolinate synthase 431 40.60 0 427488..428822 - 444 188527243 - HPSH_02250 - putative zinc protease 432 38.64 0 428819..429874 - 351 188527244 - HPSH_02255 - dihydroorotate dehydrogenase 2 433 39.69 0 429911..431938 - 675 188527245 - HPSH_02260 - polyphosphate kinase 434 31.09 -1 432577..433692 - 371 188527246 - HPSH_02265 - hypothetical protein 435 37.25 0 433685..435316 - 543 188527247 - HPSH_02270 - type I restriction enzyme M protein 436 36.33 0 435309..438410 - 1033 188527248 - HPSH_02275 - type I restriction enzyme R protein (hsdR) 38.76 MEAN 4.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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