version 1.0
Helicobacter pylori Shi470, complete genome - 1..1608548 1569 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 232 44.63 +1 231380..232300 - 306 188527044 hemC HPSH_01235 - porphobilinogen deaminase 233 40.60 0 232311..234044 - 577 188527045 - HPSH_01240 - prolyl-tRNA synthetase 234 38.22 0 234048..235397 - 449 188527046 hemA HPSH_01245 - glutamyl-tRNA reductase 235 36.15 0 235397..236320 - 307 188527047 - HPSH_01250 - putative octaprenyl-diphosphate synthase 236 35.35 0 236330..236725 - 131 188527048 - HPSH_01255 - hypothetical protein 237 35.09 0 236718..237002 - 94 188527049 - HPSH_01260 - hypothetical protein 238 37.93 0 237023..237457 - 144 188527050 - HPSH_01265 - neutrophil activating protein (napA) (bacterioferritin) 239 36.39 0 237662..238807 - 381 188527051 - HPSH_01270 - histidine kinase sensor protein 240 34.91 0 238804..239121 - 105 188527052 - HPSH_01275 - hypothetical protein 241 40.98 0 239118..240137 - 339 188527053 flgI HPSH_01280 - flagellar basal body P-ring protein 242 43.07 +1 240335..241813 + 492 188527054 - HPSH_01285 - ATP-dependent RNA helicase 243 43.99 +1 241834..242922 + 362 188527055 - HPSH_01290 - hypothetical protein 244 36.30 0 242929..243468 + 179 188527056 - HPSH_01295 - hypothetical protein 245 40.81 0 243532..245082 - 516 188527057 - HPSH_01300 - oligopeptide permease ATPase protein 246 43.40 +1 245092..246114 - 340 188527058 - HPSH_01305 - oligopeptide permease integral membrane protein 247 26.26 -2 246400..246498 + 32 188527059 - HPSH_01310 - hypothetical protein 248 41.70 0 246479..247900 + 473 188527060 - HPSH_01315 - outer membrane protein (omp7) 249 41.59 0 247952..249331 + 459 188527061 - HPSH_01320 - outer membrane protein HopG 250 44.50 +1 249430..250665 + 411 188527062 - HPSH_01325 - adenylosuccinate synthetase 251 34.27 -1 250662..251090 + 142 188527063 - HPSH_01330 - hypothetical protein 252 39.85 0 251083..251742 + 219 188527064 - HPSH_01335 - conserved hypothetical secreted protein 253 40.91 0 251739..252794 + 351 188527065 - HPSH_01340 - hypothetical protein 254 41.01 0 252807..254069 + 420 188527066 xseA HPSH_01345 - exodeoxyribonuclease VII large subunit 255 30.26 -2 254088..255260 - 390 188527067 - HPSH_01350 - type II DNA modification enzyme (methyltransferase) 256 32.76 -1 256055..256750 + 231 188527068 - HPSH_01365 - Endonuclease MjaVIP 257 38.87 0 256747..257505 + 252 188527069 - HPSH_01370 - adenine specific DNA methyltransferase (hpaim) 258 41.31 0 257578..260148 + 856 188527070 - HPSH_01375 - ATP-dependent protease binding subunit (clpB) 259 40.28 0 260205..260924 + 239 188527071 - HPSH_01380 - cytochrome c biogenesis protein 260 38.17 0 260934..262070 + 378 188527072 - HPSH_01385 - dihydroorotase (pyrC) 261 39.76 0 262055..263284 + 409 188527073 - HPSH_01390 - chlorohydrolase 262 36.21 0 263345..263587 + 80 188527074 - HPSH_01395 - hypothetical protein 263 43.09 +1 263630..264910 + 426 188527075 - HPSH_01400 - conserved hypothetical ATP-binding protein 264 41.44 0 264950..265603 + 217 188527076 - HPSH_01405 - hypothetical protein 265 35.78 0 265596..266576 + 326 188527077 - HPSH_01410 - hypothetical protein 266 35.73 0 266557..267099 + 180 188527078 - HPSH_01415 - hypothetical protein 267 35.19 0 267096..267635 + 179 188527079 - HPSH_01420 - hypothetical protein 268 36.59 0 267651..268049 + 132 188527080 - HPSH_01425 - hypothetical protein 269 36.81 0 268086..269378 + 430 188527081 - HPSH_01430 - ATP-dependent nuclease 270 39.07 0 269366..269923 + 185 188527082 - HPSH_01435 - hypothetical protein 271 42.35 0 269980..270234 + 84 188527083 - HPSH_01440 - ferredoxin 272 41.58 0 270244..271698 + 484 188527084 - HPSH_01445 - guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase 273 37.78 0 271695..272705 + 336 188527085 - HPSH_01450 - lipopolysaccharide heptosyltransferase-1 274 39.61 0 272702..273688 + 328 188527086 - HPSH_01455 - lipid A biosynthesis lauroyl acyltransferase 275 43.73 +1 273744..274859 - 371 188527087 tgt HPSH_01460 - queuine tRNA-ribosyltransferase 276 37.37 0 274916..276352 + 478 188527088 - HPSH_01465 - hypothetical protein 277 37.79 0 276357..277388 + 343 188527089 aroB HPSH_01470 - 3-dehydroquinate synthase 278 37.04 0 277379..278944 + 521 188527090 - HPSH_01475 - hypothetical protein 279 39.22 0 278941..280197 + 418 188527091 - HPSH_01480 - hypothetical protein 280 38.96 0 280184..281836 + 550 188527092 - HPSH_01485 - cell division protein (ftsH) 281 36.61 0 281839..282357 + 172 188527093 - HPSH_01490 - hypothetical protein 282 39.66 0 282370..282843 + 157 188527094 - HPSH_01495 - hypothetical protein 283 41.18 0 282908..291607 + 2899 188527095 - HPSH_01500 - toxin-like outer membrane protein 284 41.05 0 291655..292872 + 405 188527096 - HPSH_01505 - diaminopimelate decarboxylase 285 32.65 -1 292877..293167 + 96 188527097 - HPSH_01510 - hypothetical protein 286 36.20 0 293180..294052 + 290 188527098 - HPSH_01515 - hypothetical protein 287 36.55 0 294053..295732 + 559 188527099 - HPSH_01520 - para-aminobenzoate synthetase (pabB) 288 44.80 +1 295918..296937 + 339 188527100 amiE HPSH_01525 - acylamide amidohydrolase 289 39.77 0 297020..299506 - 828 188527101 flgL HPSH_01530 - flagellar hook-associated protein FlgL 290 40.63 0 299726..300040 + 104 188527102 rplU HPSH_01535 - 50S ribosomal protein L21 291 46.07 +1 300055..300321 + 88 188527103 rpmA HPSH_01540 - 50S ribosomal protein L27 292 41.15 0 300438..302087 + 549 188527104 - HPSH_01545 - periplasmic dipeptide-binding protein 293 44.38 +1 302098..303102 + 334 188527105 - HPSH_01550 - dipeptide permease protein 294 45.22 +1 303102..303959 + 285 188527106 - HPSH_01555 - dipeptide permease protein 295 42.82 0 303971..304834 + 287 188527107 - HPSH_01560 - dipeptide ABC transporter, ATP-binding protein (dppD) 296 42.13 0 304831..305637 + 268 188527108 - HPSH_01565 - dipeptide transport system atp-binding protein 297 43.86 +1 305657..306739 + 360 188527109 obgE HPSH_01570 - GTPase ObgE 298 42.47 0 306781..307776 + 331 188527110 - HPSH_01575 - hypothetical protein 299 38.20 0 308024..308578 + 184 188527111 - HPSH_01580 - hypothetical protein 300 43.46 +1 308588..309880 + 430 188527112 - HPSH_01585 - glutamate-1-semialdehyde aminotransferase 301 39.15 0 309885..310142 + 85 188527113 - HPSH_01590 - hypothetical protein 302 37.04 0 310158..310562 + 134 188527114 - HPSH_01595 - hypothetical protein 303 42.26 0 310646..311530 + 294 188527115 - HPSH_01600 - hypothetical protein 304 32.76 -1 312479..313171 - 230 188527116 - HPSH_01615 - type II restriction enzyme 305 35.05 0 313182..314291 - 369 188527117 - HPSH_01620 - DNA methylase 306 43.14 +1 314387..314743 + 118 188527118 - HPSH_01625 - hypothetical protein 307 41.02 0 314743..315705 + 320 188527119 - HPSH_01630 - conserved hypothetical ATP-binding protein 308 39.70 0 315711..316856 - 381 188527120 - HPSH_01635 - nitrite extrusion protein (narK) 309 27.16 -2 317180..317260 + 26 188527121 - HPSH_01640 - hypothetical protein 310 40.61 0 317346..318101 - 251 188527122 - HPSH_01645 - hypothetical protein 311 38.25 0 318162..319787 - 541 188527123 argS HPSH_01650 - arginyl-tRNA synthetase 312 38.75 0 319790..320029 - 79 188527124 - HPSH_01655 - sec-independent protein translocase protein 313 38.33 0 320099..320719 - 206 188527125 gmk HPSH_01660 - guanylate kinase 314 39.16 0 320712..322187 - 491 188527126 - HPSH_01665 - poly E-rich protein 315 23.81 -2 322200..322325 - 41 188527127 - HPSH_01670 - hypothetical protein 316 38.12 0 322329..322871 + 180 188527128 - HPSH_01675 - membrane bound endonuclease (nuc) 317 39.57 0 322878..323615 - 245 188527129 - HPSH_01680 - outer membrane protein HorC 318 41.46 0 323745..324458 + 237 188527130 flgH HPSH_01685 - flagellar basal body L-ring protein 319 37.87 0 324476..325159 + 227 188527131 - HPSH_01690 - CMP-N-acetylneuraminic acid synthetase 320 35.85 0 325150..326022 + 290 188527132 - HPSH_01695 - CMP-N-acetylneuraminic acid synthetase (neuA) 321 32.41 -1 326019..326561 + 180 188527133 - HPSH_01700 - flagellar biosynthesis protein G 322 38.13 0 326494..327432 - 312 188527134 lpxK HPSH_01705 - tetraacyldisaccharide 4'-kinase 323 38.83 0 327429..328211 - 260 188527135 - HPSH_01710 - NH(3)-dependent NAD+ synthetase (nadE) 324 41.59 0 328458..329450 + 330 188527136 - HPSH_01715 - ketol-acid reductoisomerase 325 42.13 0 329469..330275 + 268 188527137 - HPSH_01720 - cell division inhibitor (minD) 326 36.32 0 330272..330505 + 77 188527138 minE HPSH_01725 - cell division topological specificity factor MinE 327 41.82 0 330517..331317 + 266 188527139 - HPSH_01730 - hypothetical protein 328 44.20 +1 331314..331718 + 134 188527140 - HPSH_01735 - Holliday junction resolvase-like protein 329 40.00 0 331775..331849 + 24 188527141 - HPSH_01740 - hypothetical protein 330 36.73 0 331849..332319 + 156 188527142 - HPSH_01745 - cysteine-rich protein H 331 37.76 0 332509..332847 + 112 188527143 - HPSH_01750 - hypothetical protein 38.76 MEAN 4.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0