version 1.0
Helicobacter pylori Shi470, complete genome - 1..1608548 1569 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 145 40.60 0 146964..147830 - 288 188526957 - HPSH_00770 - hypothetical protein 146 44.06 +1 147929..148972 + 347 188526958 recA HPSH_00775 - recombinase A 147 43.25 +1 148984..150264 + 426 188526959 eno HPSH_00780 - phosphopyruvate hydratase 148 38.77 0 150257..150532 + 91 188526960 - HPSH_00785 - hypothetical protein 149 38.53 0 150548..151144 + 198 188526961 - HPSH_00790 - hypothetical protein 150 39.06 0 151149..151637 + 162 188526962 aroK HPSH_00795 - shikimate kinase 151 40.44 0 151658..152614 + 318 188526963 - HPSH_00800 - hypothetical protein 152 35.40 0 152611..153723 - 370 188526964 - HPSH_00805 - putative lipopolysaccharide biosynthesis protein 153 40.74 0 153874..154791 + 305 188526965 - HPSH_00810 - hypothetical protein 154 44.70 +1 155240..155371 - 43 188526966 - HPSH_00815 - hypothetical protein 155 41.49 0 155550..156272 - 240 188526967 - HPSH_00820 - hypothetical protein 156 39.40 0 156273..157244 - 323 188526968 - HPSH_00825 - delta-aminolevulinic acid dehydratase 157 34.68 0 157267..158598 - 443 188526969 - HPSH_00830 - putative histidine kinase sensor protein 158 38.20 0 158624..159301 - 225 188526970 - HPSH_00835 - response regulator (ompR) 159 38.06 0 159535..159999 - 154 188526971 - HPSH_00840 - hypothetical protein 160 34.85 0 159990..160253 - 87 188526972 - HPSH_00845 - hypothetical protein 161 42.00 0 160286..161566 - 426 188526973 - HPSH_00850 - collagenase 162 40.28 0 161569..162288 - 239 188526974 - HPSH_00855 - hypothetical protein 163 41.76 0 162363..163454 - 363 188526975 prfB HPSH_00860 - peptide chain release factor 2 164 37.41 0 163515..164690 - 391 188526976 - HPSH_00865 - molybdopterin biosynthesis protein (moeA) 165 41.54 0 164700..165467 - 255 188526977 fliR HPSH_00870 - flagellar biosynthesis protein FliR 166 32.26 -1 165442..166188 - 248 188526978 - HPSH_00875 - hypothetical protein 167 39.22 0 166669..167568 + 299 188526979 - HPSH_00880 - putative peptidyl-prolyl cis-trans isomerase 168 43.72 +1 167585..168508 + 307 188526980 - HPSH_00885 - fructose-bisphosphate aldolase 169 45.39 +1 168530..169093 + 187 188526981 - HPSH_00890 - elongation factor P 170 32.52 -1 169315..169437 + 40 188526982 - HPSH_00895 - hypothetical protein 171 39.78 0 169636..170658 - 340 188526983 - HPSH_00900 - sialic acid synthase 172 41.43 0 170662..171303 - 213 188526984 - HPSH_00905 - ABC transporter, ATP-binding protein 173 37.33 0 171303..172577 - 424 188526985 - HPSH_00910 - apolipoprotein N-acyltransferase 174 37.25 0 172678..172830 + 50 188526986 - HPSH_00915 - hypothetical protein 175 38.75 0 172827..173528 + 233 188526987 - HPSH_00920 - hypothetical protein 176 39.84 0 173538..175043 + 501 188526988 lysS HPSH_00925 - lysyl-tRNA synthetase 177 41.57 0 175043..176293 + 416 188526989 glyA HPSH_00930 - serine hydroxymethyltransferase 178 40.70 0 176304..176846 + 180 188526990 - HPSH_00935 - hypothetical protein 179 40.99 0 176868..177677 + 269 188526991 - HPSH_00940 - hypothetical protein 180 40.86 0 177878..178063 - 61 188526992 - HPSH_00945 - hypothetical protein 181 42.16 0 179667..179768 - 33 188526993 - HPSH_00965 - hypothetical protein 182 40.60 0 179931..180467 + 178 188526994 - HPSH_00970 - hypothetical protein 183 38.44 0 180473..181981 - 502 188526995 - HPSH_00975 - conserved hypothetical secreted protein 184 45.26 +1 182003..182740 - 245 188526996 frdB HPSH_00980 - fumarate reductase iron-sulfur subunit 185 46.29 +1 182733..184877 - 714 188526997 - HPSH_00985 - fumarate reductase flavoprotein subunit 186 40.23 0 184887..185654 - 255 188526998 - HPSH_00990 - fumarate reductase cytochrome b-556 subunit 187 34.33 -1 185868..186572 + 234 188526999 tpiA HPSH_00995 - triosephosphate isomerase 188 41.43 0 186582..187409 + 275 188527000 - HPSH_01000 - enoyl-(acyl carrier protein) reductase 189 41.35 0 187419..188429 + 336 188527001 lpxD HPSH_01005 - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 190 44.21 +1 188494..189651 + 385 188527002 - HPSH_01010 - S-adenosylmethionine synthetase 191 42.75 0 189718..190131 + 137 188527003 - HPSH_01015 - nucleoside diphosphate kinase 192 39.50 0 190156..190512 + 118 188527004 - HPSH_01020 - hypothetical protein 193 42.18 0 190528..190674 + 48 188527005 rpmF HPSH_01025 - 50S ribosomal protein L32 194 43.14 +1 190742..191761 + 339 188527006 - HPSH_01030 - fatty acid/phospholipid synthesis protein 195 43.17 +1 191785..192780 + 331 188527007 - HPSH_01035 - 3-oxoacyl-(acyl carrier protein) synthase III 196 39.93 0 192802..193104 + 100 188527008 - HPSH_01040 - hypothetical protein 197 37.76 0 193388..193771 - 127 188527009 - HPSH_01045 - hypothetical protein 198 44.08 +1 197050..198156 + 368 188527010 - HPSH_01065 - ATP-binding protein 199 36.96 0 198172..199191 - 339 188527011 - HPSH_01070 - lipopolysaccharide 1,2-glycosyltransferase 200 42.98 +1 199215..199328 - 37 188527012 - HPSH_01075 - lipopolysaccharide 1,2-glycosyltransferase 201 38.89 0 199437..200840 + 467 188527013 - HPSH_01080 - hypothetical protein 202 37.62 0 200943..202808 + 621 188527014 - HPSH_01085 - heat shock protein 90 203 39.97 0 203212..203964 - 250 188527015 - HPSH_01090 - cysteine-rich protein A 204 41.67 0 204050..205201 - 383 188527016 - HPSH_01095 - succinyl-diaminopimelate desuccinylase 205 41.85 0 205212..207077 - 621 188527017 - HPSH_01100 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 206 42.62 0 207173..208831 + 552 188527018 - HPSH_01105 - sodium-dependent transporter 207 43.32 +1 208844..209644 + 266 188527019 - HPSH_01110 - CDP-diglyceride synthetase (cdsA) 208 42.91 +1 209645..210751 + 368 188527020 - HPSH_01115 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase 209 31.31 -1 210802..211098 + 98 188527021 - HPSH_01120 - hypothetical protein 210 33.84 -1 211146..211940 + 264 188527022 - HPSH_01125 - hypothetical protein 211 41.20 0 211956..212540 - 194 188527023 - HPSH_01130 - phospholipid-binding protein 212 39.61 0 212652..213113 + 153 188527024 - HPSH_01135 - hypothetical protein 213 44.76 +1 213286..214449 + 387 188527025 - HPSH_01140 - cysteine desulfurase 214 44.34 +1 214471..215451 + 326 188527026 - HPSH_01145 - nifU-like protein 215 37.61 0 215626..215859 + 77 188527027 - HPSH_01150 - hypothetical protein 216 43.06 +1 215972..217318 + 448 188527028 - HPSH_01155 - DNA repair protein RadA 217 40.66 0 217455..218492 + 345 188527029 - HPSH_01160 - bifunctional methionine sulfoxide reductase A/B protein 218 42.53 0 218739..218825 + 28 188527030 - HPSH_01165 - hypothetical protein 219 43.29 +1 218946..219779 - 277 188527031 - HPSH_01170 - hypothetical protein 220 25.79 -2 219805..219963 - 52 188527032 - HPSH_01175 - hypothetical protein 221 43.10 +1 219985..222072 - 695 188527033 - HPSH_01180 - putative Outer membrane protein 222 42.06 0 222329..223486 + 385 188527034 - HPSH_01185 - putative sulfate permease 223 41.49 0 223726..225147 - 473 188527035 - HPSH_01190 - outer membrane protein (omp6) 224 39.94 0 225372..226097 - 241 188527036 - HPSH_01195 - 3-deoxy-manno-octulosonate cytidylyltransferase 225 39.22 0 226210..227007 + 265 188527037 - HPSH_01200 - hypothetical protein 226 46.02 +1 227023..227676 + 217 188527038 - HPSH_01205 - hypothetical protein 227 40.32 0 227701..228873 + 390 188527039 - HPSH_01210 - hypothetical protein 228 39.88 0 228885..229403 + 172 188527040 - HPSH_01215 - hypothetical protein 229 30.77 -1 229499..229576 + 25 188527041 - HPSH_01220 - hypothetical protein 230 41.10 0 229851..230918 - 355 188527042 - HPSH_01225 - cysteine-rich protein E 231 36.86 0 231012..231380 - 122 188527043 - HPSH_01230 - hypothetical protein 232 44.63 +1 231380..232300 - 306 188527044 hemC HPSH_01235 - porphobilinogen deaminase 233 40.60 0 232311..234044 - 577 188527045 - HPSH_01240 - prolyl-tRNA synthetase 234 38.22 0 234048..235397 - 449 188527046 hemA HPSH_01245 - glutamyl-tRNA reductase 235 36.15 0 235397..236320 - 307 188527047 - HPSH_01250 - putative octaprenyl-diphosphate synthase 236 35.35 0 236330..236725 - 131 188527048 - HPSH_01255 - hypothetical protein 237 35.09 0 236718..237002 - 94 188527049 - HPSH_01260 - hypothetical protein 238 37.93 0 237023..237457 - 144 188527050 - HPSH_01265 - neutrophil activating protein (napA) (bacterioferritin) 239 36.39 0 237662..238807 - 381 188527051 - HPSH_01270 - histidine kinase sensor protein 240 34.91 0 238804..239121 - 105 188527052 - HPSH_01275 - hypothetical protein 241 40.98 0 239118..240137 - 339 188527053 flgI HPSH_01280 - flagellar basal body P-ring protein 242 43.07 +1 240335..241813 + 492 188527054 - HPSH_01285 - ATP-dependent RNA helicase 243 43.99 +1 241834..242922 + 362 188527055 - HPSH_01290 - hypothetical protein 244 36.30 0 242929..243468 + 179 188527056 - HPSH_01295 - hypothetical protein 38.76 MEAN 4.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0