version 1.0
Helicobacter pylori Shi470, complete genome - 1..1608548 1569 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1467 41.25 0 1500914..1502290 - 458 188528278 - HPSH_07740 - ferrodoxin-like protein 1468 38.78 0 1502270..1503058 + 262 188528279 - HPSH_07745 - hypothetical protein 1469 34.75 0 1503055..1503408 + 117 188528280 - HPSH_07750 - dihydroneopterin aldolase 1470 38.23 0 1503392..1503718 + 108 188528281 - HPSH_07755 - FrpB-like protein 1471 37.38 0 1506690..1507850 + 386 188528282 - HPSH_07770 - selenocysteine synthase 1472 39.48 0 1507938..1509125 + 395 188528283 nusA HPSH_07775 - transcription elongation factor NusA 1473 30.39 -2 1509259..1509360 + 33 188528284 - HPSH_07780 - hypothetical protein 1474 27.54 -2 1509357..1510115 - 252 188528285 - HPSH_07785 - hypothetical protein 1475 33.33 -1 1510105..1510542 - 145 188528286 - HPSH_07790 - Uncharacterized phage-associated protein 1476 30.12 -2 1510751..1512370 - 539 188528287 - HPSH_07795 - hypothetical protein 1477 27.05 -2 1512387..1512911 - 174 188528288 - HPSH_07800 - hypothetical protein 1478 36.38 0 1512912..1516751 - 1279 188528289 - HPSH_07805 - putative type II DNA modification enzyme (methyltransferase) 1479 36.04 0 1516857..1519772 - 971 188528290 - HPSH_07810 - type III restriction enzyme 1480 36.33 0 1519775..1521676 - 633 188528291 - HPSH_07815 - type III DNA modification enzyme (methyltransferase) 1481 37.71 0 1521719..1523590 - 623 188528292 - HPSH_07820 - DNA recombinase (recG) 1482 33.91 -1 1523672..1524016 + 114 188528293 - HPSH_07825 - hypothetical protein 1483 37.58 0 1524020..1524655 + 211 188528294 - HPSH_07830 - hypothetical protein 1484 36.92 0 1524652..1525404 - 250 188528295 - HPSH_07835 - exodeoxyribonuclease 1485 39.58 0 1525582..1527021 - 479 188528296 - HPSH_07840 - periplasmic competence protein 1486 19.23 -2 1527020..1527097 + 25 188528297 - HPSH_07845 - hypothetical protein 1487 34.67 0 1527148..1527222 + 24 188528298 - HPSH_07850 - hypothetical protein 1488 40.06 0 1527250..1528617 - 455 188528299 dnaA HPSH_07855 - chromosomal replication initiation protein 1489 37.07 0 1528725..1529312 + 195 188528300 - HPSH_07860 - purine nucleoside phosphorylase 1490 35.00 0 1529348..1529587 + 79 188528301 - HPSH_07865 - hypothetical protein 1491 40.86 0 1529588..1531381 + 597 188528302 - HPSH_07870 - D-fructose-6-phosphate amidotransferase 1492 40.03 0 1531402..1532028 + 208 188528303 thyX HPSH_07875 - FAD-dependent thymidylate synthase 1493 22.58 -2 1532451..1532543 + 30 188528304 - HPSH_07880 - hypothetical protein 1494 32.18 -1 1532623..1533750 - 375 188528305 - HPSH_07885 - type I R-M system specificity subunit 1495 38.00 0 1533747..1536209 - 820 188528306 - HPSH_07890 - type I restriction enzyme M protein (hsdM) 1496 36.02 0 1536280..1539255 + 991 188528307 - HPSH_07895 - type I restriction enzyme R protein (hsdR) 1497 36.16 0 1539255..1539962 + 235 188528308 - HPSH_07900 - hypothetical protein 1498 45.65 +1 1540052..1542577 - 841 188528309 - HPSH_07905 - iron(III) dicitrate transport protein (fecA) 1499 29.56 -2 1542938..1543096 + 52 188528310 - HPSH_07910 - hypothetical protein 1500 40.17 0 1543152..1544087 - 311 188528311 - HPSH_07915 - arginase (rocF) 1501 45.49 +1 1544291..1545433 + 380 188528312 - HPSH_07920 - alanine dehydrogenase 1502 36.75 0 1545551..1547248 + 565 188528313 - HPSH_07925 - hypothetical protein 1503 41.43 0 1547259..1547987 - 242 188528314 - HPSH_07930 - putative outer membrane protein 1504 40.23 0 1548173..1549027 + 284 188528315 - HPSH_07935 - inorganic polyphosphate/ATP-NAD kinase 1505 39.30 0 1549040..1550614 + 524 188528316 - HPSH_07940 - DNA repair protein 1506 32.19 -1 1550611..1551918 + 435 188528317 - HPSH_07945 - fibronectin/fibrinogen-binding protein 1507 41.08 0 1551937..1552233 + 98 188528318 - HPSH_07950 - hypothetical protein 1508 35.20 0 1552564..1552884 + 106 188528319 - HPSH_07955 - hypothetical protein 1509 33.94 -1 1552923..1553252 + 109 188528320 - HPSH_07960 - hypothetical protein 1510 29.29 -2 1553351..1553548 + 65 188528321 - HPSH_07965 - hypothetical protein 1511 40.28 0 1553522..1554385 - 287 188528322 - HPSH_07970 - DNA polymerase III subunit epsilon 1512 42.05 0 1554363..1555016 - 217 188528323 - HPSH_07975 - ribulose-phosphate 3-epimerase 1513 38.49 0 1555087..1555959 + 290 188528324 - HPSH_07980 - fructose-1,6-bisphosphatase 1514 40.20 0 1555959..1556162 + 67 188528325 - HPSH_07985 - hypothetical protein 1515 35.23 0 1556175..1557071 + 298 188528326 - HPSH_07990 - putative type II methylase protein 1516 34.02 -1 1557064..1557795 + 243 188528327 - HPSH_07995 - hypothetical protein 1517 33.33 -1 1557885..1558337 - 150 188528328 - HPSH_08000 - hypothetical protein 1518 40.17 0 1558389..1559456 - 355 188528329 tsf HPSH_08005 - elongation factor Ts 1519 38.99 0 1559456..1560250 - 264 188528330 rpsB HPSH_08010 - 30S ribosomal protein S2 1520 32.18 -1 1560343..1560429 + 28 188528331 - HPSH_08015 - hypothetical protein 1521 38.63 0 1560501..1563350 + 949 188528332 - HPSH_08020 - helicase 1522 41.63 0 1563341..1564690 + 449 188528333 - HPSH_08025 - Na+/H+ antiporter 1523 40.14 0 1564738..1565031 + 97 188528334 yajC HPSH_08030 - preprotein translocase subunit YajC 1524 43.35 +1 1565031..1566608 + 525 188528335 secD HPSH_08035 - preprotein translocase subunit SecD 1525 39.71 0 1566617..1567588 + 323 188528336 secF HPSH_08040 - preprotein translocase subunit SecF 1526 41.00 0 1567598..1567936 + 112 188528337 - HPSH_08045 - hypothetical protein 1527 40.19 0 1567946..1570366 + 806 188528338 leuS HPSH_08050 - leucyl-tRNA synthetase 1528 39.77 0 1570363..1570875 + 170 188528339 - HPSH_08055 - hypothetical protein 1529 37.44 0 1570865..1572034 + 389 188528340 - HPSH_08060 - folylpolyglutamate synthase 1530 39.16 0 1572034..1572960 + 308 209406224 - HPSH_08065 - tox-R activated gene 1531 40.92 0 1572969..1573904 + 311 188528341 - HPSH_08075 - toxR-activated gene (tagE) 1532 44.13 +1 1573919..1574233 + 104 188528342 - HPSH_08080 - hypothetical protein 1533 39.53 0 1574237..1577236 + 999 188528343 - HPSH_08085 - transcription-repair coupling factor 1534 45.04 +1 1577361..1577864 + 167 188528344 - HPSH_08090 - ubiquinol cytochrome c oxidoreductase, Rieske 2Fe-2S subunit (fbcF) 1535 43.26 +1 1577875..1579113 + 412 188528345 - HPSH_08095 - ubiquinol cytochrome c oxidoreductase, cytochrome b subunit (fbcH) 1536 43.01 +1 1579110..1579967 + 285 188528346 - HPSH_08100 - ubiquinol cytochrome c oxidoreductase, cytochrome c1 1537 33.33 -1 1580172..1580507 - 111 188528347 - HPSH_08105 - hypothetical protein 1538 39.56 0 1580949..1582796 - 615 188528348 - HPSH_08110 - cell division protein 1539 41.21 0 1582952..1583281 - 109 188528349 fliE HPSH_08115 - flagellar hook-basal body protein FliE 1540 45.47 +1 1583409..1583894 - 161 188528350 flgC HPSH_08120 - flagellar basal body rod protein FlgC 1541 38.30 0 1583907..1584329 - 140 188528351 flgB HPSH_08125 - flagellar basal body rod protein FlgB 1542 44.64 +1 1584538..1585704 + 388 188528352 - HPSH_08130 - putative rod shape-determining protein 1543 39.22 0 1585728..1586729 - 333 188528353 - HPSH_08135 - hypothetical protein 1544 40.28 0 1586928..1587935 - 335 188528354 - HPSH_08140 - iron(III) ABC transporter, periplasmic iron-binding protein (ceuE) 1545 40.37 0 1588174..1588770 + 198 188528355 - HPSH_08145 - putative peroxidase 1546 40.93 0 1588915..1589730 + 271 188528356 - HPSH_08150 - outer membrane protein 1547 41.05 0 1589798..1591573 - 591 188528357 - HPSH_08155 - penicillin-binding protein 2 (pbp2) 1548 32.43 -1 1591554..1591997 - 147 188528358 - HPSH_08160 - hypothetical protein 1549 39.39 0 1592010..1592636 - 208 188528359 engB HPSH_08165 - GTPase EngB 1550 40.50 0 1592633..1593190 - 185 188528360 - HPSH_08170 - hypothetical protein 1551 36.87 0 1593190..1593783 - 197 188528361 - HPSH_08175 - hypothetical protein 1552 41.01 0 1593758..1594252 - 164 188528362 - HPSH_08180 - hypothetical protein 1553 42.19 0 1594249..1595196 - 315 188528363 - HPSH_08185 - rare lipoprotein A (rlpA) 1554 39.17 0 1595196..1596308 - 370 188528364 - HPSH_08190 - putative regulatory protein 1555 39.48 0 1596409..1597173 - 254 188528365 - HPSH_08195 - DNAse 1556 40.10 0 1597248..1597868 + 206 188528366 - HPSH_08200 - riboflavin synthase subunit alpha 1557 45.05 +1 1597869..1598141 + 90 188528367 - HPSH_08205 - FlhB-related flagellar biosynthesis protein 1558 39.43 0 1598163..1599146 + 327 188528368 - HPSH_08210 - ABC transporter, ATP-binding protein 1559 41.05 0 1599148..1599795 + 215 188528369 - HPSH_08215 - ABC transporter, permease protein 1560 33.56 -1 1599984..1600415 - 143 188528370 - HPSH_08220 - hypothetical protein 1561 47.40 +2 1600425..1601021 - 198 188528371 - HPSH_08225 - hypothetical protein 1562 39.74 0 1601021..1602019 - 332 188528372 - HPSH_08230 - undecaprenyl phosphate N-acetylglucosaminyltransferase 1563 38.53 0 1602164..1602952 + 262 188528373 - HPSH_08235 - pyridoxal phosphate biosynthetic protein PdxJ 1564 42.75 0 1602954..1603877 + 307 188528374 pdxA HPSH_08240 - 4-hydroxythreonine-4-phosphate dehydrogenase 1565 40.86 0 1603941..1604963 + 340 188528375 - HPSH_08245 - O-sialoglycoprotein endopeptidase 1566 47.02 +2 1605142..1605930 + 262 188528376 flgG HPSH_08250 - flagellar basal body rod protein FlgG 38.76 MEAN 4.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0