version 1.0
Helicobacter pylori Shi470, complete genome - 1..1608548 1569 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1398 38.72 0 1432988..1433767 - 259 188528210 - HPSH_07370 - hypothetical protein 1399 44.38 +1 1433891..1434379 + 162 188528211 - HPSH_07375 - peptidyl-prolyl cis-trans isomerase B, cyclosporin-type rotamase (ppi) 1400 41.99 0 1434397..1434627 + 76 188528212 - HPSH_07380 - carbon storage regulator 1401 40.05 0 1434627..1435430 + 267 188528213 - HPSH_07385 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1402 32.90 -1 1435427..1435885 + 152 188528214 smpB HPSH_07390 - SsrA-binding protein 1403 41.50 0 1435888..1436340 + 150 188528215 - HPSH_07395 - biopolymer transport protein 1404 35.57 0 1436351..1436752 + 133 188528216 - HPSH_07400 - biopolymer transport protein 1405 45.93 +1 1436826..1436960 + 44 188528217 rpmH HPSH_07405 - 50S ribosomal protein L34 1406 37.45 0 1436920..1437405 + 161 188528218 - HPSH_07410 - ribonuclease P, protein component (rnpA) 1407 42.30 0 1437392..1437748 + 118 188528219 - HPSH_07415 - hypothetical protein 1408 40.59 0 1437754..1439394 + 546 188528220 - HPSH_07420 - putative inner membrane protein translocase component YidC 1409 36.97 0 1439394..1440191 + 265 188528221 - HPSH_07425 - hypothetical protein 1410 38.95 0 1440184..1441536 + 450 188528222 trmE HPSH_07430 - tRNA modification GTPase TrmE 1411 42.06 0 1441740..1443962 + 740 188528223 - HPSH_07435 - putative Outer membrane protein 1412 39.58 0 1443959..1444102 - 47 188528224 - HPSH_07440 - hypothetical protein 1413 38.16 0 1444482..1445393 - 303 188528225 - HPSH_07445 - hypothetical protein 1414 40.35 0 1445403..1445744 - 113 188528226 - HPSH_07450 - hypothetical protein 1415 39.02 0 1445752..1446279 - 175 188528227 - HPSH_07455 - membrane-associated lipoprotein 1416 41.39 0 1446303..1446935 - 210 188528228 - HPSH_07460 - hypothetical protein 1417 41.27 0 1447292..1447606 - 104 188528229 - HPSH_07465 - thioredoxin 1418 40.83 0 1447661..1448434 - 257 188528230 - HPSH_07470 - hypothetical protein 1419 41.47 0 1448431..1452066 - 1211 188528231 dnaE HPSH_07475 - DNA polymerase III subunit alpha 1420 41.60 0 1452214..1453266 + 350 188528232 - HPSH_07480 - cytochrome c551 peroxidase 1421 37.78 0 1453269..1453358 - 29 188528233 - HPSH_07485 - hypothetical protein 1422 37.07 0 1453443..1454030 - 195 188528234 - HPSH_07490 - putative secreted motility protein 1423 40.71 0 1454049..1454726 - 225 188528235 - HPSH_07495 - hypothetical protein 1424 39.34 0 1454729..1455544 - 271 188528236 - HPSH_07500 - ABC transport system substrate binding protein 1425 43.35 +1 1455529..1456317 - 262 188528237 - HPSH_07505 - ABC transporter ATP-binding protein 1426 40.30 0 1456314..1457447 - 377 188528238 - HPSH_07510 - hypothetical protein 1427 39.51 0 1457581..1458276 + 231 188528239 - HPSH_07515 - outer membrane protein 1428 46.04 +1 1458281..1459303 - 340 188528240 - HPSH_07520 - branched-chain amino acid aminotransferase 1429 42.84 0 1459354..1460100 - 248 188528241 - HPSH_07525 - outer membrane protein (omp31) 1430 38.55 0 1460215..1462896 - 893 188528242 - HPSH_07530 - DNA polymerase I (polA) 1431 37.78 0 1463549..1466224 - 891 209406225 - HPSH_07540 - type II restriction modification enzyme methyltransferase 1432 41.67 0 1466257..1466832 - 191 188528243 - HPSH_07545 - hypothetical protein 1433 40.80 0 1466820..1467395 - 191 188528244 tdk HPSH_07550 - thymidylate kinase 1434 40.93 0 1467397..1467870 - 157 188528245 coaD HPSH_07555 - phosphopantetheine adenylyltransferase 1435 45.74 +1 1467870..1468433 - 187 188528246 - HPSH_07560 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1436 31.43 -1 1468414..1468518 + 34 188528247 - HPSH_07565 - hypothetical protein 1437 38.66 0 1468443..1469099 - 218 188528248 flgA HPSH_07570 - flagellar basal body P-ring biosynthesis protein FlgA 1438 39.88 0 1469096..1471141 - 681 188528249 - HPSH_07575 - DNA helicase II 1439 39.41 0 1471141..1473675 - 844 188528250 - HPSH_07580 - hypothetical protein 1440 41.11 0 1473685..1474932 - 415 188528251 - HPSH_07585 - seryl-tRNA synthetase 1441 41.73 0 1474933..1475730 - 265 188528252 - HPSH_07590 - hypothetical protein 1442 38.70 0 1475734..1475994 - 86 188528253 - HPSH_07595 - hypothetical protein 1443 39.00 0 1476004..1476744 - 246 188528254 ubiE HPSH_07600 - ubiquinone/menaquinone biosynthesis methyltransferase 1444 39.37 0 1476754..1477200 - 148 188528255 - HPSH_07605 - hypothetical protein 1445 40.31 0 1477211..1477783 - 190 188528256 - HPSH_07610 - hypothetical protein 1446 39.88 0 1477770..1478900 - 376 188528257 - HPSH_07615 - hypothetical protein 1447 40.40 0 1478897..1479985 - 362 188528258 - HPSH_07620 - hypothetical protein 1448 43.74 +1 1480006..1480995 - 329 188528259 - HPSH_07625 - conserved hypothetical secreted protein 1449 40.97 0 1481007..1482539 - 510 188528260 - HPSH_07630 - lipase-like protein 1450 42.74 0 1482536..1483885 - 449 188528261 - HPSH_07635 - hypothetical protein 1451 43.26 +1 1483984..1485585 - 533 188528262 - HPSH_07640 - phosphate permease 1452 37.78 0 1485725..1485994 + 89 188528263 - HPSH_07645 - conserved hypothetical nifU-like protein 1453 35.95 0 1486007..1486618 + 203 188528264 - HPSH_07650 - hypothetical protein 1454 37.72 0 1486622..1487965 + 447 188528265 murE HPSH_07655 - UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 1455 38.38 0 1487969..1488919 + 316 188528266 - HPSH_07660 - transaldolase 1456 38.18 0 1488974..1489510 + 178 188528267 - HPSH_07665 - 50S ribosomal protein L25/general stress protein Ctc 1457 37.08 0 1489520..1490080 + 186 188528268 - HPSH_07670 - peptidyl-tRNA hydrolase 1458 37.36 0 1490135..1491202 + 355 188528269 - HPSH_07675 - hypothetical protein 1459 31.61 -1 1492300..1492473 + 57 188528270 - HPSH_07690 - restriction endonuclease 1460 27.78 -2 1493654..1493761 - 35 188528271 - HPSH_07705 - hypothetical protein 1461 36.99 0 1493868..1494305 + 145 188528272 - HPSH_07710 - hypothetical protein 1462 39.20 0 1494302..1496638 - 778 188528273 - HPSH_07715 - putative cation transporting P-type ATPase 1463 38.63 0 1496664..1497380 - 238 188528274 - HPSH_07720 - hypothetical protein 1464 40.58 0 1497362..1498396 - 344 188528275 - HPSH_07725 - riboflavin biosynthesis protein (ribG) 1465 43.68 +1 1498393..1499619 - 408 188528276 - HPSH_07730 - sodium/glutamate symport carrier protein/glutamate permease 1466 41.93 0 1499753..1500904 + 383 188528277 - HPSH_07735 - conserved hypothetical ATP-binding protein 1467 41.25 0 1500914..1502290 - 458 188528278 - HPSH_07740 - ferrodoxin-like protein 1468 38.78 0 1502270..1503058 + 262 188528279 - HPSH_07745 - hypothetical protein 1469 34.75 0 1503055..1503408 + 117 188528280 - HPSH_07750 - dihydroneopterin aldolase 1470 38.23 0 1503392..1503718 + 108 188528281 - HPSH_07755 - FrpB-like protein 1471 37.38 0 1506690..1507850 + 386 188528282 - HPSH_07770 - selenocysteine synthase 1472 39.48 0 1507938..1509125 + 395 188528283 nusA HPSH_07775 - transcription elongation factor NusA 1473 30.39 -2 1509259..1509360 + 33 188528284 - HPSH_07780 - hypothetical protein 1474 27.54 -2 1509357..1510115 - 252 188528285 - HPSH_07785 - hypothetical protein 1475 33.33 -1 1510105..1510542 - 145 188528286 - HPSH_07790 - Uncharacterized phage-associated protein 1476 30.12 -2 1510751..1512370 - 539 188528287 - HPSH_07795 - hypothetical protein 1477 27.05 -2 1512387..1512911 - 174 188528288 - HPSH_07800 - hypothetical protein 1478 36.38 0 1512912..1516751 - 1279 188528289 - HPSH_07805 - putative type II DNA modification enzyme (methyltransferase) 1479 36.04 0 1516857..1519772 - 971 188528290 - HPSH_07810 - type III restriction enzyme 1480 36.33 0 1519775..1521676 - 633 188528291 - HPSH_07815 - type III DNA modification enzyme (methyltransferase) 1481 37.71 0 1521719..1523590 - 623 188528292 - HPSH_07820 - DNA recombinase (recG) 1482 33.91 -1 1523672..1524016 + 114 188528293 - HPSH_07825 - hypothetical protein 1483 37.58 0 1524020..1524655 + 211 188528294 - HPSH_07830 - hypothetical protein 1484 36.92 0 1524652..1525404 - 250 188528295 - HPSH_07835 - exodeoxyribonuclease 1485 39.58 0 1525582..1527021 - 479 188528296 - HPSH_07840 - periplasmic competence protein 1486 19.23 -2 1527020..1527097 + 25 188528297 - HPSH_07845 - hypothetical protein 1487 34.67 0 1527148..1527222 + 24 188528298 - HPSH_07850 - hypothetical protein 1488 40.06 0 1527250..1528617 - 455 188528299 dnaA HPSH_07855 - chromosomal replication initiation protein 1489 37.07 0 1528725..1529312 + 195 188528300 - HPSH_07860 - purine nucleoside phosphorylase 1490 35.00 0 1529348..1529587 + 79 188528301 - HPSH_07865 - hypothetical protein 1491 40.86 0 1529588..1531381 + 597 188528302 - HPSH_07870 - D-fructose-6-phosphate amidotransferase 1492 40.03 0 1531402..1532028 + 208 188528303 thyX HPSH_07875 - FAD-dependent thymidylate synthase 1493 22.58 -2 1532451..1532543 + 30 188528304 - HPSH_07880 - hypothetical protein 1494 32.18 -1 1532623..1533750 - 375 188528305 - HPSH_07885 - type I R-M system specificity subunit 1495 38.00 0 1533747..1536209 - 820 188528306 - HPSH_07890 - type I restriction enzyme M protein (hsdM) 1496 36.02 0 1536280..1539255 + 991 188528307 - HPSH_07895 - type I restriction enzyme R protein (hsdR) 1497 36.16 0 1539255..1539962 + 235 188528308 - HPSH_07900 - hypothetical protein 38.76 MEAN 4.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0