version 1.0
Helicobacter pylori Shi470, complete genome - 1..1608548 1569 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1350 46.07 +1 1381715..1382758 - 347 188528162 - HPSH_07105 - rod shape-determining protein 1351 40.98 0 1382801..1384147 - 448 188528163 clpX HPSH_07110 - ATP-dependent protease ATP-binding subunit 1352 42.44 0 1384149..1384961 - 270 188528164 - HPSH_07115 - UDP-N-acetylglucosamine acyltransferase 1353 41.46 0 1384964..1385443 - 159 188528165 fabZ HPSH_07120 - (3R)-hydroxymyristoyl-ACP dehydratase 1354 37.95 0 1385626..1386015 - 129 188528166 - HPSH_07125 - flagellar assembly protein FliW 1355 33.33 -1 1386232..1386378 + 48 188528167 - HPSH_07130 - hypothetical protein 1356 37.10 0 1386421..1387083 + 220 188528168 - HPSH_07135 - competence lipoprotein 1357 41.19 0 1387124..1389592 + 822 188528169 - HPSH_07140 - ATP-dependent protease 1358 42.03 0 1389601..1390428 + 275 188528170 - HPSH_07145 - prephenate dehydrogenase 1359 36.40 0 1390714..1391562 - 282 188528171 - HPSH_07150 - putative endonuclease 1360 32.52 -1 1391687..1393405 - 572 188528172 - HPSH_07155 - putative type III restriction enzyme M protein 1361 43.46 +1 1396155..1397003 + 282 188528173 - HPSH_07170 - biotin synthase 1362 36.97 0 1397003..1397881 + 292 188528174 - HPSH_07175 - putative ribonuclease N 1363 27.34 -2 1402463..1402729 - 88 188528175 - HPSH_07180 - hypothetical protein 1364 31.47 -1 1403060..1404400 - 446 188528176 - HPSH_07185 - hypothetical protein 1365 37.47 0 1404416..1404778 - 120 188528177 - HPSH_07190 - hypothetical protein 1366 33.91 -1 1404799..1405491 - 230 188528178 - HPSH_07195 - hypothetical protein 1367 39.91 0 1405754..1406194 - 146 188528179 - HPSH_07200 - 7-cyano-7-deazaguanine reductase 1368 38.01 0 1406253..1406594 + 113 188528180 - HPSH_07205 - hypothetical protein 1369 38.51 0 1406665..1407495 + 276 188528181 miaA HPSH_07210 - tRNA delta(2)-isopentenylpyrophosphate transferase 1370 38.68 0 1407500..1408603 + 367 188528182 - HPSH_07215 - lipopolysaccharide 1,2-glucosyltransferase 1371 40.64 0 1410160..1410939 - 259 188528183 murB HPSH_07235 - UDP-N-acetylenolpyruvoylglucosamine reductase 1372 38.49 0 1410943..1411194 - 83 188528184 fliQ HPSH_07240 - flagellar biosynthesis protein FliQ 1373 45.29 +1 1411220..1412524 - 434 188528185 fliI HPSH_07245 - flagellum-specific ATP synthase 1374 42.40 0 1412525..1413439 - 304 188528186 - HPSH_07250 - type IV secretion system ATPase 1375 40.79 0 1413456..1416218 - 920 188528187 ileS HPSH_07255 - isoleucyl-tRNA synthetase 1376 42.64 0 1416253..1416510 - 85 188528188 - HPSH_07260 - hypothetical protein 1377 42.67 0 1416612..1417232 + 206 188528189 - HPSH_07265 - hypothetical protein 1378 47.06 +2 1417498..1417752 - 84 188528190 - HPSH_07270 - hypothetical protein 1379 38.18 0 1417939..1419012 - 357 188528191 - HPSH_07275 - hypothetical protein 1380 43.43 +1 1419009..1419998 - 329 188528192 - HPSH_07280 - polysialic acid capsule expression protein (kpsF) 1381 42.88 +1 1419982..1422075 - 697 188528193 - HPSH_07285 - conserved hypothetical ATP-binding protein 1382 38.36 0 1422109..1422924 - 271 188528194 ksgA HPSH_07290 - dimethyladenosine transferase 1383 23.66 -2 1423717..1423809 + 30 188528195 - HPSH_07295 - hypothetical protein 1384 32.43 -1 1423889..1424998 - 369 188528196 - HPSH_07300 - type I R-M system specificity subunit 1385 39.00 0 1425011..1425892 - 293 188528197 - HPSH_07305 - formyltetrahydrofolate hydrolase (purU) 1386 41.30 0 1425895..1426773 - 292 188528198 - HPSH_07310 - protease IV (PspA) 1387 38.83 0 1426844..1427116 + 90 188528199 - HPSH_07315 - hypothetical protein 1388 29.09 -2 1427160..1427324 - 54 188528200 - HPSH_07320 - hypothetical protein 1389 34.67 0 1427349..1428023 + 224 188528201 - HPSH_07325 - hypothetical protein 1390 41.32 0 1428032..1428319 + 95 188528202 - HPSH_07330 - hypothetical protein 1391 35.80 0 1428309..1428470 + 53 188528203 - HPSH_07335 - hypothetical protein 1392 27.22 -2 1428489..1428962 - 157 188528204 - HPSH_07340 - hypothetical protein 1393 42.62 0 1428967..1429149 + 60 188528205 - HPSH_07345 - hypothetical protein 1394 31.35 -1 1429495..1429797 + 100 188528206 - HPSH_07350 - hypothetical protein 1395 34.82 0 1429816..1430352 + 178 188528207 - HPSH_07355 - hypothetical protein 1396 35.19 0 1430336..1430443 + 35 188528208 - HPSH_07360 - hypothetical protein 1397 25.00 -2 1430830..1430925 - 31 188528209 - HPSH_07365 - hypothetical protein 1398 38.72 0 1432988..1433767 - 259 188528210 - HPSH_07370 - hypothetical protein 1399 44.38 +1 1433891..1434379 + 162 188528211 - HPSH_07375 - peptidyl-prolyl cis-trans isomerase B, cyclosporin-type rotamase (ppi) 1400 41.99 0 1434397..1434627 + 76 188528212 - HPSH_07380 - carbon storage regulator 1401 40.05 0 1434627..1435430 + 267 188528213 - HPSH_07385 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1402 32.90 -1 1435427..1435885 + 152 188528214 smpB HPSH_07390 - SsrA-binding protein 1403 41.50 0 1435888..1436340 + 150 188528215 - HPSH_07395 - biopolymer transport protein 1404 35.57 0 1436351..1436752 + 133 188528216 - HPSH_07400 - biopolymer transport protein 1405 45.93 +1 1436826..1436960 + 44 188528217 rpmH HPSH_07405 - 50S ribosomal protein L34 1406 37.45 0 1436920..1437405 + 161 188528218 - HPSH_07410 - ribonuclease P, protein component (rnpA) 1407 42.30 0 1437392..1437748 + 118 188528219 - HPSH_07415 - hypothetical protein 1408 40.59 0 1437754..1439394 + 546 188528220 - HPSH_07420 - putative inner membrane protein translocase component YidC 1409 36.97 0 1439394..1440191 + 265 188528221 - HPSH_07425 - hypothetical protein 1410 38.95 0 1440184..1441536 + 450 188528222 trmE HPSH_07430 - tRNA modification GTPase TrmE 1411 42.06 0 1441740..1443962 + 740 188528223 - HPSH_07435 - putative Outer membrane protein 1412 39.58 0 1443959..1444102 - 47 188528224 - HPSH_07440 - hypothetical protein 1413 38.16 0 1444482..1445393 - 303 188528225 - HPSH_07445 - hypothetical protein 1414 40.35 0 1445403..1445744 - 113 188528226 - HPSH_07450 - hypothetical protein 1415 39.02 0 1445752..1446279 - 175 188528227 - HPSH_07455 - membrane-associated lipoprotein 1416 41.39 0 1446303..1446935 - 210 188528228 - HPSH_07460 - hypothetical protein 1417 41.27 0 1447292..1447606 - 104 188528229 - HPSH_07465 - thioredoxin 1418 40.83 0 1447661..1448434 - 257 188528230 - HPSH_07470 - hypothetical protein 1419 41.47 0 1448431..1452066 - 1211 188528231 dnaE HPSH_07475 - DNA polymerase III subunit alpha 1420 41.60 0 1452214..1453266 + 350 188528232 - HPSH_07480 - cytochrome c551 peroxidase 1421 37.78 0 1453269..1453358 - 29 188528233 - HPSH_07485 - hypothetical protein 1422 37.07 0 1453443..1454030 - 195 188528234 - HPSH_07490 - putative secreted motility protein 1423 40.71 0 1454049..1454726 - 225 188528235 - HPSH_07495 - hypothetical protein 1424 39.34 0 1454729..1455544 - 271 188528236 - HPSH_07500 - ABC transport system substrate binding protein 1425 43.35 +1 1455529..1456317 - 262 188528237 - HPSH_07505 - ABC transporter ATP-binding protein 1426 40.30 0 1456314..1457447 - 377 188528238 - HPSH_07510 - hypothetical protein 1427 39.51 0 1457581..1458276 + 231 188528239 - HPSH_07515 - outer membrane protein 1428 46.04 +1 1458281..1459303 - 340 188528240 - HPSH_07520 - branched-chain amino acid aminotransferase 1429 42.84 0 1459354..1460100 - 248 188528241 - HPSH_07525 - outer membrane protein (omp31) 1430 38.55 0 1460215..1462896 - 893 188528242 - HPSH_07530 - DNA polymerase I (polA) 1431 37.78 0 1463549..1466224 - 891 209406225 - HPSH_07540 - type II restriction modification enzyme methyltransferase 1432 41.67 0 1466257..1466832 - 191 188528243 - HPSH_07545 - hypothetical protein 1433 40.80 0 1466820..1467395 - 191 188528244 tdk HPSH_07550 - thymidylate kinase 1434 40.93 0 1467397..1467870 - 157 188528245 coaD HPSH_07555 - phosphopantetheine adenylyltransferase 1435 45.74 +1 1467870..1468433 - 187 188528246 - HPSH_07560 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1436 31.43 -1 1468414..1468518 + 34 188528247 - HPSH_07565 - hypothetical protein 1437 38.66 0 1468443..1469099 - 218 188528248 flgA HPSH_07570 - flagellar basal body P-ring biosynthesis protein FlgA 1438 39.88 0 1469096..1471141 - 681 188528249 - HPSH_07575 - DNA helicase II 1439 39.41 0 1471141..1473675 - 844 188528250 - HPSH_07580 - hypothetical protein 1440 41.11 0 1473685..1474932 - 415 188528251 - HPSH_07585 - seryl-tRNA synthetase 1441 41.73 0 1474933..1475730 - 265 188528252 - HPSH_07590 - hypothetical protein 1442 38.70 0 1475734..1475994 - 86 188528253 - HPSH_07595 - hypothetical protein 1443 39.00 0 1476004..1476744 - 246 188528254 ubiE HPSH_07600 - ubiquinone/menaquinone biosynthesis methyltransferase 1444 39.37 0 1476754..1477200 - 148 188528255 - HPSH_07605 - hypothetical protein 1445 40.31 0 1477211..1477783 - 190 188528256 - HPSH_07610 - hypothetical protein 1446 39.88 0 1477770..1478900 - 376 188528257 - HPSH_07615 - hypothetical protein 1447 40.40 0 1478897..1479985 - 362 188528258 - HPSH_07620 - hypothetical protein 1448 43.74 +1 1480006..1480995 - 329 188528259 - HPSH_07625 - conserved hypothetical secreted protein 1449 40.97 0 1481007..1482539 - 510 188528260 - HPSH_07630 - lipase-like protein 38.76 MEAN 4.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0