version 1.0
Helicobacter pylori Shi470, complete genome - 1..1608548 1569 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1287 34.83 0 1323101..1323301 - 66 188528099 - HPSH_06780 - 50S ribosomal protein L29 1288 42.96 +1 1323288..1323713 - 141 188528100 rplP HPSH_06785 - 50S ribosomal protein L16 1289 44.40 +1 1323716..1324420 - 234 188528101 rpsC HPSH_06790 - 30S ribosomal protein S3 1290 43.63 +1 1324424..1324792 - 122 188528102 rplV HPSH_06795 - 50S ribosomal protein L22 1291 39.36 0 1324802..1325083 - 93 188528103 rpsS HPSH_06800 - 30S ribosomal protein S19 1292 46.83 +1 1325087..1325923 - 278 188528104 rplB HPSH_06805 - 50S ribosomal protein L2 1293 39.36 0 1325939..1326220 - 93 188528105 rplW HPSH_06810 - 50S ribosomal protein L23 1294 43.36 +1 1326224..1326871 - 215 188528106 rplD HPSH_06815 - 50S ribosomal protein L4 1295 45.83 +1 1326906..1327481 - 191 188528107 rplC HPSH_06820 - 50S ribosomal protein L3 1296 44.13 +1 1327518..1327832 - 104 188528108 rpsJ HPSH_06825 - 30S ribosomal protein S10 1297 37.57 0 1327987..1329120 + 377 188528109 - HPSH_06830 - conserved hypothetical ATP-binding protein 1298 38.83 0 1329340..1329921 + 193 188528110 - HPSH_06835 - hypothetical protein 1299 42.93 +1 1329895..1330509 - 204 188528111 - HPSH_06840 - ribonuclease HII 1300 37.23 0 1330540..1330770 - 76 188528112 - HPSH_06845 - hypothetical protein 1301 43.61 +1 1330793..1332184 - 463 188528113 fumC HPSH_06850 - fumarate hydratase 1302 41.01 0 1332359..1332736 + 125 188528114 - HPSH_06855 - hypothetical protein 1303 34.34 -1 1332792..1333979 + 395 188528115 - HPSH_06860 - hypothetical protein 1304 38.89 0 1333976..1334983 + 335 188528116 - HPSH_06865 - cation efflux system protein (czcA) 1305 41.81 0 1334984..1338097 + 1037 188528117 - HPSH_06870 - cation efflux system protein (czcA) 1306 36.21 0 1338094..1338441 - 115 188528118 - HPSH_06875 - hypothetical protein 1307 39.74 0 1338435..1339121 - 228 188528119 - HPSH_06880 - branched-chain amino acid transport protein 1308 41.35 0 1339132..1340241 - 369 188528120 - HPSH_06885 - co-chaperone and heat shock protein 1309 39.37 0 1340420..1341496 + 358 188528121 - HPSH_06890 - hypothetical protein 1310 29.82 -2 1341698..1341811 + 37 188528122 - HPSH_06895 - hypothetical protein 1311 33.33 -1 1342021..1342386 + 121 188528123 - HPSH_06900 - hypothetical protein 1312 39.84 0 1342447..1343475 - 342 188528124 trmU HPSH_06905 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1313 38.98 0 1343616..1344377 + 253 188528125 - HPSH_06910 - hypothetical protein 1314 40.31 0 1344374..1344889 - 171 188528126 - HPSH_06915 - hypothetical protein 1315 40.72 0 1344882..1345328 - 148 188528127 - HPSH_06920 - nickel responsive regulator 1316 38.81 0 1345665..1346102 + 145 188528128 - HPSH_06925 - biopolymer transport protein (exbB) 1317 37.44 0 1346099..1346488 + 129 188528129 - HPSH_06930 - biopolymer transport protein 1318 41.64 0 1346454..1347308 + 284 188528130 - HPSH_06935 - siderophore-mediated iron transport protein (tonB) 1319 37.17 0 1347973..1348701 - 242 188528131 - HPSH_06950 - hypothetical protein 1320 37.72 0 1348708..1349664 - 318 188528132 - HPSH_06955 - magnesium and cobalt transport protein 1321 41.36 0 1349680..1350888 - 402 188528133 pgk HPSH_06960 - phosphoglycerate kinase 1322 42.40 0 1350904..1351896 - 330 188528134 - HPSH_06965 - glyceraldehyde-3-phosphate dehydrogenase 1323 42.59 0 1351985..1352686 - 233 188528135 - HPSH_06970 - uracil-DNA glycosylase 1324 40.53 0 1352683..1353405 - 240 188528136 - HPSH_06975 - 1-acyl-glycerol-3-phosphate acyltransferase (plsC) 1325 36.43 0 1353392..1354555 - 387 188528137 - HPSH_06980 - hypothetical protein 1326 42.56 0 1354562..1355926 - 454 188528138 - HPSH_06985 - protease 1327 42.31 0 1356037..1356270 - 77 188528139 - HPSH_06990 - adenine specific DNA methyltransferase 1328 30.76 -1 1356335..1357228 - 297 188528140 - HPSH_06995 - hypothetical protein 1329 32.96 -1 1357228..1358307 - 359 188528141 - HPSH_07000 - adenine specific DNA methyltransferase (HINFIM) 1330 41.23 0 1358427..1358654 - 75 188528142 - HPSH_07005 - adenine specific DNA methyltransferase 1331 37.44 0 1358699..1361935 - 1078 188528143 - HPSH_07010 - hypothetical protein 1332 41.24 0 1361959..1362780 - 273 188528144 - HPSH_07015 - nicotinate-nucleotide pyrophosphorylase 1333 39.47 0 1362780..1363790 - 336 188528145 - HPSH_07020 - quinolinate synthetase 1334 40.05 0 1363780..1364583 - 267 188528146 - HPSH_07025 - phosphatidylserine decarboxylase 1335 35.12 0 1364580..1365083 - 167 188528147 - HPSH_07030 - hypothetical protein 1336 38.38 0 1365096..1365590 - 164 188528148 - HPSH_07035 - hypothetical protein 1337 40.90 0 1365583..1366467 - 294 188528149 ubiA HPSH_07040 - prenyltransferase 1338 37.21 0 1366496..1367809 - 437 188528150 - HPSH_07045 - competence locus E 1339 40.63 0 1367806..1369272 - 488 188528151 - HPSH_07050 - replicative DNA helicase 1340 41.36 0 1369283..1370677 - 464 188528152 - HPSH_07055 - hypothetical protein 1341 38.01 0 1370680..1371813 - 377 188528153 - HPSH_07060 - signal-transducing protein, histidine kinase 1342 38.16 0 1371848..1372489 - 213 188528154 - HPSH_07065 - putative transcriptional regulator 1343 29.93 -2 1372577..1373635 - 352 188528155 - HPSH_07070 - type IIS restriction enzyme R protein (MBOIIR) 1344 30.13 -2 1373810..1374652 + 280 188528156 - HPSH_07075 - type II restriction endonuclease 1345 33.45 -1 1374652..1375545 + 297 188528157 - HPSH_07080 - adenine-specific DNA metylase 1346 33.82 -1 1375517..1376959 + 480 188528158 - HPSH_07085 - Adenine-specific DNA methylase 1347 36.68 0 1376917..1377993 + 358 188528159 - HPSH_07090 - adenine-specific DNA methylase 1348 35.19 0 1378003..1380915 + 970 188528160 - HPSH_07095 - type III restriction enzyme R protein 1349 37.22 0 1380965..1381711 - 248 188528161 - HPSH_07100 - rod shape-determining protein 1350 46.07 +1 1381715..1382758 - 347 188528162 - HPSH_07105 - rod shape-determining protein 1351 40.98 0 1382801..1384147 - 448 188528163 clpX HPSH_07110 - ATP-dependent protease ATP-binding subunit 1352 42.44 0 1384149..1384961 - 270 188528164 - HPSH_07115 - UDP-N-acetylglucosamine acyltransferase 1353 41.46 0 1384964..1385443 - 159 188528165 fabZ HPSH_07120 - (3R)-hydroxymyristoyl-ACP dehydratase 1354 37.95 0 1385626..1386015 - 129 188528166 - HPSH_07125 - flagellar assembly protein FliW 1355 33.33 -1 1386232..1386378 + 48 188528167 - HPSH_07130 - hypothetical protein 1356 37.10 0 1386421..1387083 + 220 188528168 - HPSH_07135 - competence lipoprotein 1357 41.19 0 1387124..1389592 + 822 188528169 - HPSH_07140 - ATP-dependent protease 1358 42.03 0 1389601..1390428 + 275 188528170 - HPSH_07145 - prephenate dehydrogenase 1359 36.40 0 1390714..1391562 - 282 188528171 - HPSH_07150 - putative endonuclease 1360 32.52 -1 1391687..1393405 - 572 188528172 - HPSH_07155 - putative type III restriction enzyme M protein 1361 43.46 +1 1396155..1397003 + 282 188528173 - HPSH_07170 - biotin synthase 1362 36.97 0 1397003..1397881 + 292 188528174 - HPSH_07175 - putative ribonuclease N 1363 27.34 -2 1402463..1402729 - 88 188528175 - HPSH_07180 - hypothetical protein 1364 31.47 -1 1403060..1404400 - 446 188528176 - HPSH_07185 - hypothetical protein 1365 37.47 0 1404416..1404778 - 120 188528177 - HPSH_07190 - hypothetical protein 1366 33.91 -1 1404799..1405491 - 230 188528178 - HPSH_07195 - hypothetical protein 1367 39.91 0 1405754..1406194 - 146 188528179 - HPSH_07200 - 7-cyano-7-deazaguanine reductase 1368 38.01 0 1406253..1406594 + 113 188528180 - HPSH_07205 - hypothetical protein 1369 38.51 0 1406665..1407495 + 276 188528181 miaA HPSH_07210 - tRNA delta(2)-isopentenylpyrophosphate transferase 1370 38.68 0 1407500..1408603 + 367 188528182 - HPSH_07215 - lipopolysaccharide 1,2-glucosyltransferase 1371 40.64 0 1410160..1410939 - 259 188528183 murB HPSH_07235 - UDP-N-acetylenolpyruvoylglucosamine reductase 1372 38.49 0 1410943..1411194 - 83 188528184 fliQ HPSH_07240 - flagellar biosynthesis protein FliQ 1373 45.29 +1 1411220..1412524 - 434 188528185 fliI HPSH_07245 - flagellum-specific ATP synthase 1374 42.40 0 1412525..1413439 - 304 188528186 - HPSH_07250 - type IV secretion system ATPase 1375 40.79 0 1413456..1416218 - 920 188528187 ileS HPSH_07255 - isoleucyl-tRNA synthetase 1376 42.64 0 1416253..1416510 - 85 188528188 - HPSH_07260 - hypothetical protein 1377 42.67 0 1416612..1417232 + 206 188528189 - HPSH_07265 - hypothetical protein 1378 47.06 +2 1417498..1417752 - 84 188528190 - HPSH_07270 - hypothetical protein 1379 38.18 0 1417939..1419012 - 357 188528191 - HPSH_07275 - hypothetical protein 1380 43.43 +1 1419009..1419998 - 329 188528192 - HPSH_07280 - polysialic acid capsule expression protein (kpsF) 1381 42.88 +1 1419982..1422075 - 697 188528193 - HPSH_07285 - conserved hypothetical ATP-binding protein 1382 38.36 0 1422109..1422924 - 271 188528194 ksgA HPSH_07290 - dimethyladenosine transferase 1383 23.66 -2 1423717..1423809 + 30 188528195 - HPSH_07295 - hypothetical protein 1384 32.43 -1 1423889..1424998 - 369 188528196 - HPSH_07300 - type I R-M system specificity subunit 1385 39.00 0 1425011..1425892 - 293 188528197 - HPSH_07305 - formyltetrahydrofolate hydrolase (purU) 1386 41.30 0 1425895..1426773 - 292 188528198 - HPSH_07310 - protease IV (PspA) 38.76 MEAN 4.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0