version 1.0
Helicobacter pylori Shi470, complete genome - 1..1608548 1569 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1209 40.91 0 1257841..1258737 + 298 188528021 - HPSH_06380 - hypothetical protein 1210 38.38 0 1258741..1259988 + 415 188528022 - HPSH_06385 - hypothetical protein 1211 21.43 -2 1259985..1260068 - 27 188528023 - HPSH_06390 - hypothetical protein 1212 35.51 0 1260067..1260618 + 183 188528024 - HPSH_06395 - hypothetical protein 1213 42.82 0 1260618..1261745 + 375 188528025 - HPSH_06400 - carbamoyl phosphate synthase small subunit 1214 44.78 +1 1261913..1262917 + 334 188528026 amiF HPSH_06405 - formamidase 1215 37.25 0 1263105..1263206 - 33 188528027 - HPSH_06410 - hypothetical protein 1216 42.06 0 1263325..1263897 - 190 188528028 - HPSH_06415 - Maf-like protein 1217 42.73 0 1263899..1266442 - 847 188528029 alaS HPSH_06420 - alanyl-tRNA synthetase 1218 33.77 -1 1266561..1266791 + 76 188528030 - HPSH_06425 - hypothetical protein 1219 31.03 -1 1267051..1267137 - 28 188528031 - HPSH_06430 - hypothetical protein 1220 31.61 -1 1267137..1267310 - 57 188528032 - HPSH_06435 - hypothetical protein 1221 44.35 +1 1267314..1269428 - 704 188528033 - HPSH_06440 - outer membrane protein (omp19) 1222 41.09 0 1269923..1270180 - 85 188528034 rpsR HPSH_06445 - 30S ribosomal protein S18 1223 43.59 +1 1270203..1270748 - 181 188528035 - HPSH_06450 - single-strand DNA-binding protein 1224 37.76 0 1270758..1271186 - 142 188528036 rpsF HPSH_06455 - 30S ribosomal protein S6 1225 35.68 0 1271329..1272351 - 340 188528037 - HPSH_06460 - DNA polymerase III subunit delta 1226 37.98 0 1272341..1274275 - 644 188528038 - HPSH_06465 - 3'-5' exoribonuclease R 1227 39.02 0 1274275..1275066 - 263 188528039 aroE HPSH_06470 - shikimate 5-dehydrogenase 1228 39.72 0 1275074..1275652 - 192 188528040 - HPSH_06475 - hypothetical protein 1229 39.67 0 1276716..1278497 - 593 188528041 - HPSH_06490 - hypothetical protein 1230 39.96 0 1278498..1279478 - 326 188528042 - HPSH_06495 - tryptophanyl-tRNA synthetase 1231 35.41 0 1279550..1280272 - 240 188528043 - HPSH_06500 - biotin synthesis protein (bioC) 1232 42.67 0 1280392..1280991 + 199 188528044 secG HPSH_06505 - preprotein translocase subunit SecG 1233 39.25 0 1280991..1281548 + 185 188528045 frr HPSH_06510 - ribosome recycling factor 1234 43.40 +1 1281552..1282157 + 201 188528046 pyrE HPSH_06515 - orotate phosphoribosyltransferase 1235 38.92 0 1282147..1282611 + 154 188528047 - HPSH_06520 - conserved hypothetical mitochondrial protein-like protein 4 1236 43.91 +1 1282608..1283297 + 229 188528048 - HPSH_06525 - hypothetical protein 1237 39.05 0 1283399..1283800 + 133 188528049 - HPSH_06530 - NADH dehydrogenase subunit A 1238 46.67 +1 1283800..1284279 + 159 188528050 - HPSH_06535 - NADH dehydrogenase subunit B 1239 40.35 0 1284279..1285076 + 265 188528051 - HPSH_06540 - NADH dehydrogenase subunit C 1240 43.90 +1 1285078..1286307 + 409 188528052 - HPSH_06545 - NADH dehydrogenase subunit D 1241 38.53 0 1286304..1286534 + 76 188528053 - HPSH_06550 - NADH-ubiquinone oxidoreductase chain E 1242 36.96 0 1286531..1287523 + 330 188528054 - HPSH_06555 - NADH-ubiquinone oxidoreductase chain F 1243 41.70 0 1287520..1290054 + 844 188528055 - HPSH_06560 - NADH dehydrogenase subunit G 1244 42.22 0 1290051..1291040 + 329 188528056 - HPSH_06565 - NADH dehydrogenase subunit H 1245 45.70 +1 1291051..1291713 + 220 188528057 - HPSH_06570 - NADH dehydrogenase subunit I 1246 42.26 0 1291706..1292254 + 182 188528058 - HPSH_06575 - NADH dehydrogenase subunit J 1247 38.28 0 1292251..1292553 + 100 188528059 - HPSH_06580 - NADH dehydrogenase subunit K 1248 43.39 +1 1292556..1294394 + 612 188528060 - HPSH_06585 - NADH dehydrogenase subunit L 1249 41.59 0 1294398..1295936 + 512 188528061 - HPSH_06590 - NADH dehydrogenase subunit M 1250 43.27 +1 1295923..1297401 + 492 188528062 - HPSH_06595 - NADH dehydrogenase subunit N 1251 38.68 0 1297391..1299802 + 803 188528063 - HPSH_06600 - paralysed flagella protein 1252 41.47 0 1299804..1301180 + 458 188528064 - HPSH_06605 - phosphomannomutase 1253 38.51 0 1301291..1301599 + 102 188528065 - HPSH_06610 - hypothetical protein 1254 40.56 0 1301830..1302618 - 262 188528066 trpA HPSH_06615 - tryptophan synthase subunit alpha 1255 43.40 +1 1302615..1303796 - 393 188528067 - HPSH_06620 - tryptophan synthase subunit beta 1256 37.01 0 1303798..1305156 - 452 188528068 - HPSH_06625 - bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1257 41.07 0 1305149..1306156 - 335 188528069 trpD HPSH_06630 - anthranilate phosphoribosyltransferase 1258 38.12 0 1306153..1306737 - 194 188528070 - HPSH_06635 - anthranilate synthase component II 1259 39.50 0 1306734..1308371 - 545 188528071 - HPSH_06640 - anthranilate synthase component I 1260 39.94 0 1308325..1309383 - 352 188528072 - HPSH_06645 - hypothetical protein 1261 38.53 0 1309451..1310143 - 230 188528073 - HPSH_06650 - conserved hypothetical secreted protein 1262 38.43 0 1310313..1310861 + 182 188528074 - HPSH_06655 - conserved hypothetical secreted protein 1263 31.88 -1 1310836..1310973 - 45 188528075 - HPSH_06660 - hypothetical protein 1264 36.53 0 1311446..1312102 + 218 188528076 - HPSH_06665 - putative transcriptional regulator 1265 36.95 0 1312224..1312886 + 220 188528077 - HPSH_06670 - nicotinamide mononucleotide transporter 1266 38.21 0 1312874..1313488 + 204 188528078 - HPSH_06675 - hypothetical protein 1267 33.33 -1 1313800..1313952 + 50 188528079 - HPSH_06680 - hypothetical protein 1268 44.44 +1 1313996..1314346 - 116 188528080 rplQ HPSH_06685 - 50S ribosomal protein L17 1269 40.77 0 1314346..1315380 - 344 188528081 - HPSH_06690 - DNA-directed RNA polymerase subunit alpha 1270 43.86 +1 1315392..1316018 - 208 188528082 rpsD HPSH_06695 - 30S ribosomal protein S4 1271 45.71 +1 1316028..1316423 - 131 188528083 - HPSH_06700 - 30S ribosomal protein S11 1272 41.05 0 1316446..1316808 - 120 188528084 rpsM HPSH_06705 - 30S ribosomal protein S13 1273 39.47 0 1316812..1316925 - 37 188528085 - HPSH_06710 - hypothetical protein 1274 41.55 0 1317004..1317222 - 72 188528086 infA HPSH_06715 - translation initiation factor IF-1 1275 44.36 +1 1317222..1317983 - 253 188528087 - HPSH_06720 - methionine aminopeptidase 1276 42.20 0 1317983..1319245 - 420 188528088 secY HPSH_06725 - preprotein translocase subunit SecY 1277 41.54 0 1319283..1319684 - 133 188528089 rplO HPSH_06730 - 50S ribosomal protein L15 1278 44.16 +1 1319702..1320163 - 153 188528090 rpsE HPSH_06735 - 30S ribosomal protein S5 1279 43.14 +1 1320160..1320516 - 118 188528091 rplR HPSH_06740 - 50S ribosomal protein L18 1280 44.51 +1 1320530..1321066 - 178 188528092 rplF HPSH_06745 - 50S ribosomal protein L6 1281 38.13 0 1321077..1321472 - 131 188528093 rpsH HPSH_06750 - 30S ribosomal protein S8 1282 42.47 0 1321482..1321667 - 61 188528094 rpsN HPSH_06755 - 30S ribosomal protein S14 1283 40.11 0 1321677..1322222 - 181 188528095 rplE HPSH_06760 - 50S ribosomal protein L5 1284 40.09 0 1322235..1322456 - 73 188528096 rplX HPSH_06765 - 50S ribosomal protein L24 1285 44.17 +1 1322456..1322824 - 122 188528097 rplN HPSH_06770 - 50S ribosomal protein L14 1286 38.70 0 1322827..1323087 - 86 188528098 rpsQ HPSH_06775 - 30S ribosomal protein S17 1287 34.83 0 1323101..1323301 - 66 188528099 - HPSH_06780 - 50S ribosomal protein L29 1288 42.96 +1 1323288..1323713 - 141 188528100 rplP HPSH_06785 - 50S ribosomal protein L16 1289 44.40 +1 1323716..1324420 - 234 188528101 rpsC HPSH_06790 - 30S ribosomal protein S3 1290 43.63 +1 1324424..1324792 - 122 188528102 rplV HPSH_06795 - 50S ribosomal protein L22 1291 39.36 0 1324802..1325083 - 93 188528103 rpsS HPSH_06800 - 30S ribosomal protein S19 1292 46.83 +1 1325087..1325923 - 278 188528104 rplB HPSH_06805 - 50S ribosomal protein L2 1293 39.36 0 1325939..1326220 - 93 188528105 rplW HPSH_06810 - 50S ribosomal protein L23 1294 43.36 +1 1326224..1326871 - 215 188528106 rplD HPSH_06815 - 50S ribosomal protein L4 1295 45.83 +1 1326906..1327481 - 191 188528107 rplC HPSH_06820 - 50S ribosomal protein L3 1296 44.13 +1 1327518..1327832 - 104 188528108 rpsJ HPSH_06825 - 30S ribosomal protein S10 1297 37.57 0 1327987..1329120 + 377 188528109 - HPSH_06830 - conserved hypothetical ATP-binding protein 1298 38.83 0 1329340..1329921 + 193 188528110 - HPSH_06835 - hypothetical protein 1299 42.93 +1 1329895..1330509 - 204 188528111 - HPSH_06840 - ribonuclease HII 1300 37.23 0 1330540..1330770 - 76 188528112 - HPSH_06845 - hypothetical protein 1301 43.61 +1 1330793..1332184 - 463 188528113 fumC HPSH_06850 - fumarate hydratase 1302 41.01 0 1332359..1332736 + 125 188528114 - HPSH_06855 - hypothetical protein 1303 34.34 -1 1332792..1333979 + 395 188528115 - HPSH_06860 - hypothetical protein 1304 38.89 0 1333976..1334983 + 335 188528116 - HPSH_06865 - cation efflux system protein (czcA) 1305 41.81 0 1334984..1338097 + 1037 188528117 - HPSH_06870 - cation efflux system protein (czcA) 1306 36.21 0 1338094..1338441 - 115 188528118 - HPSH_06875 - hypothetical protein 1307 39.74 0 1338435..1339121 - 228 188528119 - HPSH_06880 - branched-chain amino acid transport protein 1308 41.35 0 1339132..1340241 - 369 188528120 - HPSH_06885 - co-chaperone and heat shock protein 38.76 MEAN 4.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0