version 1.0
Helicobacter pylori Shi470, complete genome - 1..1608548 1569 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1163 36.31 0 1208712..1210526 + 604 188527975 - HPSH_06150 - hypothetical protein 1164 41.88 0 1210706..1211746 - 346 188527976 - HPSH_06155 - aspartate-semialdehyde dehydrogenase 1165 38.98 0 1211733..1213061 - 442 188527977 hisS HPSH_06160 - histidyl-tRNA synthetase 1166 40.29 0 1213123..1214172 + 349 188527978 - HPSH_06165 - ADP-heptose-lps heptosyltransferase II 1167 36.70 0 1214365..1214691 - 108 188527979 - HPSH_06170 - hypothetical protein 1168 33.33 -1 1214875..1214985 + 36 188527980 - HPSH_06175 - hypothetical protein 1169 44.88 +1 1215233..1217311 - 692 188527981 - HPSH_06180 - elongation factor G 1170 43.16 +1 1217323..1217790 - 155 188527982 - HPSH_06185 - 30S ribosomal protein S7 1171 41.67 0 1217806..1218213 - 135 188527983 rpsL HPSH_06190 - 30S ribosomal protein S12 1172 43.54 +1 1218301..1226973 - 2890 188527984 - HPSH_06195 - DNA-directed RNA polymerase subunit beta/beta' 1173 32.81 -1 1226967..1227158 + 63 188527985 - HPSH_06200 - hypothetical protein 1174 43.12 +1 1227197..1227574 - 125 188527986 rplL HPSH_06205 - 50S ribosomal protein L7/L12 1175 40.81 0 1227620..1228114 - 164 188527987 rplJ HPSH_06210 - 50S ribosomal protein L10 1176 43.83 +1 1228223..1228927 - 234 188527988 rplA HPSH_06215 - 50S ribosomal protein L1 1177 42.72 0 1228972..1229397 - 141 188527989 rplK HPSH_06220 - 50S ribosomal protein L11 1178 39.77 0 1229415..1229942 - 175 188527990 nusG HPSH_06225 - transcription antitermination protein NusG 1179 38.33 0 1229972..1230151 - 59 188527991 secE HPSH_06230 - preprotein translocase subunit SecE 1180 35.22 0 1230405..1230563 - 52 188527992 rpmG HPSH_06235 - 50S ribosomal protein L33 1181 44.33 +1 1230597..1231796 - 399 188527993 - HPSH_06240 - elongation factor Tu 1182 38.00 0 1232519..1234255 + 578 188527994 - HPSH_06245 - ABC-transporter, ATP-binding domain 1183 37.52 0 1234264..1234932 - 222 188527995 - HPSH_06250 - hypothetical protein 1184 37.68 0 1235036..1236025 - 329 188527996 - HPSH_06255 - ulcer associated adenine specific DNA methyltransferase 1185 36.11 0 1236380..1236523 - 47 188527997 - HPSH_06260 - hypothetical protein 1186 50.39 +2 1236745..1237260 - 171 188527998 - HPSH_06265 - serine acetyltransferase 1187 36.67 0 1237301..1237420 - 39 188527999 - HPSH_06270 - hypothetical protein 1188 45.91 +1 1237914..1238231 - 105 188528000 - HPSH_06275 - F0F1 ATP synthase subunit C 1189 40.98 0 1238368..1240434 - 688 188528001 - HPSH_06280 - polynucleotide phosphorylase/polyadenylase 1190 38.16 0 1240437..1241141 - 234 188528002 - HPSH_06285 - hypothetical protein 1191 37.05 0 1241156..1243417 - 753 188528003 - HPSH_06290 - organic solvent tolerance protein 1192 37.50 0 1243420..1243899 - 159 188528004 - HPSH_06295 - hypothetical protein 1193 39.29 0 1243941..1245215 - 424 188528005 - HPSH_06300 - glycinamide ribonucleotide synthetase 1194 32.81 -1 1245335..1245526 + 63 188528006 - HPSH_06305 - hypothetical protein 1195 37.70 0 1245528..1246214 - 228 188528007 - HPSH_06310 - ABC transporter, ATP-binding protein 1196 38.44 0 1246208..1246912 - 234 188528008 - HPSH_06315 - putative undecaprenyl pyrophosphate synthase 1197 39.56 0 1246952..1249792 - 946 188528009 - HPSH_06320 - D-lactate dehydrogenase 1198 40.54 0 1249864..1250196 + 110 188528010 - HPSH_06325 - hypothetical protein 1199 38.18 0 1250199..1250879 + 226 188528011 hemD HPSH_06330 - uroporphyrinogen-III synthase 1200 37.40 0 1250926..1251318 + 130 188528012 - HPSH_06335 - hypothetical protein 1201 38.92 0 1251364..1252401 - 345 188528013 - HPSH_06340 - coproporphyrinogen III oxidase 1202 39.18 0 1252497..1252787 + 96 188528014 - HPSH_06345 - hypothetical protein 1203 40.93 0 1252946..1253419 + 157 188528015 - HPSH_06350 - dinucleoside polyphosphate hydrolase 1204 44.99 +1 1253413..1254630 + 405 188528016 - HPSH_06355 - aspartate kinase 1205 40.15 0 1254627..1255169 + 180 188528017 - HPSH_06360 - hypothetical protein 1206 35.62 0 1255166..1255822 + 218 188528018 - HPSH_06365 - DNA polymerase III subunit delta' 1207 38.93 0 1255819..1256961 + 380 188528019 - HPSH_06370 - dihydropteroate synthase (folP) 1208 41.99 0 1256986..1257447 - 153 188528020 - HPSH_06375 - hypothetical protein 1209 40.91 0 1257841..1258737 + 298 188528021 - HPSH_06380 - hypothetical protein 1210 38.38 0 1258741..1259988 + 415 188528022 - HPSH_06385 - hypothetical protein 1211 21.43 -2 1259985..1260068 - 27 188528023 - HPSH_06390 - hypothetical protein 1212 35.51 0 1260067..1260618 + 183 188528024 - HPSH_06395 - hypothetical protein 1213 42.82 0 1260618..1261745 + 375 188528025 - HPSH_06400 - carbamoyl phosphate synthase small subunit 1214 44.78 +1 1261913..1262917 + 334 188528026 amiF HPSH_06405 - formamidase 1215 37.25 0 1263105..1263206 - 33 188528027 - HPSH_06410 - hypothetical protein 1216 42.06 0 1263325..1263897 - 190 188528028 - HPSH_06415 - Maf-like protein 1217 42.73 0 1263899..1266442 - 847 188528029 alaS HPSH_06420 - alanyl-tRNA synthetase 1218 33.77 -1 1266561..1266791 + 76 188528030 - HPSH_06425 - hypothetical protein 1219 31.03 -1 1267051..1267137 - 28 188528031 - HPSH_06430 - hypothetical protein 1220 31.61 -1 1267137..1267310 - 57 188528032 - HPSH_06435 - hypothetical protein 1221 44.35 +1 1267314..1269428 - 704 188528033 - HPSH_06440 - outer membrane protein (omp19) 1222 41.09 0 1269923..1270180 - 85 188528034 rpsR HPSH_06445 - 30S ribosomal protein S18 1223 43.59 +1 1270203..1270748 - 181 188528035 - HPSH_06450 - single-strand DNA-binding protein 1224 37.76 0 1270758..1271186 - 142 188528036 rpsF HPSH_06455 - 30S ribosomal protein S6 1225 35.68 0 1271329..1272351 - 340 188528037 - HPSH_06460 - DNA polymerase III subunit delta 1226 37.98 0 1272341..1274275 - 644 188528038 - HPSH_06465 - 3'-5' exoribonuclease R 1227 39.02 0 1274275..1275066 - 263 188528039 aroE HPSH_06470 - shikimate 5-dehydrogenase 1228 39.72 0 1275074..1275652 - 192 188528040 - HPSH_06475 - hypothetical protein 1229 39.67 0 1276716..1278497 - 593 188528041 - HPSH_06490 - hypothetical protein 1230 39.96 0 1278498..1279478 - 326 188528042 - HPSH_06495 - tryptophanyl-tRNA synthetase 1231 35.41 0 1279550..1280272 - 240 188528043 - HPSH_06500 - biotin synthesis protein (bioC) 1232 42.67 0 1280392..1280991 + 199 188528044 secG HPSH_06505 - preprotein translocase subunit SecG 1233 39.25 0 1280991..1281548 + 185 188528045 frr HPSH_06510 - ribosome recycling factor 1234 43.40 +1 1281552..1282157 + 201 188528046 pyrE HPSH_06515 - orotate phosphoribosyltransferase 1235 38.92 0 1282147..1282611 + 154 188528047 - HPSH_06520 - conserved hypothetical mitochondrial protein-like protein 4 1236 43.91 +1 1282608..1283297 + 229 188528048 - HPSH_06525 - hypothetical protein 1237 39.05 0 1283399..1283800 + 133 188528049 - HPSH_06530 - NADH dehydrogenase subunit A 1238 46.67 +1 1283800..1284279 + 159 188528050 - HPSH_06535 - NADH dehydrogenase subunit B 1239 40.35 0 1284279..1285076 + 265 188528051 - HPSH_06540 - NADH dehydrogenase subunit C 1240 43.90 +1 1285078..1286307 + 409 188528052 - HPSH_06545 - NADH dehydrogenase subunit D 1241 38.53 0 1286304..1286534 + 76 188528053 - HPSH_06550 - NADH-ubiquinone oxidoreductase chain E 1242 36.96 0 1286531..1287523 + 330 188528054 - HPSH_06555 - NADH-ubiquinone oxidoreductase chain F 1243 41.70 0 1287520..1290054 + 844 188528055 - HPSH_06560 - NADH dehydrogenase subunit G 1244 42.22 0 1290051..1291040 + 329 188528056 - HPSH_06565 - NADH dehydrogenase subunit H 1245 45.70 +1 1291051..1291713 + 220 188528057 - HPSH_06570 - NADH dehydrogenase subunit I 1246 42.26 0 1291706..1292254 + 182 188528058 - HPSH_06575 - NADH dehydrogenase subunit J 1247 38.28 0 1292251..1292553 + 100 188528059 - HPSH_06580 - NADH dehydrogenase subunit K 1248 43.39 +1 1292556..1294394 + 612 188528060 - HPSH_06585 - NADH dehydrogenase subunit L 1249 41.59 0 1294398..1295936 + 512 188528061 - HPSH_06590 - NADH dehydrogenase subunit M 1250 43.27 +1 1295923..1297401 + 492 188528062 - HPSH_06595 - NADH dehydrogenase subunit N 1251 38.68 0 1297391..1299802 + 803 188528063 - HPSH_06600 - paralysed flagella protein 1252 41.47 0 1299804..1301180 + 458 188528064 - HPSH_06605 - phosphomannomutase 1253 38.51 0 1301291..1301599 + 102 188528065 - HPSH_06610 - hypothetical protein 1254 40.56 0 1301830..1302618 - 262 188528066 trpA HPSH_06615 - tryptophan synthase subunit alpha 1255 43.40 +1 1302615..1303796 - 393 188528067 - HPSH_06620 - tryptophan synthase subunit beta 1256 37.01 0 1303798..1305156 - 452 188528068 - HPSH_06625 - bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1257 41.07 0 1305149..1306156 - 335 188528069 trpD HPSH_06630 - anthranilate phosphoribosyltransferase 1258 38.12 0 1306153..1306737 - 194 188528070 - HPSH_06635 - anthranilate synthase component II 1259 39.50 0 1306734..1308371 - 545 188528071 - HPSH_06640 - anthranilate synthase component I 1260 39.94 0 1308325..1309383 - 352 188528072 - HPSH_06645 - hypothetical protein 1261 38.53 0 1309451..1310143 - 230 188528073 - HPSH_06650 - conserved hypothetical secreted protein 1262 38.43 0 1310313..1310861 + 182 188528074 - HPSH_06655 - conserved hypothetical secreted protein 38.76 MEAN 4.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0