version 1.0
Helicobacter pylori Shi470, complete genome - 1..1608548 1569 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1102 44.09 +1 1146259..1146630 - 123 188527914 atpC HPSH_05825 - F0F1 ATP synthase subunit epsilon 1103 44.75 +1 1146641..1148050 - 469 188527915 - HPSH_05830 - F0F1 ATP synthase subunit beta 1104 36.98 0 1148070..1148975 - 301 188527916 - HPSH_05835 - F0F1 ATP synthase subunit gamma 1105 44.38 +1 1148990..1150501 - 503 188527917 - HPSH_05840 - F0F1 ATP synthase subunit alpha 1106 34.99 0 1150524..1151066 - 180 188527918 - HPSH_05845 - F0F1 ATP synthase subunit delta 1107 33.53 -1 1151067..1151582 - 171 188527919 - HPSH_05850 - F0F1 ATP synthase subunit B 1108 42.53 0 1151586..1152020 - 144 188527920 - HPSH_05855 - F0F1 ATP synthase subunit B' 1109 38.72 0 1152131..1153003 - 290 188527921 - HPSH_05860 - plasmid replication-partition related protein 1110 39.97 0 1153006..1153803 - 265 188527922 - HPSH_05865 - SpoOJ regulator (soj) 1111 38.65 0 1153806..1154444 - 212 188527923 - HPSH_05870 - biotin--protein ligase 1112 40.80 0 1154441..1155337 - 298 188527924 fmt HPSH_05875 - methionyl-tRNA formyltransferase 1113 39.88 0 1157863..1159161 - 432 188527925 - HPSH_05890 - hypothetical protein 1114 35.19 0 1159424..1159531 + 35 188527926 - HPSH_05895 - hypothetical protein 1115 25.00 -2 1159918..1160013 - 31 188527927 - HPSH_05900 - hypothetical protein 1116 46.24 +1 1162228..1162320 + 30 188527928 - HPSH_05905 - hypothetical protein 1117 42.32 0 1162317..1163117 - 266 188527929 - HPSH_05910 - hypothetical protein 1118 35.56 0 1163177..1163266 + 29 188527930 - HPSH_05915 - hypothetical protein 1119 45.38 +1 1163421..1163777 - 118 188527931 rplS HPSH_05920 - 50S ribosomal protein L19 1120 40.00 0 1163799..1164488 - 229 188527932 trmD HPSH_05925 - tRNA (guanine-N(1)-)-methyltransferase 1121 36.22 0 1164489..1165043 - 184 188527933 - HPSH_05930 - 16S rRNA processing protein 1122 39.66 0 1165044..1165391 - 115 188527934 - HPSH_05935 - hypothetical protein 1123 42.42 0 1165408..1165638 - 76 188527935 rpsP HPSH_05940 - 30S ribosomal protein S16 1124 41.13 0 1165712..1167058 - 448 188527936 - HPSH_05945 - signal recognition particle protein 1125 39.82 0 1167073..1169691 - 872 188527937 valS HPSH_05950 - valyl-tRNA synthetase 1126 37.01 0 1169829..1170236 + 135 188527938 - HPSH_05955 - flagellar assembly protein FliW 1127 41.43 0 1170248..1171309 + 353 188527939 murG HPSH_05960 - N-acetylglucosaminyl transferase 1128 42.61 0 1171417..1173507 + 696 188527940 - HPSH_05965 - outer membrane protein HopI 1129 41.63 0 1173530..1177219 + 1229 188527941 - HPSH_05970 - outer membrane protein HopL 1130 42.72 0 1177233..1177988 + 251 188527942 - HPSH_05975 - pyrroline-5-carboxylate reductase 1131 36.52 0 1178032..1178565 + 177 188527943 - HPSH_05980 - cell filamentation protein 1132 41.61 0 1178623..1179045 - 140 188527944 - HPSH_05985 - putative metalloprotease 1133 43.03 +1 1179098..1179592 - 164 188527945 - HPSH_05990 - flavodoxin FldA 1134 39.35 0 1179681..1180262 - 193 188527946 - HPSH_05995 - hypothetical protein 1135 37.50 0 1180384..1180575 + 63 188527947 - HPSH_06000 - cation transport subunit for cbb3-type oxidase 1136 41.46 0 1180601..1181572 + 323 188527948 - HPSH_06005 - thioredoxin reductase 1137 40.35 0 1182809..1184446 + 545 188527949 - HPSH_06020 - glucose-6-phosphate isomerase (pgi) 1138 33.33 -1 1184434..1184520 - 28 188527950 - HPSH_06025 - hypothetical protein 1139 43.71 +1 1184755..1186170 + 471 188527951 - HPSH_06030 - outer membrane protein HofH 1140 29.17 -2 1186222..1186341 - 39 188527952 - HPSH_06035 - hypothetical protein 1141 44.36 +1 1186421..1188496 - 691 188527953 - HPSH_06040 - carbon starvation protein 1142 38.69 0 1188707..1189360 + 217 188527954 - HPSH_06045 - glutamine ABC transporter, permease protein 1143 40.33 0 1189363..1190034 + 223 188527955 - HPSH_06050 - glutamine ABC transporter, permease protein (glnP) 1144 38.82 0 1190036..1190782 + 248 188527956 - HPSH_06055 - glutamine ABC transporter, ATP-binding protein (glnQ) 1145 36.93 0 1190831..1191664 + 277 188527957 - HPSH_06060 - glutamine ABC transporter, periplasmic glutamine-binding protein 1146 34.78 0 1191657..1191725 + 22 188527958 - HPSH_06065 - hypothetical protein 1147 39.86 0 1191785..1192336 + 183 188527959 - HPSH_06070 - hypothetical protein 1148 43.63 +1 1192552..1193775 - 407 188527960 - HPSH_06075 - glucose/galactose transporter 1149 44.04 +1 1193905..1195212 - 435 188527961 - HPSH_06080 - hypothetical protein 1150 32.14 -1 1195325..1195408 - 27 188527962 - HPSH_06085 - hypothetical protein 1151 27.54 -2 1195547..1195684 + 45 188527963 - HPSH_06090 - hypothetical protein 1152 42.52 0 1195662..1197587 - 641 188527964 - HPSH_06095 - outer membrane protein (omp27) 1153 33.33 -1 1197737..1197847 + 36 188527965 - HPSH_06100 - hypothetical protein 1154 42.84 0 1197859..1198563 - 234 188527966 - HPSH_06105 - purine-nucleoside phosphorylase 1155 39.29 0 1198560..1199801 - 413 188527967 - HPSH_06110 - phosphopentomutase 1156 44.87 +1 1199813..1201069 - 418 188527968 - HPSH_06115 - pyrimidine nucleoside transport protein (nupC) 1157 40.62 0 1201396..1202727 + 443 188527969 - HPSH_06120 - multidrug-efflux transporter 1158 41.99 0 1202745..1203506 + 253 188527970 - HPSH_06125 - hypothetical protein 1159 37.15 0 1203515..1204666 - 383 188527971 - HPSH_06130 - NA+/H+ antiporter (napA) 1160 39.13 0 1204692..1206071 - 459 188527972 - HPSH_06135 - hypothetical protein 1161 43.56 +1 1206231..1207403 - 390 188527973 - HPSH_06140 - sugar efflux transporter 1162 41.53 0 1207682..1208425 + 247 188527974 - HPSH_06145 - carbonic anhydrase 1163 36.31 0 1208712..1210526 + 604 188527975 - HPSH_06150 - hypothetical protein 1164 41.88 0 1210706..1211746 - 346 188527976 - HPSH_06155 - aspartate-semialdehyde dehydrogenase 1165 38.98 0 1211733..1213061 - 442 188527977 hisS HPSH_06160 - histidyl-tRNA synthetase 1166 40.29 0 1213123..1214172 + 349 188527978 - HPSH_06165 - ADP-heptose-lps heptosyltransferase II 1167 36.70 0 1214365..1214691 - 108 188527979 - HPSH_06170 - hypothetical protein 1168 33.33 -1 1214875..1214985 + 36 188527980 - HPSH_06175 - hypothetical protein 1169 44.88 +1 1215233..1217311 - 692 188527981 - HPSH_06180 - elongation factor G 1170 43.16 +1 1217323..1217790 - 155 188527982 - HPSH_06185 - 30S ribosomal protein S7 1171 41.67 0 1217806..1218213 - 135 188527983 rpsL HPSH_06190 - 30S ribosomal protein S12 1172 43.54 +1 1218301..1226973 - 2890 188527984 - HPSH_06195 - DNA-directed RNA polymerase subunit beta/beta' 1173 32.81 -1 1226967..1227158 + 63 188527985 - HPSH_06200 - hypothetical protein 1174 43.12 +1 1227197..1227574 - 125 188527986 rplL HPSH_06205 - 50S ribosomal protein L7/L12 1175 40.81 0 1227620..1228114 - 164 188527987 rplJ HPSH_06210 - 50S ribosomal protein L10 1176 43.83 +1 1228223..1228927 - 234 188527988 rplA HPSH_06215 - 50S ribosomal protein L1 1177 42.72 0 1228972..1229397 - 141 188527989 rplK HPSH_06220 - 50S ribosomal protein L11 1178 39.77 0 1229415..1229942 - 175 188527990 nusG HPSH_06225 - transcription antitermination protein NusG 1179 38.33 0 1229972..1230151 - 59 188527991 secE HPSH_06230 - preprotein translocase subunit SecE 1180 35.22 0 1230405..1230563 - 52 188527992 rpmG HPSH_06235 - 50S ribosomal protein L33 1181 44.33 +1 1230597..1231796 - 399 188527993 - HPSH_06240 - elongation factor Tu 1182 38.00 0 1232519..1234255 + 578 188527994 - HPSH_06245 - ABC-transporter, ATP-binding domain 1183 37.52 0 1234264..1234932 - 222 188527995 - HPSH_06250 - hypothetical protein 1184 37.68 0 1235036..1236025 - 329 188527996 - HPSH_06255 - ulcer associated adenine specific DNA methyltransferase 1185 36.11 0 1236380..1236523 - 47 188527997 - HPSH_06260 - hypothetical protein 1186 50.39 +2 1236745..1237260 - 171 188527998 - HPSH_06265 - serine acetyltransferase 1187 36.67 0 1237301..1237420 - 39 188527999 - HPSH_06270 - hypothetical protein 1188 45.91 +1 1237914..1238231 - 105 188528000 - HPSH_06275 - F0F1 ATP synthase subunit C 1189 40.98 0 1238368..1240434 - 688 188528001 - HPSH_06280 - polynucleotide phosphorylase/polyadenylase 1190 38.16 0 1240437..1241141 - 234 188528002 - HPSH_06285 - hypothetical protein 1191 37.05 0 1241156..1243417 - 753 188528003 - HPSH_06290 - organic solvent tolerance protein 1192 37.50 0 1243420..1243899 - 159 188528004 - HPSH_06295 - hypothetical protein 1193 39.29 0 1243941..1245215 - 424 188528005 - HPSH_06300 - glycinamide ribonucleotide synthetase 1194 32.81 -1 1245335..1245526 + 63 188528006 - HPSH_06305 - hypothetical protein 1195 37.70 0 1245528..1246214 - 228 188528007 - HPSH_06310 - ABC transporter, ATP-binding protein 1196 38.44 0 1246208..1246912 - 234 188528008 - HPSH_06315 - putative undecaprenyl pyrophosphate synthase 1197 39.56 0 1246952..1249792 - 946 188528009 - HPSH_06320 - D-lactate dehydrogenase 1198 40.54 0 1249864..1250196 + 110 188528010 - HPSH_06325 - hypothetical protein 1199 38.18 0 1250199..1250879 + 226 188528011 hemD HPSH_06330 - uroporphyrinogen-III synthase 1200 37.40 0 1250926..1251318 + 130 188528012 - HPSH_06335 - hypothetical protein 1201 38.92 0 1251364..1252401 - 345 188528013 - HPSH_06340 - coproporphyrinogen III oxidase 38.76 MEAN 4.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0