version 1.0
Helicobacter pylori Shi470, complete genome - 1..1608548 1569 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1058 39.67 0 1104330..1105355 + 341 188527870 nrdF HPSH_05595 - ribonucleotide-diphosphate reductase subunit beta 1059 42.86 0 1105365..1105994 + 209 188527871 pcm HPSH_05600 - protein-L-isoaspartate O-methyltransferase 1060 36.99 0 1106005..1107042 + 345 188527872 - HPSH_05605 - hypothetical protein 1061 41.98 0 1107043..1107771 + 242 188527873 truA HPSH_05610 - tRNA pseudouridine synthase A 1062 40.10 0 1107765..1108799 - 344 188527874 - HPSH_05615 - UDP-glucose 4-epimerase 1063 38.09 0 1109329..1110864 + 511 188527875 - HPSH_05630 - putative outer membrane protein 1064 42.23 0 1110886..1111638 + 250 188527876 - HPSH_05635 - short chain alcohol dehydrogenase 1065 42.38 0 1111825..1112697 - 290 188527877 - HPSH_05640 - hypothetical protein 1066 42.42 0 1112767..1113393 - 208 188527878 - HPSH_05645 - 2-keto-3-deoxy-6-phosphogluconate aldolase 1067 42.86 0 1113412..1115238 - 608 188527879 - HPSH_05650 - phosphogluconate dehydratase 1068 37.48 0 1115304..1116581 + 425 188527880 - HPSH_05655 - glucose-6-phosphate 1-dehydrogenase 1069 39.33 0 1116592..1117275 + 227 188527881 - HPSH_05660 - glucose-6-phosphate 1-dehydrogenase (devB) 1070 46.29 +1 1117262..1118272 + 336 188527882 glk HPSH_05665 - glucokinase 1071 40.84 0 1118434..1119486 + 350 188527883 - HPSH_05670 - NADP-dependent alcohol dehydrogenase 1072 35.49 0 1119498..1120658 - 386 188527884 - HPSH_05675 - putative lipopolysaccharide biosynthesis protein 1073 35.77 0 1120791..1121981 - 396 188527885 - HPSH_05680 - putative lipopolysaccharide biosynthesis protein 1074 39.60 0 1122161..1123468 + 435 188527886 - HPSH_05685 - hypothetical protein 1075 40.18 0 1123475..1124146 - 223 188527887 - HPSH_05690 - outer membrane protein (omp23) 1076 41.18 0 1124436..1124996 + 186 188527888 - HPSH_05695 - pyruvate flavodoxin oxidoreductase subunit gamma 1077 43.00 +1 1125012..1125404 + 130 188527889 porD HPSH_05700 - pyruvate flavodoxin oxidoreductase subunit delta 1078 45.42 +1 1125414..1126637 + 407 188527890 porA HPSH_05705 - pyruvate flavodoxin oxidoreductase subunit alpha 1079 43.39 +1 1126650..1127594 + 314 188527891 - HPSH_05710 - pyruvate ferredoxin oxidoreductase, beta subunit 1080 41.50 0 1127704..1129026 + 440 188527892 - HPSH_05715 - adenylosuccinate lyase 1081 38.85 0 1129095..1129928 + 277 188527893 - HPSH_05720 - outer membrane protein Horl 1082 40.21 0 1129925..1131901 - 658 188527894 - HPSH_05725 - excinuclease ABC subunit B 1083 34.90 0 1132042..1132425 - 127 188527895 - HPSH_05730 - hypothetical protein 1084 40.28 0 1132422..1133630 - 402 188527896 - HPSH_05735 - conserved hypothetical mosaic CUP0956/HP1116/jhp1044-like protein 1085 30.77 -1 1133983..1134060 - 25 188527897 - HPSH_05740 - hypothetical protein 1086 37.87 0 1134057..1134827 - 256 188527898 - HPSH_05745 - cysteine-rich protein X 1087 36.67 0 1134830..1134919 - 29 188527899 - HPSH_05750 - hypothetical protein 1088 43.19 +1 1135096..1136799 - 567 188527900 - HPSH_05755 - gamma-glutamyltranspeptidase 1089 39.48 0 1137004..1138824 - 606 188527901 flgK HPSH_05760 - flagellar hook-associated protein FlgK 1090 36.55 0 1138826..1139260 - 144 188527902 - HPSH_05765 - hypothetical protein 1091 36.24 0 1139390..1140352 - 320 188527903 - HPSH_05770 - type II DNA modification enzyme (methyltransferase) 1092 30.00 -2 1140373..1140462 + 29 188527904 - HPSH_05775 - hypothetical protein 1093 39.71 0 1140483..1140686 - 67 188527905 - HPSH_05780 - flgM protein 1094 30.43 -2 1140750..1140956 - 68 188527906 - HPSH_05785 - hypothetical protein 1095 44.26 +1 1140988..1141536 - 182 188527907 - HPSH_05790 - peptidyl-prolyl cis-trans isomerase 1096 38.15 0 1141523..1142518 - 331 188527908 - HPSH_05795 - hypothetical protein 1097 39.49 0 1142526..1143077 - 183 188527909 - HPSH_05800 - peptidoglycan-associated lipoprotein precursor 1098 37.64 0 1143144..1144397 - 417 188527910 tolB HPSH_05805 - translocation protein TolB 1099 34.32 -1 1144394..1145206 - 270 188527911 - HPSH_05810 - hypothetical protein 1100 35.82 0 1145225..1145626 - 133 188527912 - HPSH_05815 - biopolymer transport protein 1101 38.42 0 1145679..1146248 - 189 188527913 - HPSH_05820 - biopolymer transport protein 1102 44.09 +1 1146259..1146630 - 123 188527914 atpC HPSH_05825 - F0F1 ATP synthase subunit epsilon 1103 44.75 +1 1146641..1148050 - 469 188527915 - HPSH_05830 - F0F1 ATP synthase subunit beta 1104 36.98 0 1148070..1148975 - 301 188527916 - HPSH_05835 - F0F1 ATP synthase subunit gamma 1105 44.38 +1 1148990..1150501 - 503 188527917 - HPSH_05840 - F0F1 ATP synthase subunit alpha 1106 34.99 0 1150524..1151066 - 180 188527918 - HPSH_05845 - F0F1 ATP synthase subunit delta 1107 33.53 -1 1151067..1151582 - 171 188527919 - HPSH_05850 - F0F1 ATP synthase subunit B 1108 42.53 0 1151586..1152020 - 144 188527920 - HPSH_05855 - F0F1 ATP synthase subunit B' 1109 38.72 0 1152131..1153003 - 290 188527921 - HPSH_05860 - plasmid replication-partition related protein 1110 39.97 0 1153006..1153803 - 265 188527922 - HPSH_05865 - SpoOJ regulator (soj) 1111 38.65 0 1153806..1154444 - 212 188527923 - HPSH_05870 - biotin--protein ligase 1112 40.80 0 1154441..1155337 - 298 188527924 fmt HPSH_05875 - methionyl-tRNA formyltransferase 1113 39.88 0 1157863..1159161 - 432 188527925 - HPSH_05890 - hypothetical protein 1114 35.19 0 1159424..1159531 + 35 188527926 - HPSH_05895 - hypothetical protein 1115 25.00 -2 1159918..1160013 - 31 188527927 - HPSH_05900 - hypothetical protein 1116 46.24 +1 1162228..1162320 + 30 188527928 - HPSH_05905 - hypothetical protein 1117 42.32 0 1162317..1163117 - 266 188527929 - HPSH_05910 - hypothetical protein 1118 35.56 0 1163177..1163266 + 29 188527930 - HPSH_05915 - hypothetical protein 1119 45.38 +1 1163421..1163777 - 118 188527931 rplS HPSH_05920 - 50S ribosomal protein L19 1120 40.00 0 1163799..1164488 - 229 188527932 trmD HPSH_05925 - tRNA (guanine-N(1)-)-methyltransferase 1121 36.22 0 1164489..1165043 - 184 188527933 - HPSH_05930 - 16S rRNA processing protein 1122 39.66 0 1165044..1165391 - 115 188527934 - HPSH_05935 - hypothetical protein 1123 42.42 0 1165408..1165638 - 76 188527935 rpsP HPSH_05940 - 30S ribosomal protein S16 1124 41.13 0 1165712..1167058 - 448 188527936 - HPSH_05945 - signal recognition particle protein 1125 39.82 0 1167073..1169691 - 872 188527937 valS HPSH_05950 - valyl-tRNA synthetase 1126 37.01 0 1169829..1170236 + 135 188527938 - HPSH_05955 - flagellar assembly protein FliW 1127 41.43 0 1170248..1171309 + 353 188527939 murG HPSH_05960 - N-acetylglucosaminyl transferase 1128 42.61 0 1171417..1173507 + 696 188527940 - HPSH_05965 - outer membrane protein HopI 1129 41.63 0 1173530..1177219 + 1229 188527941 - HPSH_05970 - outer membrane protein HopL 1130 42.72 0 1177233..1177988 + 251 188527942 - HPSH_05975 - pyrroline-5-carboxylate reductase 1131 36.52 0 1178032..1178565 + 177 188527943 - HPSH_05980 - cell filamentation protein 1132 41.61 0 1178623..1179045 - 140 188527944 - HPSH_05985 - putative metalloprotease 1133 43.03 +1 1179098..1179592 - 164 188527945 - HPSH_05990 - flavodoxin FldA 1134 39.35 0 1179681..1180262 - 193 188527946 - HPSH_05995 - hypothetical protein 1135 37.50 0 1180384..1180575 + 63 188527947 - HPSH_06000 - cation transport subunit for cbb3-type oxidase 1136 41.46 0 1180601..1181572 + 323 188527948 - HPSH_06005 - thioredoxin reductase 1137 40.35 0 1182809..1184446 + 545 188527949 - HPSH_06020 - glucose-6-phosphate isomerase (pgi) 1138 33.33 -1 1184434..1184520 - 28 188527950 - HPSH_06025 - hypothetical protein 1139 43.71 +1 1184755..1186170 + 471 188527951 - HPSH_06030 - outer membrane protein HofH 1140 29.17 -2 1186222..1186341 - 39 188527952 - HPSH_06035 - hypothetical protein 1141 44.36 +1 1186421..1188496 - 691 188527953 - HPSH_06040 - carbon starvation protein 1142 38.69 0 1188707..1189360 + 217 188527954 - HPSH_06045 - glutamine ABC transporter, permease protein 1143 40.33 0 1189363..1190034 + 223 188527955 - HPSH_06050 - glutamine ABC transporter, permease protein (glnP) 1144 38.82 0 1190036..1190782 + 248 188527956 - HPSH_06055 - glutamine ABC transporter, ATP-binding protein (glnQ) 1145 36.93 0 1190831..1191664 + 277 188527957 - HPSH_06060 - glutamine ABC transporter, periplasmic glutamine-binding protein 1146 34.78 0 1191657..1191725 + 22 188527958 - HPSH_06065 - hypothetical protein 1147 39.86 0 1191785..1192336 + 183 188527959 - HPSH_06070 - hypothetical protein 1148 43.63 +1 1192552..1193775 - 407 188527960 - HPSH_06075 - glucose/galactose transporter 1149 44.04 +1 1193905..1195212 - 435 188527961 - HPSH_06080 - hypothetical protein 1150 32.14 -1 1195325..1195408 - 27 188527962 - HPSH_06085 - hypothetical protein 1151 27.54 -2 1195547..1195684 + 45 188527963 - HPSH_06090 - hypothetical protein 1152 42.52 0 1195662..1197587 - 641 188527964 - HPSH_06095 - outer membrane protein (omp27) 1153 33.33 -1 1197737..1197847 + 36 188527965 - HPSH_06100 - hypothetical protein 1154 42.84 0 1197859..1198563 - 234 188527966 - HPSH_06105 - purine-nucleoside phosphorylase 1155 39.29 0 1198560..1199801 - 413 188527967 - HPSH_06110 - phosphopentomutase 1156 44.87 +1 1199813..1201069 - 418 188527968 - HPSH_06115 - pyrimidine nucleoside transport protein (nupC) 1157 40.62 0 1201396..1202727 + 443 188527969 - HPSH_06120 - multidrug-efflux transporter 38.76 MEAN 4.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0