IslandPath Analysis: Helicobacter pylori Shi470



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.76   STD DEV: 4.11
Helicobacter pylori Shi470, complete genome - 1..1608548
1569 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1013	 28.79	-2	1055015..1055080	-	21	188527825	-	HPSH_05355	-	hypothetical protein
1014	 41.19	0	1055071..1056597	-	508	188527826	guaA	HPSH_05360	-	bifunctional GMP synthase/glutamine amidotransferase protein
1015	 35.99	0	1056608..1057096	-	162	188527827	-	HPSH_05365	-	hypothetical protein
1016	 41.70	0	1057257..1059647	-	796	188527828	-	HPSH_05370	-	biotin sulfoxide reductase (bisC)
1017	 36.72	0	1059747..1060337	-	196	188527829	-	HPSH_05375	-	hypothetical protein
1018	 41.04	0	1060363..1061685	-	440	188527830	-	HPSH_05380	-	nifS-like protein
1019	 36.83	0	1061704..1062018	-	104	188527831	-	HPSH_05385	-	protein kinase C inhibitor (SP:P16436)
1020	 41.03	0	1062099..1063085	+	328	188527832	pheS	HPSH_05390	-	phenylalanyl-tRNA synthetase subunit alpha
1021	 39.78	0	1063085..1065379	+	764	188527833	pheT	HPSH_05395	-	phenylalanyl-tRNA synthetase subunit beta
1022	 39.22	0	1065395..1066684	+	429	188527834	-	HPSH_05400	-	3-phosphoshikimate 1-carboxyvinyltransferase
1023	 39.39	0	1066674..1067498	+	274	188527835	ispH	HPSH_05405	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
1024	 40.63	0	1067619..1069277	+	552	188527836	rpsA	HPSH_05410	-	30S ribosomal protein S1
1025	 37.10	0	1069306..1069650	+	114	188527837	-	HPSH_05415	-	hypothetical protein
1026	 41.78	0	1069839..1071413	+	524	188527838	-	HPSH_05420	-	D-3-phosphoglycerate dehydrogenase
1027	 39.76	0	1071423..1073273	+	616	188527839	-	HPSH_05425	-	hypothetical protein
1028	 37.52	0	1073283..1073951	+	222	188527840	-	HPSH_05430	-	hypothetical protein
1029	 35.44	0	1073953..1074711	+	252	188527841	-	HPSH_05435	-	hypothetical protein
1030	 38.68	0	1074715..1075650	+	311	188527842	-	HPSH_05440	-	CheA-MCP interaction modulator
1031	 43.35	+1	1075708..1078152	+	814	188527843	-	HPSH_05445	-	autophosphorylating histidine kinase
1032	 39.16	0	1078149..1078646	+	165	188527844	-	HPSH_05450	-	purine-binding chemotaxis protein (cheW)
1033	 40.92	0	1078910..1079410	-	166	188527845	-	HPSH_05455	-	thiol peroxidase
1034	 39.25	0	1079634..1080275	+	213	188527846	-	HPSH_05460	-	iron-dependent superoxide dismutase
1035	 38.89	0	1080327..1081046	+	239	188527847	-	HPSH_05465	-	hypothetical protein
1036	 38.01	0	1081074..1082933	-	619	188527848	-	HPSH_05470	-	primosome assembly protein PriA
1037	 34.18	-1	1082918..1083154	-	78	188527849	-	HPSH_05475	-	hypothetical protein
1038	 32.89	-1	1083167..1083394	-	75	188527850	-	HPSH_05480	-	hypothetical protein
1039	 36.55	0	1083597..1084343	+	248	188527851	-	HPSH_05485	-	hypothetical protein
1040	 36.55	0	1084351..1084878	-	175	188527852	-	HPSH_05490	-	hypothetical protein
1041	 29.71	-2	1084844..1084981	+	45	188527853	-	HPSH_05495	-	hypothetical protein
1042	 37.42	0	1086271..1087101	+	276	188527854	-	HPSH_05510	-	protoporphyrinogen oxidase (hemK)
1043	 44.32	+1	1087168..1088514	+	448	188527855	-	HPSH_05515	-	glutamate dehydrogenase
1044	 37.37	0	1088529..1089890	-	453	188527856	-	HPSH_05520	-	alpha-(1,3)-fucosyltransferase
1045	 40.34	0	1089900..1092710	-	936	188527857	-	HPSH_05525	-	cytochrome c-type biogenesis protein
1046	 35.42	0	1092719..1093390	-	223	188527858	-	HPSH_05530	-	hypothetical protein
1047	 37.60	0	1093463..1094470	-	335	188527859	hemH	HPSH_05535	-	ferrochelatase
1048	 35.65	0	1094526..1094957	+	143	188527860	-	HPSH_05540	-	hypothetical protein
1049	 41.70	0	1094958..1095638	+	226	188527861	-	HPSH_05545	-	hypothetical protein
1050	 40.78	0	1095662..1097890	-	742	188527862	-	HPSH_05550	-	putative outer membrane protein
1051	 41.45	0	1098049..1098615	-	188	188527863	dcd	HPSH_05555	-	deoxycytidine triphosphate deaminase
1052	 43.31	+1	1098745..1099215	+	156	188527864	-	HPSH_05560	-	biotin carboxyl carrier protein (fabE)
1053	 43.93	+1	1099221..1100588	+	455	188527865	-	HPSH_05565	-	biotin carboxylase
1054	 33.02	-1	1100681..1101643	+	320	188527866	-	HPSH_05570	-	putative type II DNA modification enzyme (methyltransferase)
1055	 29.14	-2	1101643..1102191	+	182	188527867	-	HPSH_05575	-	hypothetical protein
1056	 37.36	0	1102240..1102884	+	214	188527868	-	HPSH_05580	-	hypothetical protein
1057	 39.18	0	1102881..1104008	+	375	188527869	-	HPSH_05585	-	spore coat polysaccharide biosynthesis protein C
1058	 39.67	0	1104330..1105355	+	341	188527870	nrdF	HPSH_05595	-	ribonucleotide-diphosphate reductase subunit beta
1059	 42.86	0	1105365..1105994	+	209	188527871	pcm	HPSH_05600	-	protein-L-isoaspartate O-methyltransferase
1060	 36.99	0	1106005..1107042	+	345	188527872	-	HPSH_05605	-	hypothetical protein
1061	 41.98	0	1107043..1107771	+	242	188527873	truA	HPSH_05610	-	tRNA pseudouridine synthase A
1062	 40.10	0	1107765..1108799	-	344	188527874	-	HPSH_05615	-	UDP-glucose 4-epimerase
1063	 38.09	0	1109329..1110864	+	511	188527875	-	HPSH_05630	-	putative outer membrane protein
1064	 42.23	0	1110886..1111638	+	250	188527876	-	HPSH_05635	-	short chain alcohol dehydrogenase
1065	 42.38	0	1111825..1112697	-	290	188527877	-	HPSH_05640	-	hypothetical protein
1066	 42.42	0	1112767..1113393	-	208	188527878	-	HPSH_05645	-	2-keto-3-deoxy-6-phosphogluconate aldolase
1067	 42.86	0	1113412..1115238	-	608	188527879	-	HPSH_05650	-	phosphogluconate dehydratase
1068	 37.48	0	1115304..1116581	+	425	188527880	-	HPSH_05655	-	glucose-6-phosphate 1-dehydrogenase
1069	 39.33	0	1116592..1117275	+	227	188527881	-	HPSH_05660	-	glucose-6-phosphate 1-dehydrogenase (devB)
1070	 46.29	+1	1117262..1118272	+	336	188527882	glk	HPSH_05665	-	glucokinase
1071	 40.84	0	1118434..1119486	+	350	188527883	-	HPSH_05670	-	NADP-dependent alcohol dehydrogenase
1072	 35.49	0	1119498..1120658	-	386	188527884	-	HPSH_05675	-	putative lipopolysaccharide biosynthesis protein
1073	 35.77	0	1120791..1121981	-	396	188527885	-	HPSH_05680	-	putative lipopolysaccharide biosynthesis protein
1074	 39.60	0	1122161..1123468	+	435	188527886	-	HPSH_05685	-	hypothetical protein
1075	 40.18	0	1123475..1124146	-	223	188527887	-	HPSH_05690	-	outer membrane protein (omp23)
1076	 41.18	0	1124436..1124996	+	186	188527888	-	HPSH_05695	-	pyruvate flavodoxin oxidoreductase subunit gamma
1077	 43.00	+1	1125012..1125404	+	130	188527889	porD	HPSH_05700	-	pyruvate flavodoxin oxidoreductase subunit delta
1078	 45.42	+1	1125414..1126637	+	407	188527890	porA	HPSH_05705	-	pyruvate flavodoxin oxidoreductase subunit alpha
1079	 43.39	+1	1126650..1127594	+	314	188527891	-	HPSH_05710	-	pyruvate ferredoxin oxidoreductase, beta subunit
1080	 41.50	0	1127704..1129026	+	440	188527892	-	HPSH_05715	-	adenylosuccinate lyase
1081	 38.85	0	1129095..1129928	+	277	188527893	-	HPSH_05720	-	outer membrane protein Horl
1082	 40.21	0	1129925..1131901	-	658	188527894	-	HPSH_05725	-	excinuclease ABC subunit B
1083	 34.90	0	1132042..1132425	-	127	188527895	-	HPSH_05730	-	hypothetical protein
1084	 40.28	0	1132422..1133630	-	402	188527896	-	HPSH_05735	-	conserved hypothetical mosaic CUP0956/HP1116/jhp1044-like protein
1085	 30.77	-1	1133983..1134060	-	25	188527897	-	HPSH_05740	-	hypothetical protein
1086	 37.87	0	1134057..1134827	-	256	188527898	-	HPSH_05745	-	cysteine-rich protein X
1087	 36.67	0	1134830..1134919	-	29	188527899	-	HPSH_05750	-	hypothetical protein
1088	 43.19	+1	1135096..1136799	-	567	188527900	-	HPSH_05755	-	gamma-glutamyltranspeptidase
1089	 39.48	0	1137004..1138824	-	606	188527901	flgK	HPSH_05760	-	flagellar hook-associated protein FlgK
1090	 36.55	0	1138826..1139260	-	144	188527902	-	HPSH_05765	-	hypothetical protein
1091	 36.24	0	1139390..1140352	-	320	188527903	-	HPSH_05770	-	type II DNA modification enzyme (methyltransferase)
1092	 30.00	-2	1140373..1140462	+	29	188527904	-	HPSH_05775	-	hypothetical protein
1093	 39.71	0	1140483..1140686	-	67	188527905	-	HPSH_05780	-	flgM protein
1094	 30.43	-2	1140750..1140956	-	68	188527906	-	HPSH_05785	-	hypothetical protein
1095	 44.26	+1	1140988..1141536	-	182	188527907	-	HPSH_05790	-	peptidyl-prolyl cis-trans isomerase
1096	 38.15	0	1141523..1142518	-	331	188527908	-	HPSH_05795	-	hypothetical protein
1097	 39.49	0	1142526..1143077	-	183	188527909	-	HPSH_05800	-	peptidoglycan-associated lipoprotein precursor
1098	 37.64	0	1143144..1144397	-	417	188527910	tolB	HPSH_05805	-	translocation protein TolB
1099	 34.32	-1	1144394..1145206	-	270	188527911	-	HPSH_05810	-	hypothetical protein
1100	 35.82	0	1145225..1145626	-	133	188527912	-	HPSH_05815	-	biopolymer transport protein
1101	 38.42	0	1145679..1146248	-	189	188527913	-	HPSH_05820	-	biopolymer transport protein
1102	 44.09	+1	1146259..1146630	-	123	188527914	atpC	HPSH_05825	-	F0F1 ATP synthase subunit epsilon
1103	 44.75	+1	1146641..1148050	-	469	188527915	-	HPSH_05830	-	F0F1 ATP synthase subunit beta
1104	 36.98	0	1148070..1148975	-	301	188527916	-	HPSH_05835	-	F0F1 ATP synthase subunit gamma
1105	 44.38	+1	1148990..1150501	-	503	188527917	-	HPSH_05840	-	F0F1 ATP synthase subunit alpha
1106	 34.99	0	1150524..1151066	-	180	188527918	-	HPSH_05845	-	F0F1 ATP synthase subunit delta
1107	 33.53	-1	1151067..1151582	-	171	188527919	-	HPSH_05850	-	F0F1 ATP synthase subunit B
1108	 42.53	0	1151586..1152020	-	144	188527920	-	HPSH_05855	-	F0F1 ATP synthase subunit B'
1109	 38.72	0	1152131..1153003	-	290	188527921	-	HPSH_05860	-	plasmid replication-partition related protein
1110	 39.97	0	1153006..1153803	-	265	188527922	-	HPSH_05865	-	SpoOJ regulator (soj)
1111	 38.65	0	1153806..1154444	-	212	188527923	-	HPSH_05870	-	biotin--protein ligase
1112	 40.80	0	1154441..1155337	-	298	188527924	fmt	HPSH_05875	-	methionyl-tRNA formyltransferase
38.76	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.