IslandPath Analysis: Helicobacter pylori Shi470



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.76   STD DEV: 4.11
Helicobacter pylori Shi470, complete genome - 1..1608548
1569 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
58	 37.32	0	56631..57056	+	141	188526870	-	HPSH_00300	-	hypothetical protein
59	 35.04	0	57058..57408	+	116	188526871	-	HPSH_00305	-	hypothetical protein
60	 43.86	+1	59832..60629	-	265	188526872	-	HPSH_00320	-	urease accessory protein (ureH)
61	 44.33	+1	60629..61228	-	199	188526873	-	HPSH_00325	-	urease accessory protein
62	 40.73	0	61257..62000	-	247	188526874	-	HPSH_00330	-	urease accessory protein (ureF)
63	 40.16	0	62029..62541	-	170	188526875	ureE	HPSH_00335	-	urease accessory protein UreE
64	 44.39	+1	62543..63130	-	195	188526876	-	HPSH_00340	-	urea transporter
65	 24.32	-2	63198..63308	-	36	188526877	-	HPSH_00345	-	hypothetical protein
66	 44.39	+1	63323..65032	-	569	188526878	ureC	HPSH_00350	-	urease subunit alpha
67	 42.40	0	65036..65752	-	238	188526879	-	HPSH_00355	-	bifunctional urease subunit gamma/beta
68	 36.29	0	66115..66588	-	157	188526880	lspA	HPSH_00360	-	lipoprotein signal peptidase
69	 40.51	0	66582..67919	-	445	188526881	-	HPSH_00365	-	urease protein (ureC)
70	 39.26	0	68009..68278	+	89	188526882	rpsT	HPSH_00370	-	30S ribosomal protein S20
71	 42.49	0	68395..69453	+	352	188526883	prfA	HPSH_00375	-	peptide chain release factor 1
72	 42.35	0	69844..70098	+	84	188526884	-	HPSH_00380	-	hypothetical protein
73	 43.48	+1	70176..71417	+	413	188526885	-	HPSH_00385	-	outer membrane protein HorA
74	 42.17	0	71672..73459	+	595	188526886	-	HPSH_00390	-	hypothetical protein
75	 37.12	0	73754..73885	+	43	188526887	-	HPSH_00395	-	hypothetical protein
76	 39.22	0	73889..75910	-	673	188526888	-	HPSH_00400	-	methyl-accepting chemotaxis transducer (tlpC)
77	 42.56	0	76058..76447	-	129	188526889	rpsI	HPSH_00405	-	30S ribosomal protein S9
78	 40.85	0	76444..76869	-	141	188526890	rplM	HPSH_00410	-	50S ribosomal protein L13
79	 31.43	-1	76975..77079	-	34	188526891	-	HPSH_00415	-	hypothetical protein
80	 38.10	0	77060..77248	-	62	188526892	-	HPSH_00420	-	hypothetical protein
81	 40.61	0	77255..78601	-	448	188526893	-	HPSH_00425	-	malate:quinone oxidoreductase
82	 39.67	0	78661..80034	-	457	188526894	-	HPSH_00430	-	hypothetical protein
83	 38.97	0	80054..82039	-	661	188526895	-	HPSH_00435	-	RNA polymerase sigma factor RpoD
84	 43.10	+1	82230..82925	-	231	188526896	-	HPSH_00440	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
85	 43.01	+1	82936..83865	-	309	188526897	-	HPSH_00445	-	malonyl coenzyme A-acyl carrier protein transacylase
86	 40.17	0	85119..85952	+	277	188526898	-	HPSH_00465	-	type II restriction enzyme M protein (hsdM)
87	 39.17	0	85970..86860	-	296	188526899	-	HPSH_00470	-	alpha-1,2-fucosyltransferase
88	 37.48	0	86959..87489	-	176	188526900	-	HPSH_00475	-	hypothetical protein
89	 40.63	0	87562..88506	+	314	188526901	-	HPSH_00480	-	2-hydroxyacid dehydrogenase
90	 41.88	0	88834..89547	-	237	188526902	-	HPSH_00485	-	hypothetical protein
91	 40.18	0	89652..91112	-	486	188526903	-	HPSH_00490	-	threonine synthase
92	 39.37	0	91315..93351	+	678	188526904	-	HPSH_00495	-	methyl-accepting chemotaxis protein (tlpA)
93	 38.12	0	93351..94457	+	368	188526905	-	HPSH_00500	-	hypothetical protein
94	 35.56	0	94573..95334	+	253	188526906	-	HPSH_00505	-	hypothetical protein
95	 38.31	0	95317..96099	-	260	188526907	-	HPSH_00510	-	hypothetical protein
96	 42.05	0	96130..97827	-	565	188526908	-	HPSH_00515	-	methyl-accepting chemotaxis protein (tlpB)
97	 39.23	0	98036..99781	-	581	188526909	-	HPSH_00520	-	2',3'-cyclic-nucleotide 2'-phosphodiesterase
98	 44.87	+1	99921..100388	-	155	188526910	-	HPSH_00525	-	S-ribosylhomocysteinase
99	 48.03	+2	100423..101565	-	380	188526911	-	HPSH_00530	-	cystathionine gamma-synthase/cystathionine beta-lyase
100	 46.41	+1	101586..102503	-	305	188526912	-	HPSH_00535	-	cysteine synthetase
101	 42.67	0	103322..105184	-	620	188526913	dnaK	HPSH_00550	-	molecular chaperone DnaK
102	 41.49	0	105215..105790	-	191	188526914	-	HPSH_00555	-	co-chaperone and heat shock protein 24
103	 38.15	0	105790..106620	-	276	188526915	-	HPSH_00560	-	heat-inducible transcription repressor
104	 40.25	0	106915..107478	+	187	188526916	-	HPSH_00565	-	hypothetical protein
105	 37.04	0	107500..107796	+	98	188526917	-	HPSH_00570	-	hypothetical protein
106	 37.53	0	107821..109704	-	627	188526918	-	HPSH_00575	-	hypothetical protein
107	 46.08	+1	109767..111311	-	514	188526919	-	HPSH_00580	-	flagellin B
108	 40.39	0	111477..113687	+	736	188526920	-	HPSH_00585	-	DNA topoisomerase I
109	 38.71	0	113677..114606	+	309	188526921	-	HPSH_00590	-	hypothetical protein
110	 33.25	-1	114756..115994	-	412	188526922	-	HPSH_00595	-	hypothetical protein
111	 33.93	-1	116278..117291	-	337	188526923	-	HPSH_00600	-	hypothetical protein
112	 42.31	0	117391..119829	-	812	188526924	-	HPSH_00605	-	phosphoenolpyruvate synthase
113	 40.35	0	120035..120148	+	37	188526925	-	HPSH_00610	-	hypothetical protein
114	 41.22	0	120189..122027	+	612	188526926	thrS	HPSH_00615	-	threonyl-tRNA synthetase
115	 38.73	0	122024..122635	+	203	188526927	infC	HPSH_00620	-	translation initiation factor IF-3
116	 41.03	0	122616..122810	+	64	188526928	rpmI	HPSH_00625	-	50S ribosomal protein L35
117	 43.02	+1	122905..123255	+	116	188526929	rplT	HPSH_00630	-	50S ribosomal protein L20
118	 41.81	0	123466..124326	+	286	188526930	-	HPSH_00635	-	outer membrane protein HorB
119	 34.15	-1	124378..124500	+	40	188526931	-	HPSH_00640	-	hypothetical protein
120	 37.04	0	124678..125109	+	143	188526932	-	HPSH_00645	-	hypothetical protein
121	 38.16	0	125513..126382	+	289	188526933	-	HPSH_00650	-	hypothetical protein
122	 41.29	0	126812..127012	+	66	188526934	-	HPSH_00655	-	hypothetical protein
123	 42.91	+1	127248..128615	-	455	188526935	-	HPSH_00660	-	L-serine deaminase
124	 38.81	0	128615..129856	-	413	188526936	-	HPSH_00665	-	hypothetical protein
125	 39.78	0	129919..130011	+	30	188526937	-	HPSH_00670	-	hypothetical protein
126	 44.52	+1	130038..131387	+	449	188526938	-	HPSH_00675	-	tyrosine-regulated 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase
127	 34.07	-1	131466..131600	+	44	188526939	-	HPSH_00680	-	hypothetical protein
128	 40.52	0	131829..132287	-	152	188526940	-	HPSH_00685	-	bacterioferritin comigratory protein
129	 39.31	0	132297..132932	-	211	188526941	-	HPSH_00690	-	hypothetical protein
130	 43.15	+1	132925..134370	-	481	188526942	-	HPSH_00695	-	conserved hypothetical iron-sulfur protein
131	 39.92	0	134399..135127	-	242	188526943	-	HPSH_00700	-	conserved hypothetical secreted protein
132	 43.52	+1	135348..136997	+	549	188526944	-	HPSH_00705	-	L-lactate permease
133	 43.42	+1	137046..138701	+	551	188526945	-	HPSH_00710	-	L-lactate permease (lctP)
134	 37.82	0	138725..139594	-	289	188526946	-	HPSH_00715	-	A/G-specific adenine glycosylase
135	 42.37	0	139712..141160	-	482	188526947	-	HPSH_00720	-	C(4)-dicarboxylates and tricarboxylates/succinate antiporter
136	 42.06	0	141330..142796	+	488	188526948	-	HPSH_00725	-	cytochrome c oxidase, heme b and copper-binding subunit, membrane-bound (fixN)
137	 42.49	0	142809..143507	+	232	188526949	-	HPSH_00730	-	cytochrome c oxidase monoheme subunit
138	 34.70	0	143518..143736	+	72	188526950	-	HPSH_00735	-	cbb3-type cytochrome c oxidase subunit Q (CcoQ)
139	 42.32	0	143738..144616	+	292	188526951	-	HPSH_00740	-	cytochrome c oxidase diheme subunit
140	 34.78	0	144627..144833	+	68	188526952	-	HPSH_00745	-	hypothetical protein
141	 30.56	-1	144830..144937	+	35	188526953	-	HPSH_00750	-	hypothetical protein
142	 37.18	0	144973..145518	+	181	188526954	-	HPSH_00755	-	hypothetical protein
143	 37.29	0	145530..146111	+	193	188526955	-	HPSH_00760	-	hypothetical protein
144	 38.28	0	146200..146967	+	255	188526956	-	HPSH_00765	-	hypothetical protein
145	 40.60	0	146964..147830	-	288	188526957	-	HPSH_00770	-	hypothetical protein
146	 44.06	+1	147929..148972	+	347	188526958	recA	HPSH_00775	-	recombinase A
147	 43.25	+1	148984..150264	+	426	188526959	eno	HPSH_00780	-	phosphopyruvate hydratase
148	 38.77	0	150257..150532	+	91	188526960	-	HPSH_00785	-	hypothetical protein
149	 38.53	0	150548..151144	+	198	188526961	-	HPSH_00790	-	hypothetical protein
150	 39.06	0	151149..151637	+	162	188526962	aroK	HPSH_00795	-	shikimate kinase
151	 40.44	0	151658..152614	+	318	188526963	-	HPSH_00800	-	hypothetical protein
152	 35.40	0	152611..153723	-	370	188526964	-	HPSH_00805	-	putative lipopolysaccharide biosynthesis protein
153	 40.74	0	153874..154791	+	305	188526965	-	HPSH_00810	-	hypothetical protein
154	 44.70	+1	155240..155371	-	43	188526966	-	HPSH_00815	-	hypothetical protein
155	 41.49	0	155550..156272	-	240	188526967	-	HPSH_00820	-	hypothetical protein
156	 39.40	0	156273..157244	-	323	188526968	-	HPSH_00825	-	delta-aminolevulinic acid dehydratase
157	 34.68	0	157267..158598	-	443	188526969	-	HPSH_00830	-	putative histidine kinase sensor protein
38.76	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.