version 1.0
Helicobacter pylori Shi470, complete genome - 1..1608548 1569 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 983 40.27 0 1019119..1020429 - 436 188527795 - HPSH_05155 - adenosylmethionine--8-amino-7-oxononanoate transaminase 984 36.55 0 1020469..1022022 + 517 188527796 - HPSH_05160 - conserved hypothetical secreted protein 985 42.44 0 1022037..1023518 + 493 188527797 - HPSH_05165 - cell division protein 986 43.60 +1 1023653..1024801 + 382 188527798 - HPSH_05170 - cell division protein FtsZ 987 38.89 0 1024868..1024975 - 35 188527799 - HPSH_05175 - hypothetical protein 988 38.55 0 1026463..1027287 - 274 188527800 - HPSH_05200 - hypothetical protein 989 32.78 -1 1027300..1027479 - 59 188527801 - HPSH_05205 - hypothetical protein 990 40.50 0 1027745..1028107 - 120 188527802 xseA HPSH_05210 - exodeoxyribonuclease VII large subunit 991 37.04 0 1028113..1028193 - 26 188527803 - HPSH_05215 - hypothetical protein 992 31.16 -1 1028402..1029136 - 244 188527804 - HPSH_05220 - hypothetical protein 993 34.68 0 1029146..1029367 - 73 188527805 - HPSH_05225 - hypothetical protein 994 32.44 -1 1029367..1029702 - 111 188527806 - HPSH_05230 - hypothetical protein 995 33.80 -1 1029689..1030114 - 141 188527807 - HPSH_05235 - hypothetical protein 996 36.64 0 1030253..1030675 - 140 188527808 - HPSH_05240 - hypothetical protein 997 35.84 0 1030685..1030963 - 92 188527809 - HPSH_05245 - hypothetical protein 998 35.17 0 1030976..1031629 - 217 188527810 - HPSH_05250 - phage/colicin/tellurite resistance cluster terY protein 999 27.34 -2 1036094..1036360 - 88 188527811 - HPSH_05255 - hypothetical protein 1000 36.13 0 1036552..1038303 + 583 188527812 - HPSH_05260 - hypothetical protein 1001 40.71 0 1041604..1042443 + 279 188527813 - HPSH_05290 - hypothetical protein 1002 38.89 0 1042450..1042539 + 29 188527814 - HPSH_05295 - hypothetical protein 1003 40.69 0 1042645..1044492 - 615 188527815 - HPSH_05300 - arginine decarboxylase 1004 36.84 0 1044507..1045676 - 389 188527816 - HPSH_05305 - type 1 capsular polysaccharide biosynthesis protein J 1005 39.16 0 1045680..1046108 - 142 188527817 - HPSH_05310 - hypothetical protein 1006 38.17 0 1046124..1046909 - 261 188527818 - HPSH_05315 - hypothetical protein 1007 36.21 0 1046913..1047920 - 335 188527819 - HPSH_05320 - hypothetical protein 1008 38.51 0 1047921..1049909 - 662 188527820 - HPSH_05325 - methionyl-tRNA synthetase 1009 41.71 0 1050079..1051248 + 389 188527821 - HPSH_05330 - cyclopropane fatty acid synthase (cfa) 1010 37.45 0 1051251..1053122 - 623 188527822 - HPSH_05335 - hypothetical protein 1011 35.29 0 1054042..1054143 - 33 188527823 - HPSH_05345 - hypothetical protein 1012 37.04 0 1054236..1055018 - 260 188527824 - HPSH_05350 - hypothetical protein 1013 28.79 -2 1055015..1055080 - 21 188527825 - HPSH_05355 - hypothetical protein 1014 41.19 0 1055071..1056597 - 508 188527826 guaA HPSH_05360 - bifunctional GMP synthase/glutamine amidotransferase protein 1015 35.99 0 1056608..1057096 - 162 188527827 - HPSH_05365 - hypothetical protein 1016 41.70 0 1057257..1059647 - 796 188527828 - HPSH_05370 - biotin sulfoxide reductase (bisC) 1017 36.72 0 1059747..1060337 - 196 188527829 - HPSH_05375 - hypothetical protein 1018 41.04 0 1060363..1061685 - 440 188527830 - HPSH_05380 - nifS-like protein 1019 36.83 0 1061704..1062018 - 104 188527831 - HPSH_05385 - protein kinase C inhibitor (SP:P16436) 1020 41.03 0 1062099..1063085 + 328 188527832 pheS HPSH_05390 - phenylalanyl-tRNA synthetase subunit alpha 1021 39.78 0 1063085..1065379 + 764 188527833 pheT HPSH_05395 - phenylalanyl-tRNA synthetase subunit beta 1022 39.22 0 1065395..1066684 + 429 188527834 - HPSH_05400 - 3-phosphoshikimate 1-carboxyvinyltransferase 1023 39.39 0 1066674..1067498 + 274 188527835 ispH HPSH_05405 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1024 40.63 0 1067619..1069277 + 552 188527836 rpsA HPSH_05410 - 30S ribosomal protein S1 1025 37.10 0 1069306..1069650 + 114 188527837 - HPSH_05415 - hypothetical protein 1026 41.78 0 1069839..1071413 + 524 188527838 - HPSH_05420 - D-3-phosphoglycerate dehydrogenase 1027 39.76 0 1071423..1073273 + 616 188527839 - HPSH_05425 - hypothetical protein 1028 37.52 0 1073283..1073951 + 222 188527840 - HPSH_05430 - hypothetical protein 1029 35.44 0 1073953..1074711 + 252 188527841 - HPSH_05435 - hypothetical protein 1030 38.68 0 1074715..1075650 + 311 188527842 - HPSH_05440 - CheA-MCP interaction modulator 1031 43.35 +1 1075708..1078152 + 814 188527843 - HPSH_05445 - autophosphorylating histidine kinase 1032 39.16 0 1078149..1078646 + 165 188527844 - HPSH_05450 - purine-binding chemotaxis protein (cheW) 1033 40.92 0 1078910..1079410 - 166 188527845 - HPSH_05455 - thiol peroxidase 1034 39.25 0 1079634..1080275 + 213 188527846 - HPSH_05460 - iron-dependent superoxide dismutase 1035 38.89 0 1080327..1081046 + 239 188527847 - HPSH_05465 - hypothetical protein 1036 38.01 0 1081074..1082933 - 619 188527848 - HPSH_05470 - primosome assembly protein PriA 1037 34.18 -1 1082918..1083154 - 78 188527849 - HPSH_05475 - hypothetical protein 1038 32.89 -1 1083167..1083394 - 75 188527850 - HPSH_05480 - hypothetical protein 1039 36.55 0 1083597..1084343 + 248 188527851 - HPSH_05485 - hypothetical protein 1040 36.55 0 1084351..1084878 - 175 188527852 - HPSH_05490 - hypothetical protein 1041 29.71 -2 1084844..1084981 + 45 188527853 - HPSH_05495 - hypothetical protein 1042 37.42 0 1086271..1087101 + 276 188527854 - HPSH_05510 - protoporphyrinogen oxidase (hemK) 1043 44.32 +1 1087168..1088514 + 448 188527855 - HPSH_05515 - glutamate dehydrogenase 1044 37.37 0 1088529..1089890 - 453 188527856 - HPSH_05520 - alpha-(1,3)-fucosyltransferase 1045 40.34 0 1089900..1092710 - 936 188527857 - HPSH_05525 - cytochrome c-type biogenesis protein 1046 35.42 0 1092719..1093390 - 223 188527858 - HPSH_05530 - hypothetical protein 1047 37.60 0 1093463..1094470 - 335 188527859 hemH HPSH_05535 - ferrochelatase 1048 35.65 0 1094526..1094957 + 143 188527860 - HPSH_05540 - hypothetical protein 1049 41.70 0 1094958..1095638 + 226 188527861 - HPSH_05545 - hypothetical protein 1050 40.78 0 1095662..1097890 - 742 188527862 - HPSH_05550 - putative outer membrane protein 1051 41.45 0 1098049..1098615 - 188 188527863 dcd HPSH_05555 - deoxycytidine triphosphate deaminase 1052 43.31 +1 1098745..1099215 + 156 188527864 - HPSH_05560 - biotin carboxyl carrier protein (fabE) 1053 43.93 +1 1099221..1100588 + 455 188527865 - HPSH_05565 - biotin carboxylase 1054 33.02 -1 1100681..1101643 + 320 188527866 - HPSH_05570 - putative type II DNA modification enzyme (methyltransferase) 1055 29.14 -2 1101643..1102191 + 182 188527867 - HPSH_05575 - hypothetical protein 1056 37.36 0 1102240..1102884 + 214 188527868 - HPSH_05580 - hypothetical protein 1057 39.18 0 1102881..1104008 + 375 188527869 - HPSH_05585 - spore coat polysaccharide biosynthesis protein C 1058 39.67 0 1104330..1105355 + 341 188527870 nrdF HPSH_05595 - ribonucleotide-diphosphate reductase subunit beta 1059 42.86 0 1105365..1105994 + 209 188527871 pcm HPSH_05600 - protein-L-isoaspartate O-methyltransferase 1060 36.99 0 1106005..1107042 + 345 188527872 - HPSH_05605 - hypothetical protein 1061 41.98 0 1107043..1107771 + 242 188527873 truA HPSH_05610 - tRNA pseudouridine synthase A 1062 40.10 0 1107765..1108799 - 344 188527874 - HPSH_05615 - UDP-glucose 4-epimerase 1063 38.09 0 1109329..1110864 + 511 188527875 - HPSH_05630 - putative outer membrane protein 1064 42.23 0 1110886..1111638 + 250 188527876 - HPSH_05635 - short chain alcohol dehydrogenase 1065 42.38 0 1111825..1112697 - 290 188527877 - HPSH_05640 - hypothetical protein 1066 42.42 0 1112767..1113393 - 208 188527878 - HPSH_05645 - 2-keto-3-deoxy-6-phosphogluconate aldolase 1067 42.86 0 1113412..1115238 - 608 188527879 - HPSH_05650 - phosphogluconate dehydratase 1068 37.48 0 1115304..1116581 + 425 188527880 - HPSH_05655 - glucose-6-phosphate 1-dehydrogenase 1069 39.33 0 1116592..1117275 + 227 188527881 - HPSH_05660 - glucose-6-phosphate 1-dehydrogenase (devB) 1070 46.29 +1 1117262..1118272 + 336 188527882 glk HPSH_05665 - glucokinase 1071 40.84 0 1118434..1119486 + 350 188527883 - HPSH_05670 - NADP-dependent alcohol dehydrogenase 1072 35.49 0 1119498..1120658 - 386 188527884 - HPSH_05675 - putative lipopolysaccharide biosynthesis protein 1073 35.77 0 1120791..1121981 - 396 188527885 - HPSH_05680 - putative lipopolysaccharide biosynthesis protein 1074 39.60 0 1122161..1123468 + 435 188527886 - HPSH_05685 - hypothetical protein 1075 40.18 0 1123475..1124146 - 223 188527887 - HPSH_05690 - outer membrane protein (omp23) 1076 41.18 0 1124436..1124996 + 186 188527888 - HPSH_05695 - pyruvate flavodoxin oxidoreductase subunit gamma 1077 43.00 +1 1125012..1125404 + 130 188527889 porD HPSH_05700 - pyruvate flavodoxin oxidoreductase subunit delta 1078 45.42 +1 1125414..1126637 + 407 188527890 porA HPSH_05705 - pyruvate flavodoxin oxidoreductase subunit alpha 1079 43.39 +1 1126650..1127594 + 314 188527891 - HPSH_05710 - pyruvate ferredoxin oxidoreductase, beta subunit 1080 41.50 0 1127704..1129026 + 440 188527892 - HPSH_05715 - adenylosuccinate lyase 1081 38.85 0 1129095..1129928 + 277 188527893 - HPSH_05720 - outer membrane protein Horl 1082 40.21 0 1129925..1131901 - 658 188527894 - HPSH_05725 - excinuclease ABC subunit B 38.76 MEAN 4.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0