version 1.0
Helicobacter pylori HPAG1, complete genome - 1..1596366 1536 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 42 41.19 0 43157..44302 + 381 108562466 - HPAG1_0041 - GDP-D-mannose dehydratase 43 40.94 0 44295..45227 + 310 108562467 - HPAG1_0042 - GDP-fucose synthetase 44 41.54 0 45541..46539 - 332 108562468 - HPAG1_0043 - hydrogenase expression/formation protein 45 40.78 0 46542..48851 - 769 108562469 - HPAG1_0044 - transcriptional regulator 46 39.88 0 48791..49783 - 330 108562470 - HPAG1_0045 - hypothetical protein 47 39.54 0 49843..50535 - 230 108562471 - HPAG1_0046 - adenine specific DNA methyltransferase 48 39.51 0 50532..51599 - 355 108562472 - HPAG1_0047 - cytosine specific DNA methyltransferase 49 32.46 -1 51621..52652 - 343 108562473 - HPAG1_0048 - type II DNA modification enzyme 50 32.28 -1 52662..53231 - 189 108562474 - HPAG1_0049 - type II restriction enzyme 51 28.44 -2 53219..53443 - 74 108562475 - HPAG1_0050 - type II restriction enzyme 52 35.42 -1 53634..53777 - 47 108562476 - HPAG1_0051 - adenine/cytosine DNA methyltransferase 53 42.52 0 53815..55305 - 496 108562477 - HPAG1_0052 - sodium/proline symporter 54 40.81 0 55332..58889 - 1185 108562478 - HPAG1_0053 - proline/delta 1-pyrroline-5-carboxylate dehydrogenase 55 37.62 0 59216..59425 + 69 108562479 - HPAG1_0054 - hypothetical protein 56 31.25 -2 59510..59701 + 63 108562480 - HPAG1_0055 - M-protein 57 35.51 -1 59932..60528 + 198 108562481 - HPAG1_0056 - hypothetical protein 58 39.87 0 60529..61278 + 249 108562482 - HPAG1_0057 - hypothetical protein 59 39.05 0 61289..62494 + 401 108562483 - HPAG1_0058 - hypothetical protein 60 40.45 0 62404..63639 + 411 108562484 - HPAG1_0059 - hypothetical protein 61 38.38 0 63640..63738 + 32 108562485 - HPAG1_0060 - hypothetical protein 62 40.19 0 63764..64303 + 179 108562486 - HPAG1_0061 - hypothetical protein 63 41.38 0 64319..64579 + 86 108562487 - HPAG1_0062 - hypothetical protein 64 38.70 0 64589..66394 + 601 108562488 - HPAG1_0063 - hypothetical protein 65 38.10 0 66364..66783 + 139 108562489 - HPAG1_0064 - hypothetical protein 66 35.59 -1 66785..67138 + 117 108562490 - HPAG1_0065 - hypothetical protein 67 38.05 0 67131..67745 + 204 108562491 - HPAG1_0066 - ATP-binding protein 68 41.45 0 67751..69562 + 603 108562492 - HPAG1_0067 - ATP-binding protein 69 44.24 +1 69707..70504 - 265 108562493 - HPAG1_0068 - urease accessory protein UreH 70 44.83 +1 70504..71103 - 199 108562494 - HPAG1_0069 - urease accessory protein UreG 71 41.41 0 71132..71899 - 255 108562495 - HPAG1_0070 - urease accessory protein UreF 72 40.94 0 71911..72423 - 170 108562496 ureE HPAG1_0071 - urease accessory protein UreE 73 43.20 +1 72425..73012 - 195 108562497 - HPAG1_0072 - urease accessory protein/pH-dependent urea-transporter UreI 74 43.92 +1 73205..74914 - 569 108562498 ureC HPAG1_0073 - urease subunit alpha 75 41.84 0 74918..75634 - 238 108562499 - HPAG1_0074 - bifunctional urease subunit gamma/beta 76 36.92 0 75980..76453 - 157 108562500 lspA HPAG1_0075 - lipoprotein signal peptidase 77 41.33 0 76447..77784 - 445 108562501 - HPAG1_0076 - phosphoglucosamine mutase 78 38.52 0 77874..78143 + 89 108562502 rpsT HPAG1_0077 - 30S ribosomal protein S20 79 43.06 +1 78268..79326 + 352 108562503 prfA HPAG1_0078 - peptide chain release factor 1 80 41.47 0 79739..79996 + 85 108562504 - HPAG1_0079 - reminiscent outer membrane protein HorA 81 43.02 +1 80008..81711 + 567 108562505 - HPAG1_0080 - outer membrane protein HorA 82 41.91 0 81957..83693 + 578 108562506 - HPAG1_0081 - hypothetical protein 83 36.04 0 83867..83977 + 36 108562507 - HPAG1_0082 - hypothetical protein 84 39.07 0 84115..86136 - 673 108562508 - HPAG1_0083 - methyl-accepting chemotaxis protein 85 42.82 0 86288..86677 - 129 108562509 rpsI HPAG1_0084 - 30S ribosomal protein S9 86 42.02 0 86674..87099 - 141 108562510 rplM HPAG1_0085 - 50S ribosomal protein L13 87 36.51 0 87403..87591 - 62 108562511 - HPAG1_0086 - hypothetical protein 88 41.02 0 87598..88950 - 450 108562512 - HPAG1_0087 - hypothetical protein 89 40.10 0 89004..90377 - 457 108562513 - HPAG1_0088 - hypothetical protein 90 38.72 0 90398..92476 - 692 108562514 - HPAG1_0089 - RNA polymerase sigma factor RpoD 91 42.82 0 92666..93361 - 231 108562515 - HPAG1_0090 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 92 43.01 +1 93372..94301 - 309 108562516 - HPAG1_0091 - acyl-carrier-protein S-malonyltransferase 93 36.64 0 94738..95736 + 332 108562517 - HPAG1_0092 - HrgA protein 94 39.66 0 95740..96561 + 273 108562518 - HPAG1_0093 - type II adenine methyltransferase 95 40.29 0 96584..97489 - 301 108562519 - HPAG1_0094 - alpha-1,2-fucosyltransferase 96 36.72 0 97585..98115 - 176 108562520 - HPAG1_0095 - hypothetical protein 97 40.00 0 98188..99132 + 314 108562521 - HPAG1_0096 - 2-hydroxyacid dehydrogenase 98 40.90 0 99279..99992 - 237 108562522 - HPAG1_0097 - hypothetical protein 99 41.27 0 100097..101557 - 486 108562523 - HPAG1_0098 - threonine synthase 100 39.79 0 101761..103788 + 675 108562524 - HPAG1_0099 - methyl-accepting chemotaxis transmembrane sensory protein 101 38.66 0 103788..104894 + 368 108562525 - HPAG1_0100 - hypothetical protein 102 35.56 -1 105008..105769 + 253 108562526 - HPAG1_0101 - hypothetical protein 103 38.72 0 105752..106531 - 259 108562527 - HPAG1_0102 - hypothetical protein 104 41.46 0 106562..108259 - 565 108562528 - HPAG1_0103 - methyl-accepting chemotaxis protein 105 39.75 0 108461..110206 - 581 108562529 - HPAG1_0104 - 2',3'-cyclic-nucleotide 2'-phosphodiesterase 106 44.44 +1 110374..110841 - 155 108562530 - HPAG1_0105 - S-ribosylhomocysteinase 107 46.63 +2 110879..112021 - 380 108562531 - HPAG1_0106 - cystathionine gamma-synthase/cystathionine beta-lyase 108 46.80 +2 112042..112962 - 306 108562532 - HPAG1_0107 - cysteine synthetase 109 40.04 0 113121..113642 + 173 108562533 - HPAG1_0108 - hypothetical protein 110 43.21 +1 113876..115738 - 620 108562534 - HPAG1_0109 - molecular chaperone DnaK 111 41.15 0 115769..116344 - 191 108562535 - HPAG1_0110 - co-chaperone and heat shock protein 24 112 38.75 0 116344..117174 - 276 108562536 - HPAG1_0111 - heat-inducible transcription repressor 113 40.69 0 117385..118023 + 212 108562537 - HPAG1_0112 - hypothetical protein 114 40.74 0 118044..118340 + 98 108562538 - HPAG1_0113 - hypothetical protein 115 37.31 0 118350..120236 - 628 108562539 - HPAG1_0114 - hypothetical protein 116 46.54 +2 120296..121840 - 514 108562540 - HPAG1_0115 - flagellin B 117 39.76 0 122006..124216 + 736 108562541 - HPAG1_0116 - DNA topoisomerase I 118 39.81 0 124209..125135 + 308 108562542 - HPAG1_0117 - hypothetical protein 119 33.33 -1 125275..126492 - 405 108562543 - HPAG1_0118 - hypothetical protein 120 34.47 -1 126777..128009 - 410 108562544 - HPAG1_0119 - hypothetical protein 121 42.15 0 128097..130535 - 812 108562545 - HPAG1_0120 - phosphoenolpyruvate synthase 122 39.86 0 130715..130852 + 45 108562546 - HPAG1_0121 - hypothetical protein 123 41.44 0 130909..132747 + 612 108562547 thrS HPAG1_0122 - threonyl-tRNA synthetase 124 37.75 0 132744..133355 + 203 108562548 infC HPAG1_0123 - translation initiation factor IF-3 125 41.54 0 133336..133530 + 64 108562549 rpmI HPAG1_0124 - 50S ribosomal protein L35 126 41.88 0 133624..133974 + 116 108562550 rplT HPAG1_0125 - 50S ribosomal protein L20 127 42.16 0 134174..135034 + 286 108562551 - HPAG1_0126 - outer membrane protein HorB 128 33.33 -1 135086..135211 + 41 108562552 - HPAG1_0127 - hypothetical protein 129 36.81 0 135378..135809 + 143 108562553 - HPAG1_0128 - hypothetical protein 130 39.14 0 136221..137081 + 286 108562554 - HPAG1_0129 - hypothetical protein 131 42.62 0 137683..139050 - 455 108562555 - HPAG1_0130 - L-serine deaminase 132 39.05 0 139050..140291 - 413 108562556 - HPAG1_0131 - L-serine transporter 133 44.30 +1 140473..141822 + 449 108562557 - HPAG1_0132 - tyrosine-regulated 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 134 34.81 -1 142115..142249 + 44 108562558 - HPAG1_0133 - hypothetical protein 135 40.96 0 142480..142938 - 152 108562559 - HPAG1_0134 - bacterioferritin comigratory protein 136 38.99 0 142948..143583 - 211 108562560 - HPAG1_0135 - hypothetical protein 137 42.88 +1 143576..145021 - 481 108562561 - HPAG1_0136 - putative iron-sulfur protein 138 40.19 0 145051..145779 - 242 108562562 - HPAG1_0137 - hypothetical protein 139 43.70 +1 145999..147648 + 549 108562563 - HPAG1_0138 - L-lactate permease 140 42.51 0 147698..149353 + 551 108562564 - HPAG1_0139 - L-lactate permease 141 36.88 0 149377..150363 - 328 108562565 - HPAG1_0140 - A/G-specific adenine glycosylase 39.24 MEAN 3.61 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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