version 1.0
Helicobacter pylori HPAG1, complete genome - 1..1596366 1536 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 829 42.27 0 862576..863235 - 219 108563253 - HPAG1_0828 - thiamine phosphate pyrophosphorylase 830 43.09 +1 863228..864037 - 269 108563254 - HPAG1_0829 - thiamine biosynthesis protein 831 42.66 0 864034..864816 - 260 108563255 - HPAG1_0830 - hydroxyethylthiazole kinase 832 37.25 0 864901..867912 - 1003 108563256 - HPAG1_0831 - type I restriction enzyme R protein 833 37.29 0 868049..869287 - 412 108563257 - HPAG1_0832 - HP0790-like protein 834 41.01 0 869298..870821 - 507 108563258 - HPAG1_0833 - type I restriction enzyme M protein 835 41.63 0 871053..871739 + 228 108563259 - HPAG1_0834 - hypothetical protein 836 38.85 0 871762..872160 - 132 108563260 - HPAG1_0835 - hypothetical protein 837 37.41 0 872157..872696 - 179 108563261 - HPAG1_0836 - hypothetical protein 838 41.64 0 872693..874294 - 533 108563262 - HPAG1_0837 - ABC transporter, ATP-binding protein 839 41.92 0 874492..875469 + 325 108563263 - HPAG1_0838 - guanosine 5'-monophosphate oxidoreductase 840 30.81 -2 875466..875663 - 65 108563264 - HPAG1_0839 - hypothetical protein 841 41.11 0 875635..876213 - 192 108563265 - HPAG1_0840 - phosphoheptose isomerase 842 41.31 0 876206..877597 - 463 108563266 - HPAG1_0841 - ADP-heptose synthase 843 38.67 0 877594..878586 - 330 108563267 - HPAG1_0842 - ADP-L-glycero-D-mannoheptose-6-epimerase 844 35.63 0 878595..879116 - 173 108563268 - HPAG1_0843 - hypothetical protein 845 41.57 0 879106..879846 - 246 108563269 - HPAG1_0844 - hypothetical protein 846 39.43 0 879837..880508 - 223 108563270 - HPAG1_0845 - pantothenate kinase 847 37.45 0 880513..882189 - 558 108563271 - HPAG1_0846 - hypothetical protein 848 35.01 -1 882191..882847 - 218 108563272 - HPAG1_0847 - hypothetical protein 849 42.69 0 882844..883281 - 145 108563273 dut HPAG1_0848 - deoxyuridine 5'-triphosphate nucleotidohydrolase 850 38.79 0 883271..883765 - 164 108563274 greA HPAG1_0849 - transcription elongation factor GreA 851 38.69 0 883806..884888 - 360 108563275 lpxB HPAG1_0850 - lipid-A-disaccharide synthase 852 34.20 -1 884888..885349 - 153 108563276 - HPAG1_0851 - hypothetical protein 853 39.55 0 885353..885706 - 117 108563277 hypA HPAG1_0852 - hydrogenase nickel incorporation protein 854 45.85 +1 885765..887921 - 718 108563278 flgE HPAG1_0853 - flagellar hook protein FlgE 855 41.77 0 888140..888874 - 244 108563279 - HPAG1_0854 - CDP-diacylglycerol pyrophosphatase 856 36.97 0 889234..889563 + 109 108563280 - HPAG1_0855 - alkylphosphonate uptake protein 857 36.11 0 889615..889830 - 71 108563281 - HPAG1_0856 - hypothetical protein 858 40.18 0 889912..890787 - 291 108563282 - HPAG1_0857 - hypothetical protein 859 42.23 0 890932..892449 - 505 108563283 - HPAG1_0858 - catalase 860 44.36 +1 892772..895147 + 791 108563284 - HPAG1_0859 - iron-regulated outer membrane protein 861 43.04 +1 895148..895621 - 157 108563285 ruvC HPAG1_0860 - Holliday junction resolvase 862 38.39 0 895752..896483 + 243 108563286 - HPAG1_0861 - hypothetical protein 863 35.06 -1 897594..898460 - 288 108563287 - HPAG1_0862 - hypothetical protein 864 39.67 0 898513..899064 - 183 108563288 ruvA HPAG1_0863 - Holliday junction DNA helicase motor protein 865 37.07 0 899090..900934 - 614 108563289 - HPAG1_0864 - hypothetical protein 866 38.32 0 901105..902487 + 460 108563290 - HPAG1_0865 - virulence factor mviN protein 867 38.84 0 902488..903885 + 465 108563291 cysS HPAG1_0866 - cysteinyl-tRNA synthetase 868 41.87 0 904115..908005 + 1296 108563292 - HPAG1_0867 - vacuolating cytotoxin 869 34.41 -1 908125..909150 - 341 108563293 - HPAG1_0868 - lipopolysaccharide 1,2-glycosyltransferase 870 39.58 0 909309..910076 - 255 108563294 - HPAG1_0869 - iron(III) dicitrate ABC transporter, ATP-binding protein 871 46.18 +1 910076..911056 - 326 108563295 - HPAG1_0870 - iron(III) dicitrate ABC transporter, permease protein 872 42.92 +1 911049..911903 - 284 108563296 - HPAG1_0871 - hypothetical protein 873 42.29 0 912043..912567 + 174 108563297 - HPAG1_0872 - hypothetical protein 874 32.96 -1 912673..912939 - 88 108563298 - HPAG1_0873 - hypothetical protein 875 34.66 -1 912920..913297 - 125 108563299 - HPAG1_0874 - hypothetical protein 876 29.95 -2 913376..913582 + 68 108563300 - HPAG1_0875 - hypothetical protein 877 45.37 +1 913627..915861 - 744 108563301 - HPAG1_0876 - outer membrane protein BabA 878 38.89 0 916338..917003 + 221 108563302 - HPAG1_0877 - hypothetical protein 879 44.29 +1 916954..918066 - 370 108563303 - HPAG1_0878 - hydrogenase expression/formation protein HypD 880 41.35 0 918084..918320 - 78 108563304 - HPAG1_0879 - hydrogenase expression/formation protein HypC 881 41.29 0 918320..919048 - 242 108563305 - HPAG1_0880 - hydrogenase expression/formation protein HypB 882 31.22 -2 919128..919316 + 62 108563306 - HPAG1_0881 - hypothetical protein 883 40.00 0 919291..919590 - 99 108563307 - HPAG1_0882 - hypothetical protein 884 39.33 0 919787..920053 - 88 108563308 - HPAG1_0883 - acetate kinase 885 41.19 0 920149..920670 - 173 108563309 - HPAG1_0884 - acetate kinase 886 44.81 +1 920685..921224 - 179 108563310 - HPAG1_0885 - phosphotransacetylase 887 40.12 0 921268..922122 - 284 108563311 - HPAG1_0886 - phosphotransacetylase 888 42.86 +1 922109..922234 - 41 108563312 - HPAG1_0887 - phosphotransacetylase 889 41.65 0 922483..924057 + 524 108563313 - HPAG1_0888 - hypothetical protein 890 41.26 0 924108..925091 + 327 108563314 flgD HPAG1_0889 - flagellar basal body rod modification protein 891 42.79 0 925088..926905 + 605 108563315 flgE HPAG1_0890 - flagellar hook protein FlgE 892 33.16 -1 926957..927544 + 195 108563316 - HPAG1_0891 - hypothetical protein 893 37.41 0 927554..928705 + 383 108563317 - HPAG1_0892 - adenine specific DNA methyltransferase 894 39.94 0 928709..930736 + 675 108563318 - HPAG1_0893 - rep helicase, single-stranded DNA-dependent ATPase 895 29.63 -2 931282..931470 - 62 108563319 - HPAG1_0894 - hypothetical protein 896 45.69 +1 931575..933128 + 517 108563320 - HPAG1_0895 - outer membrane protein HopC 897 43.52 +1 933150..934739 + 529 108563321 - HPAG1_0896 - outer membrane protein HopB 898 40.78 0 935447..936991 - 514 108563322 - HPAG1_0897 - outer membrane protein HopG 899 41.97 0 937238..939679 - 813 108563323 - HPAG1_0898 - iron-regulated outer membrane protein 900 41.44 0 939938..940369 - 143 108563324 - HPAG1_0899 - hypothetical protein 901 42.17 0 940374..943631 - 1085 108563325 carB HPAG1_0900 - carbamoyl phosphate synthase large subunit 902 40.12 0 943729..944421 - 230 108563326 - HPAG1_0901 - hypothetical protein 903 40.26 0 944565..945560 + 331 108563327 - HPAG1_0902 - glyceraldehyde-3-phosphate dehydrogenase 904 38.57 0 945641..952894 + 2417 108563328 - HPAG1_0903 - vacuolating cytotoxin (VacA)-like protein 905 37.40 0 952945..954051 + 368 108563329 - HPAG1_0904 - outer membrane protein HopK 906 37.68 0 954119..954325 - 68 108563330 - HPAG1_0905 - 4-oxalocrotonate tautomerase 907 37.80 0 954472..955053 + 193 108563331 recR HPAG1_0906 - recombination protein RecR 908 35.34 -1 955050..956195 + 381 108563332 truD HPAG1_0907 - tRNA pseudouridine synthase D 909 39.65 0 956134..957114 + 326 108563333 - HPAG1_0908 - heat shock protein HtpX 910 37.94 0 957115..957657 + 180 108563334 folE HPAG1_0909 - GTP cyclohydrolase I 911 37.17 0 957673..958584 + 303 108563335 - HPAG1_0910 - geranyltranstransferase 912 41.29 0 958581..959384 + 267 108563336 surE HPAG1_0911 - stationary phase survival protein SurE 913 40.61 0 959381..960040 + 219 108563337 - HPAG1_0912 - hypothetical protein 914 40.26 0 960041..960646 + 201 108563338 - HPAG1_0913 - hypothetical protein 915 36.51 0 960643..961398 + 251 108563339 - HPAG1_0914 - hypothetical protein 916 41.77 0 961409..961894 + 161 108563340 - HPAG1_0915 - hypothetical protein 917 35.74 0 961898..962230 + 110 108563341 - HPAG1_0916 - putative outer membrane protein 918 39.15 0 962417..963586 - 389 108563342 - HPAG1_0917 - proline and betaine transporter 919 31.22 -2 964057..964860 - 267 108563343 - HPAG1_0918 - hypothetical protein 920 34.03 -1 964836..964979 - 47 108563344 - HPAG1_0919 - hypothetical protein 921 37.68 0 965033..965377 - 114 108563345 - HPAG1_0920 - hypothetical protein 922 36.67 0 965355..965744 - 129 108563346 - HPAG1_0921 - hypothetical protein 923 41.04 0 965813..966526 - 237 108563347 - HPAG1_0922 - amino acid ABC transporter, permease protein 924 40.99 0 966510..967280 - 256 108563348 - HPAG1_0923 - amino acid ABC transporter, periplasmic binding protein 925 41.27 0 967351..968484 - 377 108563349 - HPAG1_0924 - alanine racemase, biosynthetic 926 43.02 +1 968491..969843 - 450 108563350 - HPAG1_0925 - D-alanine glycine permease 927 40.47 0 969884..971116 - 410 108563351 - HPAG1_0926 - D-amino acid dehydrogenase 928 41.27 0 971138..971515 - 125 108563352 - HPAG1_0927 - hypothetical protein 39.24 MEAN 3.61 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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