version 1.0
Helicobacter pylori HPAG1, complete genome - 1..1596366 1536 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 519 31.35 -2 540507..541313 - 268 108562943 - HPAG1_0518 - cag pathogenicity island protein F 520 38.27 0 541315..542631 - 438 108562944 - HPAG1_0519 - cag pathogenicity island protein E 521 34.14 -1 542661..544265 - 534 108562945 - HPAG1_0520 - cag pathogenicity island protein E 522 32.26 -1 544274..544924 - 216 108562946 - HPAG1_0521 - cag pathogenicity island protein D 523 43.10 +1 544899..545246 - 115 108562947 - HPAG1_0522 - cag pathogenicity island protein C 524 33.77 -1 545391..545618 - 75 108562948 - HPAG1_0523 - cag pathogenicity island protein B 525 37.41 0 546049..549651 + 1200 108562949 - HPAG1_0524 - cytotoxin-associated protein A 526 35.33 -1 549714..549863 - 49 108562950 - HPAG1_0525 - transposase B-like protein 527 35.26 -1 549878..550033 - 51 108562951 - HPAG1_0526 - transposase B-like protein 528 40.89 0 550135..550902 - 255 108562952 - HPAG1_0527 - glutamate racemase 529 42.67 0 550939..552255 - 438 108562953 rho HPAG1_0528 - transcription termination factor Rho 530 39.71 0 552519..552722 + 67 108562954 rpmE HPAG1_0529 - 50S ribosomal protein L31 531 41.44 0 552747..553610 + 287 108562955 - HPAG1_0530 - hypothetical protein 532 39.91 0 553623..554306 + 227 108562956 - HPAG1_0531 - hypothetical protein 533 33.85 -1 554319..555284 + 321 108562957 - HPAG1_0532 - hypothetical protein 534 36.74 0 555281..556102 + 273 108562958 - HPAG1_0533 - hypothetical protein 535 38.13 0 556166..556603 - 145 108562959 - HPAG1_0534 - hypothetical protein 536 40.58 0 557048..557986 - 312 108562960 - HPAG1_0535 - acetyl-CoA carboxylase carboxyltransferase subunit alpha 537 44.63 +1 558008..559246 - 412 108562961 - HPAG1_0536 - 3-oxoacyl-(acyl carrier protein) synthase II 538 37.96 0 559262..559369 - 35 108562962 - HPAG1_0537 - hypothetical protein 539 43.04 +1 559558..559794 - 78 108562963 - HPAG1_0538 - acyl carrier protein 540 23.46 -2 559847..559927 - 26 108562964 - HPAG1_0539 - hypothetical protein 541 43.28 +1 560025..560768 - 247 108562965 fabG HPAG1_0540 - 3-ketoacyl-(acyl-carrier-protein) reductase 542 38.03 0 560810..561022 - 70 108562966 rpsU HPAG1_0541 - 30S ribosomal protein S21 543 39.57 0 561122..562372 - 416 108562967 - HPAG1_0542 - hypothetical protein 544 34.16 -1 562544..562786 + 80 108562968 - HPAG1_0543 - hypothetical protein 545 41.98 0 562810..563457 - 215 108562969 - HPAG1_0544 - hypothetical protein 546 38.93 0 563564..564385 - 273 108562970 dapF HPAG1_0545 - diaminopimelate epimerase 547 36.86 0 564500..565549 + 349 108562971 - HPAG1_0546 - membrane protein 548 38.67 0 565907..566674 - 255 108562972 - HPAG1_0547 - hypothetical protein 549 40.60 0 566818..567918 - 366 108562973 - HPAG1_0548 - translation-associated GTPase 550 40.98 0 567920..569410 - 496 108562974 - HPAG1_0549 - leucyl aminopeptidase 551 40.93 0 569458..570036 - 192 108562975 - HPAG1_0550 - hypothetical protein 552 43.70 +1 570051..570590 - 179 108562976 - HPAG1_0551 - adenine phosphoribosyltransferase 553 35.74 0 570648..570980 - 110 108562977 - HPAG1_0552 - hypothetical protein 554 40.48 0 571025..571486 - 153 108562978 - HPAG1_0553 - ribose-5-phosphate isomerase B 555 41.49 0 571507..572205 - 232 108562979 - HPAG1_0554 - hypothetical protein 556 39.98 0 572214..573086 - 290 108562980 - HPAG1_0555 - signal peptidase I 557 42.43 0 573086..573964 - 292 108562981 - HPAG1_0556 - methylene-tetrahydrofolate dehydrogenase 558 36.53 0 574038..576068 - 676 108562982 - HPAG1_0557 - hypothetical protein 559 36.02 0 576074..576631 - 185 108562983 - HPAG1_0558 - hypothetical protein 560 39.32 0 576635..577753 - 372 108562984 - HPAG1_0559 - hypothetical protein 561 40.00 0 577729..578748 - 339 108562985 - HPAG1_0560 - dihydroorotase 562 39.54 0 578752..579717 - 321 108562986 - HPAG1_0561 - putative siderophore-mediated iron transport protein 563 36.73 0 579701..580582 - 293 108562987 - HPAG1_0562 - hypothetical protein 564 38.17 0 580579..580950 - 123 108562988 - HPAG1_0563 - flagellar motor switch protein 565 41.31 0 581032..581595 - 187 108562989 - HPAG1_0564 - endonuclease III 566 40.08 0 581678..581914 - 78 108562990 - HPAG1_0565 - hypothetical protein 567 35.17 -1 581916..584849 - 977 108562992 - HPAG1_0567 - hypothetical protein 568 37.88 0 584767..585756 + 329 108562991 - HPAG1_0566 - aminodeoxychorismate lyase 569 45.32 +1 585941..586282 + 113 108562993 oorD HPAG1_0568 - 2-oxoglutarate-acceptor oxidoreductase subunit OorD 570 44.50 +1 586282..587409 + 375 108562994 oorA HPAG1_0569 - 2-oxoglutarate-acceptor oxidoreductase subunit OorA 571 44.40 +1 587411..588232 + 273 108562995 oorB HPAG1_0570 - 2-oxoglutarate-acceptor oxidoreductase subunit OorB 572 41.98 0 588232..588786 + 184 108562996 oorC HPAG1_0571 - 2-oxoglutarate-acceptor oxidoreductase subunit OorC 573 29.97 -2 588896..589579 + 227 108562997 - HPAG1_0572 - hypothetical protein 574 31.49 -2 589645..590673 + 342 108562998 - HPAG1_0573 - hypothetical protein 575 36.36 0 590818..590982 + 54 108562999 - HPAG1_0574 - hypothetical protein 576 39.92 0 590991..592463 + 490 108563000 - HPAG1_0575 - hypothetical protein 577 40.41 0 592938..593516 + 192 108563001 - HPAG1_0576 - tumor necrosis factor alpha-inducing protein 578 41.11 0 593519..595498 - 659 108563002 - HPAG1_0577 - penicillin-binding protein 1A 579 39.04 0 595498..596619 - 373 108563003 - HPAG1_0578 - 8-amino-7-oxononanoate synthase 580 38.94 0 596642..597943 - 433 108563004 - HPAG1_0579 - hemolysin secretion protein 581 31.58 -2 598015..598929 - 304 108563005 - HPAG1_0580 - multidrug resistance protein 582 31.88 -2 598895..599791 - 298 108563006 - HPAG1_0581 - multidrug resistance protein 583 44.55 +1 599960..601492 + 510 108563007 - HPAG1_0582 - flagellin A 584 35.16 -1 601610..602266 + 218 108563008 - HPAG1_0583 - 3-methyladenine DNA glycosylase 585 38.67 0 602263..602880 + 205 108563009 - HPAG1_0584 - hypothetical protein 586 40.86 0 602946..603968 + 340 108563010 hemE HPAG1_0585 - uroporphyrinogen decarboxylase 587 39.26 0 603978..605411 + 477 108563011 - HPAG1_0586 - hypothetical protein 588 39.86 0 605422..606126 + 234 108563012 - HPAG1_0587 - membrane fusion protein of the hefABC efflux system HefB 589 42.47 0 606139..609225 + 1028 108563013 - HPAG1_0588 - cytoplasmic pump protein of the hefABC efflux system HefC 590 38.95 0 609222..609791 + 189 108563014 - HPAG1_0589 - hypothetical protein 591 39.39 0 609910..619467 + 3185 108563015 - HPAG1_0590 - putative vacuolating cytotoxin (VacA)-like protein 592 30.59 -2 619529..620038 - 169 108563016 - HPAG1_0591 - hypothetical protein 593 30.83 -2 620046..620285 - 79 108563017 - HPAG1_0592 - ABC transporter, permease 594 33.96 -1 620285..620761 - 158 108563018 - HPAG1_0593 - ABC transporter, ATP-binding protein 595 32.07 -1 620745..620981 - 78 108563019 - HPAG1_0594 - ABC transporter, ATP-binding protein 596 38.44 0 621287..621619 - 110 108563020 - HPAG1_0595 - hypothetical protein 597 39.57 0 621744..623714 - 656 108563021 ligA HPAG1_0596 - NAD-dependent DNA ligase LigA 598 38.85 0 623792..624733 + 313 108563022 - HPAG1_0597 - chemotaxis protein 599 40.54 0 624768..626501 + 577 108563023 aspS HPAG1_0598 - aspartyl-tRNA synthetase 600 39.24 0 626518..627093 + 191 108563024 adk HPAG1_0599 - adenylate kinase 601 34.63 -1 627119..628117 + 332 108563025 - HPAG1_0600 - putative lipopolysaccharide biosynthesis protein 602 36.77 0 628137..628718 + 193 108563026 - HPAG1_0601 - putative lipopolysaccharide biosynthesis protein 603 37.55 0 628657..629463 + 268 108563027 - HPAG1_0602 - putative lipopolysaccharide biosynthesis protein 604 40.23 0 629518..630039 + 173 108563028 - HPAG1_0603 - inorganic pyrophosphatase 605 37.97 0 630187..632493 - 768 108563029 - HPAG1_0604 - recombination and DNA strand exchange inhibitor protein 606 36.89 0 632451..632816 - 121 108563030 - HPAG1_0605 - hypothetical protein 607 38.59 0 632816..634165 - 449 108563031 murC HPAG1_0606 - UDP-N-acetylmuramate--L-alanine ligase 608 39.36 0 634158..635285 - 375 108563032 - HPAG1_0607 - hypothetical protein 609 42.69 0 635405..636484 + 359 108563033 ispG HPAG1_0608 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 610 41.21 0 636487..637692 + 401 108563034 - HPAG1_0609 - tetrahydrodipicolinate N-succinyltransferase 611 43.72 +1 637704..638762 + 352 108563035 - HPAG1_0610 - hypothetical protein 612 36.09 0 638995..639501 + 168 108563036 - HPAG1_0611 - hypothetical protein 613 41.09 0 639522..641042 + 506 108563037 - HPAG1_0612 - hypothetical protein 614 43.59 +1 641088..641672 - 194 108563038 - HPAG1_0613 - modulator of drug activity 615 46.58 +2 641803..642957 + 384 108563039 - HPAG1_0614 - quinone-reactive Ni/Fe hydrogenase HydA 616 42.77 0 642967..644703 + 578 108563040 - HPAG1_0615 - quinone-reactive Ni/Fe hydrogenase HydB 617 39.70 0 644717..645391 + 224 108563041 - HPAG1_0616 - quinone-reactive Ni/Fe hydrogenase HydC 618 43.76 +1 645388..645924 + 178 108563042 - HPAG1_0617 - quinone-reactive Ni/Fe hydrogenase HydD 39.24 MEAN 3.61 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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