version 1.0
Helicobacter pylori HPAG1, complete genome - 1..1596366 1536 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 434 43.08 +1 441485..442387 - 300 108562858 - HPAG1_0433 - dihydrodipicolinate synthase 435 40.52 0 442402..443736 - 444 108562859 - HPAG1_0434 - putative zinc protease 436 39.58 0 443733..444788 - 351 108562860 - HPAG1_0435 - dihydroorotate dehydrogenase 2 437 39.05 0 444826..446853 - 675 108562861 - HPAG1_0436 - polyphosphate kinase 438 31.98 -2 447285..448544 - 419 108562862 - HPAG1_0437 - type I restriction enzyme S protein 439 37.32 0 448537..450168 - 543 108562863 - HPAG1_0438 - type I restriction enzyme M protein 440 35.59 -1 450161..452467 - 768 108562864 - HPAG1_0439 - type I restriction enzyme R protein 441 38.52 0 452561..453292 - 243 108562865 - HPAG1_0440 - type I restriction enzyme R protein 442 36.39 0 453340..455235 - 631 108562866 - HPAG1_0441 - hypothetical protein 443 36.46 0 455261..456028 - 255 108562867 - HPAG1_0442 - hypothetical protein 444 36.47 0 456038..456388 - 116 108562868 - HPAG1_0443 - hypothetical protein 445 37.50 0 456354..457841 - 495 108562869 - HPAG1_0444 - hypothetical protein 446 38.65 0 457853..458341 - 162 108562870 - HPAG1_0445 - hypothetical protein 447 38.11 0 458326..460062 - 578 108562871 - HPAG1_0446 - oligoendopeptidase F 448 36.93 0 460159..461409 - 416 108562872 - HPAG1_0447 - glutathione-regulated potassium-efflux system protein 449 31.77 -2 461563..461754 - 63 108562873 - HPAG1_0448 - hypothetical protein 450 42.42 0 461729..462289 - 186 108562874 - HPAG1_0449 - outer membrane protein HorE 451 34.14 -1 462512..463252 + 246 108562875 - HPAG1_0450 - molybdenum ABC transporter ModA 452 36.59 0 463274..463948 + 224 108562876 - HPAG1_0451 - molybdenum ABC transporter ModB 453 37.09 0 463945..464742 + 265 108562877 - HPAG1_0452 - molybdenum ABC transporter ModD 454 38.94 0 464858..466249 - 463 108562878 gltX HPAG1_0453 - glutamyl-tRNA synthetase 455 37.40 0 466367..467473 + 368 108562879 - HPAG1_0454 - outer membrane protein HopJ 456 33.46 -1 467482..469119 + 545 108562880 - HPAG1_0455 - type II adenine specific methyltransferase 457 32.74 -1 469085..469927 + 280 108562881 - HPAG1_0456 - hypothetical protein 458 42.83 0 469973..471772 + 599 108562882 - HPAG1_0457 - GTP-binding protein 459 35.48 -1 471788..472717 + 309 108562883 - HPAG1_0458 - type II adenine specific DNA methyltransferase 460 35.56 -1 472719..473303 + 194 108562884 - HPAG1_0459 - hypothetical protein 461 36.44 0 473435..473917 + 160 108562885 - HPAG1_0460 - type II DNA modification enzyme 462 39.89 0 473986..474930 - 314 108562886 - HPAG1_0461 - catalase like protein 463 44.68 +1 475216..476802 + 528 108562887 - HPAG1_0462 - outer membrane protein HofC 464 39.99 0 476860..478272 + 470 108562888 - HPAG1_0463 - outer membrane protein HofD 465 37.14 0 478414..481407 + 997 108562889 - HPAG1_0464 - hypothetical protein 466 36.89 0 481409..482335 + 308 108562890 - HPAG1_0465 - hypothetical protein 467 40.46 0 482709..483845 - 378 108562891 - HPAG1_0466 - putative potassium channel protein 468 44.97 +1 483995..484183 - 62 108562892 rpmB HPAG1_0467 - 50S ribosomal protein L28 469 35.36 -1 484283..485119 - 278 108562893 - HPAG1_0468 - neuraminyllactose-binding hemagglutinin 470 41.34 0 485246..486307 + 353 108562894 mraY HPAG1_0469 - phospho-N-acetylmuramoyl-pentapeptide-transferase 471 36.88 0 486309..487577 + 422 108562895 murD HPAG1_0470 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 472 34.48 -1 487574..487834 - 86 108562896 - HPAG1_0471 - hypothetical protein 473 39.55 0 487824..488225 - 133 108562897 - HPAG1_0472 - hypothetical protein 474 37.55 0 488456..489784 + 442 108562898 - HPAG1_0473 - sodium- and chloride-dependent transporter 475 38.00 0 489795..491123 + 442 108562899 - HPAG1_0474 - sodium- and chloride-dependent transporter 476 40.17 0 491138..492205 + 355 108562900 - HPAG1_0475 - phospholipase A1 477 35.91 0 492262..493386 + 374 108562901 - HPAG1_0476 - DNA polymerase III subunit beta 478 40.57 0 493399..495720 + 773 108562902 gyrB HPAG1_0477 - DNA gyrase subunit B 479 34.34 -1 495766..496758 + 330 108562903 - HPAG1_0478 - hypothetical protein 480 30.16 -2 496745..497500 + 251 108562904 - HPAG1_0479 - hypothetical protein 481 38.78 0 497716..498927 + 403 108562905 - HPAG1_0480 - putative outer membrane protein 482 37.00 0 498927..499553 + 208 108562906 - HPAG1_0481 - hypothetical protein 483 37.58 0 499594..500913 + 439 108562907 - HPAG1_0482 - hypothetical protein 484 42.39 0 500915..502294 + 459 108562908 - HPAG1_0483 - glycolate oxidase subunit 485 41.70 0 502317..503081 + 254 108562909 - HPAG1_0484 - dihydrodipicolinate reductase 486 38.46 0 503415..503531 + 38 108562910 - HPAG1_0485 - urease-enhancing factor 487 42.39 0 503801..505246 - 481 108562911 - HPAG1_0486 - glutamine synthetase 488 34.10 -1 505385..507481 + 698 108562912 - HPAG1_0487 - hypothetical protein 489 40.22 0 507547..507996 + 149 108562913 rplI HPAG1_0488 - 50S ribosomal protein L9 490 44.01 +1 508000..508542 + 180 108562914 - HPAG1_0489 - ATP-dependent protease peptidase subunit 491 38.74 0 508542..509873 + 443 108562915 hslU HPAG1_0490 - ATP-dependent protease ATP-binding subunit 492 37.42 0 509873..510778 + 301 108562916 era HPAG1_0491 - GTP-binding protein Era 493 38.27 0 510775..511767 + 330 108562917 - HPAG1_0492 - hypothetical protein 494 35.79 0 511846..512700 - 284 108562918 - HPAG1_0493 - hypothetical protein 495 32.92 -1 512719..512958 + 79 108562919 - HPAG1_0494 - IS606 transposase 496 36.78 0 513044..513391 + 115 108562920 - HPAG1_0495 - cag pathogenicity island protein 1 497 33.73 -1 513407..514165 + 252 108562921 - HPAG1_0496 - HP0521B-like protein 498 39.00 0 514158..515603 + 481 108562922 - HPAG1_0497 - cag pathogenicity island protein 3 499 37.65 0 515613..516122 + 169 108562923 - HPAG1_0498 - cag pathogenicity island protein 4 500 37.61 0 516241..518487 - 748 108562924 - HPAG1_0499 - cag pathogenicity island protein 5 501 36.86 0 518496..519488 - 330 108562925 - HPAG1_0500 - cag pathogenicity island encoded protein/ATPase protein 502 34.00 -1 519493..520092 - 199 108562926 - HPAG1_0501 - cag pathogenicity island protein Z 503 38.19 0 520227..524114 - 1295 108562927 - HPAG1_0502 - cag pathogenicity island protein Y 504 35.24 -1 524173..526161 - 662 108562928 - HPAG1_0503 - cag pathogenicity island protein Y 505 34.29 -1 526176..527747 - 523 108562929 - HPAG1_0504 - cag pathogenicity island protein X 506 36.13 0 527797..529404 - 535 108562930 - HPAG1_0505 - cag pathogenicity island protein W 507 34.39 -1 529409..530167 - 252 108562931 - HPAG1_0506 - cag pathogenicity island protein V 508 34.56 -1 530565..531215 + 216 108562932 - HPAG1_0507 - cag pathogenicity island protein U 509 36.77 0 531228..532070 + 280 108562933 - HPAG1_0508 - cag pathogenicity island protein T 510 30.00 -2 532188..532277 - 29 108562934 - HPAG1_0509 - hypothetical protein 511 32.50 -1 532270..532869 - 199 108562935 - HPAG1_0510 - cag pathogenicity island protein S 512 34.65 -1 533301..533681 - 126 108562936 - HPAG1_0511 - cag pathogenicity island protein Q 513 34.31 -1 534882..536012 + 376 108562937 - HPAG1_0512 - cag pathogenicity island protein M 514 34.31 -1 536027..536947 + 306 108562938 - HPAG1_0513 - cag pathogenicity island protein N 515 35.01 -1 537029..537742 - 237 108562939 - HPAG1_0514 - cag pathogenicity island protein L 516 38.66 0 537739..538884 - 381 108562940 - HPAG1_0515 - cag pathogenicity island protein I 517 40.52 0 538895..540007 - 370 108562941 - HPAG1_0516 - cag pathogenicity island protein H 518 36.13 0 540024..540452 - 142 108562942 - HPAG1_0517 - cag pathogenicity island protein G 519 31.35 -2 540507..541313 - 268 108562943 - HPAG1_0518 - cag pathogenicity island protein F 520 38.27 0 541315..542631 - 438 108562944 - HPAG1_0519 - cag pathogenicity island protein E 521 34.14 -1 542661..544265 - 534 108562945 - HPAG1_0520 - cag pathogenicity island protein E 522 32.26 -1 544274..544924 - 216 108562946 - HPAG1_0521 - cag pathogenicity island protein D 523 43.10 +1 544899..545246 - 115 108562947 - HPAG1_0522 - cag pathogenicity island protein C 524 33.77 -1 545391..545618 - 75 108562948 - HPAG1_0523 - cag pathogenicity island protein B 525 37.41 0 546049..549651 + 1200 108562949 - HPAG1_0524 - cytotoxin-associated protein A 526 35.33 -1 549714..549863 - 49 108562950 - HPAG1_0525 - transposase B-like protein 527 35.26 -1 549878..550033 - 51 108562951 - HPAG1_0526 - transposase B-like protein 528 40.89 0 550135..550902 - 255 108562952 - HPAG1_0527 - glutamate racemase 529 42.67 0 550939..552255 - 438 108562953 rho HPAG1_0528 - transcription termination factor Rho 530 39.71 0 552519..552722 + 67 108562954 rpmE HPAG1_0529 - 50S ribosomal protein L31 531 41.44 0 552747..553610 + 287 108562955 - HPAG1_0530 - hypothetical protein 532 39.91 0 553623..554306 + 227 108562956 - HPAG1_0531 - hypothetical protein 533 33.85 -1 554319..555284 + 321 108562957 - HPAG1_0532 - hypothetical protein 39.24 MEAN 3.61 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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