version 1.0
Helicobacter pylori HPAG1, complete genome - 1..1596366 1536 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 405 40.48 0 413988..414659 + 223 108562829 - HPAG1_0404 - putative transcriptional regulator 406 37.06 0 415172..416218 - 348 108562830 - HPAG1_0405 - hypothetical protein 407 42.05 0 416246..418447 - 733 108562831 flhA HPAG1_0406 - flagellar biosynthesis protein FlhA 408 38.83 0 418585..418857 + 90 108562832 rpsO HPAG1_0407 - 30S ribosomal protein S15 409 37.98 0 418888..420177 + 429 108562833 - HPAG1_0408 - hypothetical protein 410 40.48 0 420308..420811 + 167 108562834 - HPAG1_0409 - 3-dehydroquinate dehydratase 411 41.53 0 420825..421898 + 357 108562835 - HPAG1_0410 - proline peptidase 412 34.15 -1 421895..422386 + 163 108562836 - HPAG1_0411 - 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase 413 40.00 0 422380..423759 + 459 108562837 flhF HPAG1_0412 - flagellar biosynthesis regulator FlhF 414 38.76 0 423756..424640 + 294 108562838 - HPAG1_0413 - ATP-binding protein 415 36.59 0 424653..424928 - 91 108562839 - HPAG1_0414 - hypothetical protein 416 39.32 0 424937..425704 + 255 108562840 fliA HPAG1_0415 - flagellar biosynthesis sigma factor 417 40.75 0 425697..426761 + 354 108562841 fliM HPAG1_0416 - flagellar motor switch protein FliM 418 39.12 0 426765..427628 + 287 108562842 - HPAG1_0417 - flagellar motor switch protein FliY 419 38.55 0 427657..428193 + 178 108562843 - HPAG1_0418 - hypothetical protein 420 36.55 0 428190..428687 + 165 108562844 - HPAG1_0419 - hypothetical protein 421 37.31 0 428707..429159 - 150 108562845 - HPAG1_0420 - ferric uptake regulation protein 422 41.07 0 429319..430494 - 391 108562846 - HPAG1_0421 - recombination factor protein RarA 423 38.98 0 430491..430862 - 123 108562847 - HPAG1_0422 - putative heat shock protein 424 39.45 0 430872..431738 - 288 108562848 - HPAG1_0423 - co-chaperone-curved DNA binding protein A 425 40.21 0 431906..433156 + 416 108562849 - HPAG1_0424 - hypothetical protein 426 37.87 0 433164..434000 - 278 108562850 - HPAG1_0425 - hypothetical protein 427 38.24 0 434256..435152 - 298 108562851 - HPAG1_0426 - response regulator 428 40.54 0 435174..436394 - 406 108562852 ispDF HPAG1_0427 - bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein 429 40.32 0 436416..437846 - 476 108562853 - HPAG1_0428 - protease DO 430 41.51 0 437890..439332 - 480 108562854 - HPAG1_0429 - amino acid permease 431 37.81 0 439546..440148 - 200 108562855 - HPAG1_0430 - phosphatidylglycerophosphate synthase 432 36.78 0 440082..440690 - 202 108562856 - HPAG1_0431 - hypothetical protein 433 43.60 +1 440700..441488 - 262 108562857 - HPAG1_0432 - 7-alpha-hydroxysteroid dehydrogenase 434 43.08 +1 441485..442387 - 300 108562858 - HPAG1_0433 - dihydrodipicolinate synthase 435 40.52 0 442402..443736 - 444 108562859 - HPAG1_0434 - putative zinc protease 436 39.58 0 443733..444788 - 351 108562860 - HPAG1_0435 - dihydroorotate dehydrogenase 2 437 39.05 0 444826..446853 - 675 108562861 - HPAG1_0436 - polyphosphate kinase 438 31.98 -2 447285..448544 - 419 108562862 - HPAG1_0437 - type I restriction enzyme S protein 439 37.32 0 448537..450168 - 543 108562863 - HPAG1_0438 - type I restriction enzyme M protein 440 35.59 -1 450161..452467 - 768 108562864 - HPAG1_0439 - type I restriction enzyme R protein 441 38.52 0 452561..453292 - 243 108562865 - HPAG1_0440 - type I restriction enzyme R protein 442 36.39 0 453340..455235 - 631 108562866 - HPAG1_0441 - hypothetical protein 443 36.46 0 455261..456028 - 255 108562867 - HPAG1_0442 - hypothetical protein 444 36.47 0 456038..456388 - 116 108562868 - HPAG1_0443 - hypothetical protein 445 37.50 0 456354..457841 - 495 108562869 - HPAG1_0444 - hypothetical protein 446 38.65 0 457853..458341 - 162 108562870 - HPAG1_0445 - hypothetical protein 447 38.11 0 458326..460062 - 578 108562871 - HPAG1_0446 - oligoendopeptidase F 448 36.93 0 460159..461409 - 416 108562872 - HPAG1_0447 - glutathione-regulated potassium-efflux system protein 449 31.77 -2 461563..461754 - 63 108562873 - HPAG1_0448 - hypothetical protein 450 42.42 0 461729..462289 - 186 108562874 - HPAG1_0449 - outer membrane protein HorE 451 34.14 -1 462512..463252 + 246 108562875 - HPAG1_0450 - molybdenum ABC transporter ModA 452 36.59 0 463274..463948 + 224 108562876 - HPAG1_0451 - molybdenum ABC transporter ModB 453 37.09 0 463945..464742 + 265 108562877 - HPAG1_0452 - molybdenum ABC transporter ModD 454 38.94 0 464858..466249 - 463 108562878 gltX HPAG1_0453 - glutamyl-tRNA synthetase 455 37.40 0 466367..467473 + 368 108562879 - HPAG1_0454 - outer membrane protein HopJ 456 33.46 -1 467482..469119 + 545 108562880 - HPAG1_0455 - type II adenine specific methyltransferase 457 32.74 -1 469085..469927 + 280 108562881 - HPAG1_0456 - hypothetical protein 458 42.83 0 469973..471772 + 599 108562882 - HPAG1_0457 - GTP-binding protein 459 35.48 -1 471788..472717 + 309 108562883 - HPAG1_0458 - type II adenine specific DNA methyltransferase 460 35.56 -1 472719..473303 + 194 108562884 - HPAG1_0459 - hypothetical protein 461 36.44 0 473435..473917 + 160 108562885 - HPAG1_0460 - type II DNA modification enzyme 462 39.89 0 473986..474930 - 314 108562886 - HPAG1_0461 - catalase like protein 463 44.68 +1 475216..476802 + 528 108562887 - HPAG1_0462 - outer membrane protein HofC 464 39.99 0 476860..478272 + 470 108562888 - HPAG1_0463 - outer membrane protein HofD 465 37.14 0 478414..481407 + 997 108562889 - HPAG1_0464 - hypothetical protein 466 36.89 0 481409..482335 + 308 108562890 - HPAG1_0465 - hypothetical protein 467 40.46 0 482709..483845 - 378 108562891 - HPAG1_0466 - putative potassium channel protein 468 44.97 +1 483995..484183 - 62 108562892 rpmB HPAG1_0467 - 50S ribosomal protein L28 469 35.36 -1 484283..485119 - 278 108562893 - HPAG1_0468 - neuraminyllactose-binding hemagglutinin 470 41.34 0 485246..486307 + 353 108562894 mraY HPAG1_0469 - phospho-N-acetylmuramoyl-pentapeptide-transferase 471 36.88 0 486309..487577 + 422 108562895 murD HPAG1_0470 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 472 34.48 -1 487574..487834 - 86 108562896 - HPAG1_0471 - hypothetical protein 473 39.55 0 487824..488225 - 133 108562897 - HPAG1_0472 - hypothetical protein 474 37.55 0 488456..489784 + 442 108562898 - HPAG1_0473 - sodium- and chloride-dependent transporter 475 38.00 0 489795..491123 + 442 108562899 - HPAG1_0474 - sodium- and chloride-dependent transporter 476 40.17 0 491138..492205 + 355 108562900 - HPAG1_0475 - phospholipase A1 477 35.91 0 492262..493386 + 374 108562901 - HPAG1_0476 - DNA polymerase III subunit beta 478 40.57 0 493399..495720 + 773 108562902 gyrB HPAG1_0477 - DNA gyrase subunit B 479 34.34 -1 495766..496758 + 330 108562903 - HPAG1_0478 - hypothetical protein 480 30.16 -2 496745..497500 + 251 108562904 - HPAG1_0479 - hypothetical protein 481 38.78 0 497716..498927 + 403 108562905 - HPAG1_0480 - putative outer membrane protein 482 37.00 0 498927..499553 + 208 108562906 - HPAG1_0481 - hypothetical protein 483 37.58 0 499594..500913 + 439 108562907 - HPAG1_0482 - hypothetical protein 484 42.39 0 500915..502294 + 459 108562908 - HPAG1_0483 - glycolate oxidase subunit 485 41.70 0 502317..503081 + 254 108562909 - HPAG1_0484 - dihydrodipicolinate reductase 486 38.46 0 503415..503531 + 38 108562910 - HPAG1_0485 - urease-enhancing factor 487 42.39 0 503801..505246 - 481 108562911 - HPAG1_0486 - glutamine synthetase 488 34.10 -1 505385..507481 + 698 108562912 - HPAG1_0487 - hypothetical protein 489 40.22 0 507547..507996 + 149 108562913 rplI HPAG1_0488 - 50S ribosomal protein L9 490 44.01 +1 508000..508542 + 180 108562914 - HPAG1_0489 - ATP-dependent protease peptidase subunit 491 38.74 0 508542..509873 + 443 108562915 hslU HPAG1_0490 - ATP-dependent protease ATP-binding subunit 492 37.42 0 509873..510778 + 301 108562916 era HPAG1_0491 - GTP-binding protein Era 493 38.27 0 510775..511767 + 330 108562917 - HPAG1_0492 - hypothetical protein 494 35.79 0 511846..512700 - 284 108562918 - HPAG1_0493 - hypothetical protein 495 32.92 -1 512719..512958 + 79 108562919 - HPAG1_0494 - IS606 transposase 496 36.78 0 513044..513391 + 115 108562920 - HPAG1_0495 - cag pathogenicity island protein 1 497 33.73 -1 513407..514165 + 252 108562921 - HPAG1_0496 - HP0521B-like protein 498 39.00 0 514158..515603 + 481 108562922 - HPAG1_0497 - cag pathogenicity island protein 3 499 37.65 0 515613..516122 + 169 108562923 - HPAG1_0498 - cag pathogenicity island protein 4 500 37.61 0 516241..518487 - 748 108562924 - HPAG1_0499 - cag pathogenicity island protein 5 501 36.86 0 518496..519488 - 330 108562925 - HPAG1_0500 - cag pathogenicity island encoded protein/ATPase protein 502 34.00 -1 519493..520092 - 199 108562926 - HPAG1_0501 - cag pathogenicity island protein Z 503 38.19 0 520227..524114 - 1295 108562927 - HPAG1_0502 - cag pathogenicity island protein Y 504 35.24 -1 524173..526161 - 662 108562928 - HPAG1_0503 - cag pathogenicity island protein Y 39.24 MEAN 3.61 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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