version 1.0
Helicobacter pylori HPAG1, complete genome - 1..1596366 1536 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 340 36.72 0 348318..348908 + 196 108562764 - HPAG1_0339 - cysteine-rich protein H 341 31.56 -2 349095..349433 + 112 108562765 - HPAG1_0340 - hypothetical protein 342 36.01 0 349417..349977 + 186 108562766 - HPAG1_0341 - hypothetical protein 343 41.50 0 350080..350961 - 293 108562767 - HPAG1_0342 - hypothetical protein 344 40.55 0 350961..352511 - 516 108562768 - HPAG1_0343 - single-stranded-DNA specific exonuclease 345 42.12 0 352521..354137 - 538 108562769 - HPAG1_0344 - CTP synthetase 346 38.01 0 354395..355057 + 220 108562770 - HPAG1_0345 - hypothetical protein 347 39.38 0 355101..356804 + 567 108562771 fliF HPAG1_0346 - flagellar MS-ring protein 348 40.89 0 356822..357853 + 343 108562772 fliG HPAG1_0347 - flagellar motor switch protein G 349 37.07 0 357840..358616 + 258 108562773 fliH HPAG1_0348 - flagellar assembly protein H 350 43.46 +1 358613..360469 + 618 108562774 - HPAG1_0349 - 1-deoxy-D-xylulose-5-phosphate synthase 351 42.18 0 360466..362274 + 602 108562775 - HPAG1_0350 - GTP-binding protein LepA 352 34.93 -1 362289..362978 + 229 108562776 - HPAG1_0351 - hypothetical protein 353 39.06 0 362989..363285 + 98 108562777 - HPAG1_0352 - hypothetical protein 354 29.33 -2 363326..363400 - 24 108562778 - HPAG1_0353 - hypothetical protein 355 37.09 0 363538..363750 + 70 108562779 - HPAG1_0354 - hypothetical protein 356 42.10 0 363968..364777 - 269 108562780 - HPAG1_0355 - flagellar basal-body rod protein 357 40.05 0 364832..366112 - 426 108562781 - HPAG1_0356 - alpha-ketoglutarate permease 358 40.68 0 366295..368907 - 870 108562782 - HPAG1_0357 - cell division protein 359 35.39 -1 368877..371210 - 777 108562783 - HPAG1_0358 - hypothetical protein 360 44.43 +1 371207..373135 - 642 108562784 - HPAG1_0359 - transketolase 361 37.60 0 373179..374021 - 280 108562785 - HPAG1_0360 - bifunctional riboflavin kinase/FMN adenylyltransferase 362 36.72 0 373987..374694 - 235 108562786 - HPAG1_0361 - hemolysin 363 38.18 0 374694..375209 - 171 108562787 - HPAG1_0362 - hypothetical protein 364 42.10 0 375276..376199 + 307 108562788 pyrB HPAG1_0363 - aspartate carbamoyltransferase catalytic subunit 365 42.22 0 376496..377935 + 479 108562789 - HPAG1_0364 - outer membrane protein HofB 366 38.89 0 378026..379681 + 551 108562790 - HPAG1_0365 - multidrug resistance protein 367 37.66 0 379675..380298 + 207 108562791 - HPAG1_0366 - hypothetical protein 368 38.42 0 380302..380871 + 189 108562792 - HPAG1_0367 - hypothetical protein 369 30.64 -2 381004..382116 + 370 108562793 - HPAG1_0368 - hypothetical protein 370 25.73 -2 382139..382822 + 227 108562794 - HPAG1_0369 - hypothetical protein 371 41.57 0 382880..383875 + 331 108562795 - HPAG1_0370 - high affinity nickel transport protein 372 36.21 0 383879..384400 - 173 108562796 - HPAG1_0371 - hypothetical protein 373 40.02 0 384536..385852 + 438 108562797 - HPAG1_0372 - hypothetical protein 374 36.48 0 386024..386404 - 126 108562798 - HPAG1_0373 - hypothetical protein 375 40.30 0 386503..386703 - 66 108562799 - HPAG1_0374 - copper ion binding protein 376 39.77 0 386704..388941 - 745 108562800 - HPAG1_0375 - copper-transporting ATPase 377 39.78 0 388938..389651 - 237 108562801 - HPAG1_0376 - phosphatidylserine synthase 378 29.02 -2 389641..389895 - 84 108562802 - HPAG1_0377 - hypothetical protein 379 43.65 +1 389898..391796 - 632 108562803 - HPAG1_0378 - cell division protein 380 37.37 0 391805..392794 - 329 108562804 prmA HPAG1_0379 - ribosomal protein L11 methyltransferase 381 41.07 0 392795..393169 - 124 108562805 - HPAG1_0380 - chemotaxis protein 382 36.82 0 393464..394066 + 200 108562806 - HPAG1_0381 - outer membrane protein HorD 383 35.29 -1 394198..394605 - 135 108562807 - HPAG1_0382 - hypothetical protein 384 40.69 0 394608..394838 - 76 108562808 - HPAG1_0383 - hypothetical protein 385 35.20 -1 394832..395368 - 178 108562809 gidB HPAG1_0384 - glucose-inhibited division protein B 386 38.44 0 395365..396402 - 345 108562810 queA HPAG1_0385 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase 387 40.11 0 396403..397125 - 240 108562811 - HPAG1_0386 - hypothetical protein 388 35.61 -1 397118..397600 - 160 108562812 - HPAG1_0387 - sec-independent translocase 389 41.84 0 397668..398678 - 336 108562813 ruvB HPAG1_0388 - Holliday junction DNA helicase B 390 41.82 0 398679..399491 - 270 108562814 panB HPAG1_0389 - 3-methyl-2-oxobutanoate hydroxymethyltransferase 391 38.73 0 399640..400362 + 240 108562815 - HPAG1_0390 - hypothetical protein 392 36.55 0 400340..401209 + 289 108562816 - HPAG1_0391 - hypothetical protein 393 36.36 0 401239..402162 + 307 108562817 - HPAG1_0392 - hypothetical protein 394 37.11 0 402172..403494 + 440 108562818 - HPAG1_0393 - hypothetical protein 395 35.17 -1 403431..404084 + 217 108562819 minC HPAG1_0394 - septum formation inhibitor 396 41.33 0 404081..404968 + 295 108562820 lpxC HPAG1_0395 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 397 37.34 0 404990..405463 + 157 108562821 - HPAG1_0396 - hypothetical protein 398 41.27 0 405517..406398 + 293 108562822 - HPAG1_0397 - homoserine kinase 399 35.93 0 406370..406639 + 89 108562823 - HPAG1_0398 - hypothetical protein 400 41.66 0 406636..409470 + 944 108562824 infB HPAG1_0399 - translation initiation factor IF-2 401 39.58 0 409470..409805 + 111 108562825 rbfA HPAG1_0400 - ribosome-binding factor A 402 37.87 0 409798..410238 + 146 108562826 - HPAG1_0401 - hypothetical protein 403 41.63 0 410346..412334 - 662 108562827 - HPAG1_0402 - acetyl-CoA synthetase 404 37.65 0 412537..413649 + 370 108562828 - HPAG1_0403 - hypothetical protein 405 40.48 0 413988..414659 + 223 108562829 - HPAG1_0404 - putative transcriptional regulator 406 37.06 0 415172..416218 - 348 108562830 - HPAG1_0405 - hypothetical protein 407 42.05 0 416246..418447 - 733 108562831 flhA HPAG1_0406 - flagellar biosynthesis protein FlhA 408 38.83 0 418585..418857 + 90 108562832 rpsO HPAG1_0407 - 30S ribosomal protein S15 409 37.98 0 418888..420177 + 429 108562833 - HPAG1_0408 - hypothetical protein 410 40.48 0 420308..420811 + 167 108562834 - HPAG1_0409 - 3-dehydroquinate dehydratase 411 41.53 0 420825..421898 + 357 108562835 - HPAG1_0410 - proline peptidase 412 34.15 -1 421895..422386 + 163 108562836 - HPAG1_0411 - 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase 413 40.00 0 422380..423759 + 459 108562837 flhF HPAG1_0412 - flagellar biosynthesis regulator FlhF 414 38.76 0 423756..424640 + 294 108562838 - HPAG1_0413 - ATP-binding protein 415 36.59 0 424653..424928 - 91 108562839 - HPAG1_0414 - hypothetical protein 416 39.32 0 424937..425704 + 255 108562840 fliA HPAG1_0415 - flagellar biosynthesis sigma factor 417 40.75 0 425697..426761 + 354 108562841 fliM HPAG1_0416 - flagellar motor switch protein FliM 418 39.12 0 426765..427628 + 287 108562842 - HPAG1_0417 - flagellar motor switch protein FliY 419 38.55 0 427657..428193 + 178 108562843 - HPAG1_0418 - hypothetical protein 420 36.55 0 428190..428687 + 165 108562844 - HPAG1_0419 - hypothetical protein 421 37.31 0 428707..429159 - 150 108562845 - HPAG1_0420 - ferric uptake regulation protein 422 41.07 0 429319..430494 - 391 108562846 - HPAG1_0421 - recombination factor protein RarA 423 38.98 0 430491..430862 - 123 108562847 - HPAG1_0422 - putative heat shock protein 424 39.45 0 430872..431738 - 288 108562848 - HPAG1_0423 - co-chaperone-curved DNA binding protein A 425 40.21 0 431906..433156 + 416 108562849 - HPAG1_0424 - hypothetical protein 426 37.87 0 433164..434000 - 278 108562850 - HPAG1_0425 - hypothetical protein 427 38.24 0 434256..435152 - 298 108562851 - HPAG1_0426 - response regulator 428 40.54 0 435174..436394 - 406 108562852 ispDF HPAG1_0427 - bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein 429 40.32 0 436416..437846 - 476 108562853 - HPAG1_0428 - protease DO 430 41.51 0 437890..439332 - 480 108562854 - HPAG1_0429 - amino acid permease 431 37.81 0 439546..440148 - 200 108562855 - HPAG1_0430 - phosphatidylglycerophosphate synthase 432 36.78 0 440082..440690 - 202 108562856 - HPAG1_0431 - hypothetical protein 433 43.60 +1 440700..441488 - 262 108562857 - HPAG1_0432 - 7-alpha-hydroxysteroid dehydrogenase 434 43.08 +1 441485..442387 - 300 108562858 - HPAG1_0433 - dihydrodipicolinate synthase 435 40.52 0 442402..443736 - 444 108562859 - HPAG1_0434 - putative zinc protease 436 39.58 0 443733..444788 - 351 108562860 - HPAG1_0435 - dihydroorotate dehydrogenase 2 437 39.05 0 444826..446853 - 675 108562861 - HPAG1_0436 - polyphosphate kinase 438 31.98 -2 447285..448544 - 419 108562862 - HPAG1_0437 - type I restriction enzyme S protein 439 37.32 0 448537..450168 - 543 108562863 - HPAG1_0438 - type I restriction enzyme M protein 39.24 MEAN 3.61 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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